Array 1 317060-318856 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTJK01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H16 isolate H16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317060 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 317121 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 317182 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317243 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 317304 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317365 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317426 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 317487 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 317548 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317609 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317670 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 317731 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317792 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 317853 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317914 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 317975 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 318036 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 318097 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 318158 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 318219 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 318280 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318341 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318402 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 318463 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318524 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318585 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318646 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318707 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318768 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318829 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334989-335445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTJK01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H16 isolate H16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334989 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335050 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335111 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335172 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335233 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335294 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335355 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335416 29 96.6 0 A............................ | A [335442] ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //