Array 1 840-413 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDR01000015.1 Bacillus thuringiensis serovar japonensis strain Buibui 51650, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 839 32 100.0 34 ................................ ATTGGGGTGAAATGCGAGTGGATCAGAAGAAAGT 773 32 100.0 33 ................................ ATAGATAACAAGGGGCTTGTTGGTGGTAAATAT 708 32 100.0 33 ................................ AACATATCTAAAATAACCATCATATTTCTGTTT 643 32 100.0 34 ................................ GTCCAGCATGTGCCTTGGCAAACTCAGGAGGAAC 577 32 96.9 35 ...........C.................... TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 510 32 93.8 34 ...................T...A........ ATTAGACGAGATATATCCACAGAAGAAGAATTAC 444 32 87.5 0 .......T............C.AA........ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAACTAACAGTGTTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAATTAAAATTATTAACGAAGATGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAGGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTCGTGCATTCGCACCTGAATTTTCATAATTTATGAGCGAAGTTTAATATTTTTTATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAGTGTATTTTTGTATGGTTTTAAACAAAAATCGCT # Right flank : TGAAATTACTTGCTGCCTTATCTAGATTACTTTCTTCGCATCTCAGGTGTGTGGAGTAAGACTGATAAAATAATTGATAGTAATTTAGTGTCTCTATTGGAGTAAGAGGACCTGTTTCAATTCATAAAGCAACGAGTGTTAATTCAATTGACATTACTAGTATGCAAATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4310-5223 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDR01000060.1 Bacillus thuringiensis serovar japonensis strain Buibui 51696, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================== ================== 4310 32 100.0 34 ................................ CAAAGACCCTCTTGCAGTCCTCAAAACGCAGTAC 4376 32 100.0 34 ................................ CATAAGAATGAGCACGGACATCGCGGTTTTATGG 4442 32 100.0 33 ................................ CTACGCTACACGTCTAAAGGGATTGTAGGGGTA 4507 32 100.0 34 ................................ ATTATGGAAAGTAAGGTTAATGTAGCAGATCCAG 4573 32 100.0 34 ................................ TCACCATTGGATTTATTAACATCTAGTGTTTCGG 4639 32 96.9 34 ........................G....... TATTAATGTAATAGAAAAAGAGAAAGAGACTAAG 4705 32 96.9 34 ....T........................... CACATTAAGAATTTTGGAACAAAGATTGTAAAGC 4771 32 93.8 33 .........C..............T....... ACTCCTATTCATTTTTCAAAGATCGTGCTTCAA 4836 32 93.8 34 ...A.....C...................... CCCTGCTGATGCAACATCGCTACCTACATTTTGT 4902 32 87.5 33 .........C...A......A..........C CATTGGTTTATCAGGAGTCATTGGCTTGTCATG 4967 32 96.9 35 ...................T............ TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTGT 5034 31 87.5 34 ......T.-..........TA........... TACCTAGGGTTTATATTTATCTGGAAAGCTCATA 5099 32 96.9 62 .....................A.......... GGGGATATGCCAGGCGTTTGGCAAAGTGTTATTGGTTTATCAGGAGTCATTGGCTTGTTATG 5193 31 87.5 0 .........C.-.A......C........... | ========== ====== ====== ====== ================================ ============================================================== ================== 14 32 95.5 36 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGAATCAATATATTAAGGGTATTATGAAACTATACATTTTGGTTATTCAATTAGGTAATAGCTATGAAAATAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGCCCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTTGAATTCTCATGCTTTATAATGGTGATTTATGATTTTTATACAAATTACTTTATTAAATAAAAACATTTGTATATTTTTGGATAAAACTAACGTATTTTTGGTTGATTTCGAACACAAATCGGT # Right flank : TTAGCAATGCTCTGGCTTTAAAACGCTCTGCAGATGTAGATACTCAACTGGAAGTATCTATATCTGTAGTATCTAACACACATGTTATAAACATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGGCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATCGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCT # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //