Array 1 13101-11558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000013.1 Megamonas rupellensis strain An805 An805_NODE_13_length_67568_cov_74.5537, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13100 30 100.0 36 .............................. CCTTCATCGCCCAATTTCAAATAATACTGTAACTCT 13034 30 100.0 36 .............................. TACAGCCTTTGGAGCTGAAAAGCCTGGCGAAGTGAA 12968 30 100.0 36 .............................. CAGTGGGAAATTCTTCTAATACTGTAAGAGCATTGA 12902 30 100.0 36 .............................. CTGATTATGTTGTTATTCGAGGGGGTATAAAATGCA 12836 30 100.0 36 .............................. CCCAGACGCTAGGTTACAGCGTCCGGAATATTTAGG 12770 30 100.0 36 .............................. CTATAAGGAGTTGTTTTTTTATGACTTGTTACCACC 12704 30 100.0 37 .............................. CCATACAAAGTATCTATTTCTTGCTGTTCAGTGTTTA 12637 30 100.0 34 .............................. TAAGAAATTTGAAAAAAGAATATGAAGGTTCTGT 12573 30 100.0 36 .............................. GTGTTTTAAACCTCCTGCAAAGAATACATCAAATAT 12507 30 100.0 35 .............................. GTTAGCACATTCAATGCTAGTAGCTTCTTTTATAC 12442 30 100.0 36 .............................. GTGGGAAGTGGAAGATTTAAGAAAGGCTGGTTTAAA 12376 30 100.0 37 .............................. TGCCTAATTTGTTACCTGGAGAATTTGCAAGTGATGG 12309 30 100.0 35 .............................. TCTATACCAAAGACAACATAAGGTTTGCGAAAAAC 12244 30 100.0 35 .............................. CATATTAGGCTATCTCTAGTTTCCAATTTAGAATT 12179 30 100.0 35 .............................. CATATTAGGCTATCTCTAGTTTCCAATTTAGAATT 12114 30 100.0 35 .............................. GAATAAGTTTTCATATGTTTTACCTCACCTTTTAT 12049 30 100.0 36 .............................. TCTCAATAAGGGCTAGCTTCGGTTAGTCCTTTTTGA 11983 30 100.0 34 .............................. CCGTATTCTATAACCTCATCAAAATCCCCGTCTA 11919 30 100.0 35 .............................. TTTCCATGATATCCATTTATATATAAACCTCCGTA 11854 30 100.0 37 .............................. CTTTATTTTTCTCCTACAAAATCTTCTAGTAAATTTC 11787 30 100.0 37 .............................. AGTTCGGCGCGGTCGCTAGGCGTTAACATTTCATCAT 11720 30 100.0 37 .............................. GTTAAATAGTCCACATTTAGAACTCTTATAATTTGGT 11653 30 100.0 36 .............................. CCGTTTTCTCTGGTGAATGCTTCCTGAAGTGTGAAG 11587 30 80.0 0 ....C.......T..T.......TA....A | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.2 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : GCTGTCAGACCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAATTCTGCCATATCCTCATCAATAGTTCTGATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAAATTTTCTTTTGCAAATAAACTTTTATCAATAAATCTAGTCAACATGATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACCTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTAATATATTCATCTTTATTTAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGCTGGTAAAAAATCCCTAAACCTTGATAAAATCACTATTTTCATATATAATATATTTCATAAACCTTAATCTTTAAGGG # Right flank : AGACTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATGCGTATTTACTCCTATTGATGTATACTGAGAAAATTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGATCTTAAAACGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAAATTCCAGATAGCAACTAAATTCATTATTATATCATGCGGTTGACAAATCATTTTGTCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAATTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 3-164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000112.1 Megamonas rupellensis strain An805 An805_NODE_114_length_209_cov_0.636364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 35 .............................. TCACCCCACCATTAACAATCCTGCACCAATAGCCA 68 30 100.0 37 .............................. ATATTAACGGAAGAATGGTTCTAGGCGAAAATTGTCT 135 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 ATTCAAATACAACACTTGTTAAAGTTAAAT # Left flank : CTA # Right flank : TCACCCCACCATTAACAATCCTGCACCAATAGCCAATTCAAATAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAATACAACACTTGTTAAAGTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 41390-42734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000021.1 Megamonas rupellensis strain An805 An805_NODE_21_length_42734_cov_108.474, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 41390 30 80.0 36 T..TTTG................T...... TTAACGGGATATATGGAAAAGACAATCAAATATTGA 41456 30 100.0 34 .............................. TGAACGAATAGAGGAATACAGGAGGGAAAATTGA 41520 30 100.0 36 .............................. TGTTCAGTAAGATTCCACACTTTATCTTTCTTTTTA 41586 30 100.0 37 .............................. AGGGGGTGCAAGCCCCCTACCTAAAAAGTAAAAAAAA 41653 30 100.0 37 .............................. ATGCTGCCAATAAGATGAATAGTATATTAAGTGCAGA 41720 30 100.0 36 .............................. AACTTCTCCACCAATCTAAACAATAAAGCAATCGTC 41786 30 100.0 35 .............................. CGGTGGGGTGTTCTTCAATTAGCTAAAAAAGTTAA 41851 30 100.0 35 .............................. CGAGATTGGGCAAGATATCATTATTGGGATCCAAG 41916 30 100.0 36 .............................. ACTTCTCTAAATTTTTCTCTTTCTTCTGTACCGACT 41982 30 100.0 36 .............................. TTTTATGACCAAAGAATTAAGAAAAGAAATATGGAA 42048 30 100.0 37 .............................. AGTGGTATTGTTTGCATATTCCGTACCTCCTAAGCAA 42115 30 100.0 36 .............................. ATTTAATCAAGGTGCATTTGGTACTATTTATAATGT 42181 30 100.0 37 .............................. CTTACAATCATTATGATAGTTATTTTTCTTACTTAGG 42248 30 100.0 36 .............................. GTAATTCCCTGTATTAAGTCTTGGCTGGACTCATCA 42314 30 100.0 37 .............................. GTGGATGGTGCAATTGTATCTGGTAAGTTTGGTTCGT 42381 30 100.0 34 .............................. TAAATTAAGAGTACAGTTACAGCTGTACTCTTTT 42445 30 100.0 35 .............................. GATAAATATTTTTCTATAGCTTCTTGGATAGTATA 42510 30 100.0 34 .............................. GTATCAGCTGTAAAAATTTCTCTTTTTATACCTA 42574 30 100.0 34 .............................. GTGTATTTAAACCAAAACAAATAGTCCCTTTTCT 42638 30 100.0 37 .............................. AGTGGTATTGTTTGCATATTCCGTACCTCCTAAGCAA 42705 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.0 36 ATTCAAATACAACACTTGTTAAAGTTAAAT # Left flank : TCAATAATTGAGAAGATAAAAAATTATAATTTGACAATATTATTGATTCCTATAGGTGTAATTATTGGGTCTGTTTTTGGCGGATTTATTTGCAGTTATATTTTTGATATGAATTTGGTATATAGTTTATCTATTGGTGCATCTATGGGCTGGTATAGTTTATCAGGGGTAATGCTTGAAACACTAGCAAATGCACAGATAGGCACAATAGCCTTTTTGAGTAGCTTGATGAGAGAATTTATCGCTTTTATGATGATTCCAGTTTTAGTAAAATATTTAAATACATTTGCAGCTATAGGAGCAGCAGGTGCAACAAGCGAAGATTCCACTTTGCCTATGCTTATAAAATATAGTAGTGAAGAATTTATTATTATATCTGTAATTAATGGTGTATTATGTTCAGTAGCCGTACCAATTTTAATAAACTTTTTCTTTTCCACATTATAAAATTAATAAAAAAAGCTGTAACATTGAGAAATTCTCTTTGTTACAGCTTTTAT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAATACAACACTTGTTAAAGTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 48-2452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000028.1 Megamonas rupellensis strain An805 An805_NODE_28_length_29364_cov_82.1777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48 30 100.0 36 .............................. GTACGAAAGAGATGCTAGAGGTGGTACACGTTATAC 114 30 100.0 37 .............................. CGTTTAGGCACGTTATGAAAATAGCGTGCTTTTTTAT 181 30 100.0 36 .............................. ATTACCATTATATATAGAAATATATGACGGATGTAA 247 30 100.0 36 .............................. GGAGTTCGGAAATGTGAACAGGTATGATAAATTAAT 313 30 100.0 36 .............................. TGTCTAAGAAGCCTTTTATTACGCTTTCAGCTCCTT 379 30 100.0 35 .............................. ATACAAAGTTATATAAGTAATAAAATATGGAGTAA 444 30 100.0 36 .............................. CATTTGCACCAAATTCACTATTAACATCTACCGCAA 510 30 100.0 36 .............................. TTTTACCACCTCAACGCTTCGATTACCTTTATTACA 576 30 100.0 36 .............................. TTTCATTCTCTTAAACATATCGCAACTATTAATCAT 642 30 100.0 36 .............................. TATGCCTACAAAATACGAGATAGAAGAACTTGATAA 708 30 100.0 37 .............................. TCGATTGTGTCAGATGTAGCATACATACCATATTTTC 775 30 100.0 36 .............................. TCTAAAAAGTTTGGCAATTTTCTTGTTTCTTGCTTA 841 30 100.0 36 .............................. AGAAACTAAGAAGGTTAAGAAAGAACAACAAAATAA 907 30 100.0 34 .............................. AGGAGGATAAGCACATGGCAGAAATATATTTTAA 971 30 100.0 37 .............................. TTCCGCTAAAGGAGGAAAAACAAAGCTTGAAAATAAT 1038 30 100.0 35 .............................. AATAATAAGTATAGAAAAAGTGTTGTTATATTCTA 1103 30 100.0 36 .............................. AGAAACATTGACTATAAATGCAATAGCAATACCGAA 1169 30 100.0 37 .............................. AATCACCCCACCATTAACAATCCTGCACCAATAACCA 1236 30 100.0 36 .............................. ACTTTACAGATTTAGCCTACAAAACAGTTTTCGGAA 1302 30 100.0 37 .............................. CCGCCTCTATCTGGGTGGAATTTTAAAGCTAATTCTT 1369 30 100.0 36 .............................. CGCTGTTAAAATCGAAAGTGTTAATATTAAAGACAA 1435 30 100.0 37 .............................. ATATTAACGGAAGAATGGTTCTAGGCGAAAATGGGCT 1502 30 100.0 35 .............................. TCACCCCACCATTAACAATCCTGCACCAATAACCA 1567 30 100.0 36 .............................. GATGCACCAAGGGGGAGTTCTACTCCAGGACCTTTT 1633 30 100.0 36 .............................. TATCCCCCCAATTCTCTATAAGGAGTTGTTTTTTTA 1699 30 100.0 34 .............................. TTAAACACAGCTAATGTTAATTATTTAGGCGCCA 1763 30 100.0 36 .............................. ACTATTAATTCACTTCGTCAAGCCTTTCAGCTTCAA 1829 30 100.0 36 .............................. AGATTAAAGTTAGTTGAATAAATGTTGTTCCGCAGA 1895 30 100.0 35 .............................. GCTAAATACTACAGGCTTGTTGGGTACATATTCTA 1960 30 100.0 36 .............................. AATAAAATTTGTGGTTCCGATTGCACAGCAAGAACA 2026 30 100.0 36 .............................. TTTTTTAGCATCCGCTAGACTTAAGCCATTTTCATC 2092 30 100.0 36 .............................. GTACTAGCATTAAATATTCCATCACCGCCATTATTT 2158 30 100.0 36 .............................. TAACATCTGGGTATTTTTCATGGTCAACTTCGCTCA 2224 30 100.0 36 .............................. CCCAGACTTTAGAGCAAACGAAACAGAGTTATACGT 2290 30 100.0 36 .............................. ATTCACAAAAACAGGTAAATTTATTGGATTTCACGA 2356 30 100.0 37 .............................. GCTATTTATAGAACACATTTAGACCAAAGAATAAGGA 2423 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 37 30 100.0 36 ATTCAAATACAACACTTGTTAAAGTTAAAT # Left flank : GTTAAAGTTAAATATATAGCCATACAATGTGAACATGGAGCAGTGTAA # Right flank : TGCCAGTAAAATCAATACTTTTATAAATAATTATAGTTTATAAAGATTGAAATATCAATATTTATGAAAATTTTACCAGCGATTGAGATTGATTTTTTGATTTTTAATAAATCCTTTATTTATAAGGATTTCAGGTTTTAAACTAAAAAATGGTTGGGAAAATAAAAAAGGCACTTGTTTACACAAATGCCTTTAAATAATTATTTTACATTAGCAAAAGCTTGTTTTAAGTCATCTAAAATATCATTGATATCTTCAAGACCTACAGAGAAACGAACCATACCGCTATTGATACCAGCTGCTTCAAGTTGTTCATCTGTCAATTGACGATGTGTTTCACTTGCTGGGTGAAGAACACAAGTACGAATATCGGCAACATGAACTTCATTAGAAGCTAATTTTAAGGAGTCCATGAATTTGACAGCGTTTTCTTTACCACCTTTGATTACGAAAGTGATAACACCACTGCAACCTTTTAAATATTTTTTAGCAAGAGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAATACAACACTTGTTAAAGTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 93205-96789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000002.1 Megamonas rupellensis strain An805 An805_NODE_2_length_164003_cov_96.0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 93205 30 100.0 36 .............................. ATGCTAACGTCTTTTGTGTAGCATCTATCTATTGCA 93271 30 100.0 35 .............................. TGAAGCATATTGTAAACTTGAAAGTTTGGCTCAAA 93336 30 100.0 35 .............................. AATAACGACATAATCATGATTGTAAACGTCGCCTG 93401 30 100.0 35 .............................. AGGTGTAATAAGCGTTTGAATACCACTGTAGATAT 93466 30 100.0 37 .............................. TTAAAATGCCACCACCAGGGGCAAGACGAGTATATAA 93533 30 100.0 38 .............................. ATAAAACGGTAATTACAAAAATGGCTTATTTTGACATA 93601 30 100.0 36 .............................. GGTTGTACGCCCTAAACGGAAGGGCGTTTATTTTTT 93667 30 100.0 36 .............................. ACTTCCCATTGGTGCCTATTTTGCATGCTTTCCTTT 93733 30 100.0 35 .............................. TGGTATATCACCTCTTAAGCCCCTGTTAATTGTGG 93798 30 100.0 36 .............................. TTGTTATTATCTCCTTTTTATTTAACTTACATATAT 93864 30 100.0 36 .............................. GTGTTCTCAACTCTTATAATAGAACCTTTGCATATA 93930 30 100.0 36 .............................. TAATAGATAGACTAGGTAGAAGCCAAAATGCAAACT 93996 30 100.0 36 .............................. AACGGATAAAAAAGGCAATATTAAAGTAACAGCGTA 94062 30 100.0 36 .............................. TAGTGATGTTTCTACTGTTGTAGAAGTTCAATCGCT 94128 30 100.0 36 .............................. AGGGGGTAAACATCAGACGTAAATTTCTCTAGCCAA 94194 30 100.0 34 .............................. GTATGACGTTGTTACTACAAACGTTGGTAGCATG 94258 30 100.0 37 .............................. TATAAGATACTCCTTTTTAATTATTATTTTACCAAAA 94325 30 100.0 36 .............................. ACTAAAGCTAACTATCAGAAACGTTCTAACGAGATT 94391 30 100.0 35 .............................. TTAATAACGTACTTTACTTAATATATCATAGCAAT 94456 30 100.0 35 .............................. TTAATAACGTACTTTACTTAATATATCATAGCAAT 94521 30 100.0 36 .............................. GCTCGATATACAGCATTAGAACTTTTAACGTGGTCT 94587 30 100.0 36 .............................. TTGGCAGCACAAAAGGAGAGCATGCAAAATAGACAC 94653 30 100.0 37 .............................. TAAACATCATCTCCATTTGTAGATTGATGAGCTATTA 94720 30 100.0 35 .............................. TAAATATTGACCAAGGAGCCTTTGCAGGTTATATA 94785 30 100.0 35 .............................. TCATATGCTATACCAATATAACTAACATAATCTAA 94850 30 100.0 36 .............................. GCCTTCTTATCATAAATAGCGTATAAATGCATATTA 94916 30 100.0 36 .............................. ATAGATATTAATTTTTATTCCTGGATTTATAAAGCA 94982 30 100.0 37 .............................. GATTATTACTAATAGCCATTTAAACACCGCCTTAAGC 95049 30 100.0 36 .............................. TTATGAGGTGCATTACATTGTACAGAATGTGAATGT 95115 30 100.0 35 .............................. GGTATGTCAACTACAGCAACTATAGTTTTTCCTCG 95180 30 100.0 36 .............................. AATTGATGTATTAATAGGGCAGAACACATTAACAAG 95246 30 100.0 36 .............................. AATGGAAGTTTTACTAATTTTTATGGTAGTAGATTA 95312 30 100.0 36 .............................. AGGTAACGCTCAGGACAACGAAGTATTTGGTTATCA 95378 30 100.0 34 .............................. GTAGCAGCTTCGATTAAACTTCCTATGAGTTCAT 95442 30 100.0 34 .............................. ATTTGCTTTTCTGTATTTAGTGGCTCCTTATTAT 95506 30 100.0 37 .............................. ATAGTAGAGGAGGAATAATAATTGGATAGTTGTACAA 95573 30 100.0 36 .............................. TTAAAATCAAATTCTTTTGCAGATAAATACCACATA 95639 30 100.0 35 .............................. AGTACATTTTGTGCAGTGGCTCGCCTTCCGCCTAT 95704 30 100.0 36 .............................. TATTGAAGAGCAAAGACCAATTGGTGCAACTGTTAC 95770 30 100.0 35 .............................. AAAGCTTCCTGAAAAGATATTTTAAGCACTTCTAA 95835 30 100.0 36 .............................. TTTATATTCAGCCCTGTTTTTTCTAACATGGCTTTT 95901 30 100.0 36 .............................. TGAGTTAGAAACTGTCTATTCTTATGAAGATTTATT 95967 30 100.0 38 .............................. AAACTCCCTTTTATTTCACCGTCTATGCAACTATTTAC 96035 30 100.0 36 .............................. TTGCATTGCATGATTATTTCTCCTTTTCGAGTTTTT 96101 30 100.0 36 .............................. TGGGTAACTATAAAACCATGGTTATTGTTGGCGGTA 96167 30 100.0 36 .............................. GGAAGTTTTTCTTCTTGTTGTACAATTTGTGTTGCT 96233 30 100.0 35 .............................. GGGATTTTTCTGCTCACCATTAAATTTTTGCCAAT 96298 30 100.0 37 .............................. TGGGTTCCTACCTTCTTTACTTCTATAGCCTGTTATA 96365 30 100.0 36 .............................. TGAATACAACGAATTGCCCATTGCCTAGACTTTTCT 96431 30 100.0 36 .............................. GTAAAATTCATGAATTTGAAAAATAAAAAAGAGATA 96497 30 100.0 36 .............................. TTGAGATAATTTGCTTGATTTAATGTTAAAAACACT 96563 30 100.0 36 .............................. TCATTCCCACATGGGAAAAATGTAAATGTGCCTACT 96629 30 100.0 35 .............................. CTAATGAAGCTAGTGCTATTGATATGTGCGTTAAA 96694 30 93.3 36 .......A............A......... TCCATATAATAAACTTGTATTTCACGGATAGTTCTA 96760 30 90.0 0 .......A................C.A... | ========== ====== ====== ====== ============================== ====================================== ================== 55 30 99.7 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : AATATCTACCCAACAATTAAATAGTAATATGTTGTTATCTGAAGAACAAATTATTTATATGTTAAATGAATTTTATAAAAAAAGAGCTGATGTTTCTTTCTACAATCAAATTATTGATTGCTTCATCTATAAAATTTATATTTACTTCGACAAAATATGTATTGTCTACAATCTGAATAATAGTAATAAAGACGTGACTTACTCCGATATTAATGAACTATATAAAAGTTCGCACCTTAACTCATGTGGTTCACCATATGATTTATAAAATTAAAGCAACTATCAATGATAGTTGCTTTTTGTTTTTTACTACTTGATAAAATTTTATTTACCATAAAATTACCAGCTAAAATTAAGAAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAACAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCATAAAGATTGATTTTTCTAGC # Right flank : TCTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTCTATTTAGAATTATTTTTCAATTCCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAGAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAACCTAATACGCCTGGAAGCATTCTTGATACAGCATCAATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAACCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 38455-37182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000001.1 Megamonas rupellensis strain An805 An805_NODE_1_length_194846_cov_99.5762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 38454 30 100.0 36 .............................. AGGCAACGCTCAAGACAATGAGGTATTTGGATATCA 38388 30 100.0 35 .............................. GGAGCGTTGGGCAGAATATAGGTACTTCCCAAGCC 38323 30 100.0 36 .............................. ATGCGTGTACGAGAATGATGAATTTGAGTACGAGCT 38257 30 100.0 34 .............................. TGTGCAGTTGGTGTTCCTTCGTATGGATATCCCG 38193 30 100.0 34 .............................. AATAATGCAACACACGCCACAAATGCGGATAATG 38129 30 100.0 34 .............................. TAAGGTACTTTGTCCTCATTTACTCGCTTTTCAA 38065 30 100.0 36 .............................. TCTATAATCATTTACTTTTTAGAGGTCGTGGCAGTT 37999 30 100.0 35 .............................. TTAATTGTGGTACACCAATTCCTCCTGGATATGCA 37934 30 100.0 36 .............................. AAATGGCATTCCATTTTCTACGGTATTTTATGGCGC 37868 30 100.0 36 .............................. AAATGGCATTCCATTTTCTACGGTATTTTATGGCGC 37802 30 100.0 34 .............................. AGATTGTTTTCAAATTCTCTAGCAGCTTTTTTAG 37738 30 100.0 38 .............................. ATGGAAAACGCAAACGTATAGTTAGAGGTGGTTTTTTA 37670 30 100.0 36 .............................. GAATTTAGTGCGGATATTAAACGACTTAAACAACGT 37604 30 100.0 35 .............................. TTTGCTGGGAAAAAGGAAAGCATAAAATTTGGATG 37539 30 100.0 34 .............................. TGCTAATAGAAGTGAAATTTTAAAAGAAAATAAA 37475 30 100.0 35 .............................. TTGCTGATGGTAAATCTTGTACTGAAGTTTTTAAA 37410 30 100.0 34 .............................. TCTCGTGGAGGTTCTTCTTCACTTAACGTTTTCT 37346 30 100.0 39 .............................. GCTGTTGTAGCAGGTTCTGGAATTGCTTATCTAGGTGGT 37277 30 100.0 36 .............................. GCAGGTAAAGTTGGAAGCGGAAGATAATAAAATGGA 37211 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 100.0 35 GATTAACAGTAACAAAGGTTGTTTTTGAAT # Left flank : TATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTACGATGTAAATGAAAAGCGAGTGCAAAAGGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCGGTATTTAGAGGAGAGATAACACCATCAAAATTAATGAAATTAAAATTGGAACTACAAAAAGTTATAGTAGATGAAGAAGATTTTGTTTGTATTATAAAATTAATGAATGATAATGTATTTGGTGAAGATATTTTAGGTAAAAAAGATATAGAAAATGGAGAAAGTTTGATTTTATAAACTAAATTTTACCAGGCATAAAAATAAGTATATGTATATAAACCCTTATAAATACAAGAGTTATAGCAAATTTCTTTCATTAAAGAAATAAATGCATTATGCCTGGTAATTTTTACTTAGAATGTTGAAATATCAAGGCTTTTGAACTATATTATAAAATGTAAAGTCTTTAAAAACGAGGG # Right flank : CCAAGAATCCTCTGTCTTTAGATATGGGGAGTATGTCAATATTTGTATTATGGTGATGTCTATGATGACTGTCAGTGCAAATGCGTTTGATGATTTGAAAGATGACTTAAAAGATGATCAAGCATTGAAATTAGCAACGGGATATCTAGTTGCTAATGAGGTGCAACGATTAACGAAAATAAGTGCATTAGAATTATTCTTAGCTTCAACAGCAGTTAATTATATGGACAATAAAGATCTAACAAATGCAGTAGTAAAATCTTTAGTATATCAGATAAAATTTTAAATGATGGCATAAACATAAGGATGTTGTTTTGTATAGAATGATATTCTTATGTTTTTTTATTAGATGAAACCTTAGTAATATGTCTTTATAGTATAATTGAAAAAAACTATAGGATATGATGATATGAAGGATAATTTTAAATTGGAGATGACAACAGTATGGTCTTTTCCTAAAAGAGGCAATTGGGCTACACATTCAGGAATGTATCGTGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAGGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 116286-116441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000001.1 Megamonas rupellensis strain An805 An805_NODE_1_length_194846_cov_99.5762, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 116286 24 95.8 42 ......T................. ATATTAGATAATTTCTGGCTAGTAAAAGTGTATGAGTTTTCG 116352 24 100.0 42 ........................ TTTGTGATTTATAAGAATATCCCAATTTATAAAATGTTTTCG 116418 24 95.8 0 .......................C | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 97.2 42 TACAGCATCTGTTGATATTTATCT # Left flank : TATTACATAGTCAAGAAAAAAGTTTACATATTTACATATTTTTTACTAATAAAATAACTTTTTATGCTGATTATTCTATCTTTATAGCTTAATAAATTATTATAACAAGGATAAACTAATATTTATTTTATTTAAACTTCGCCAATAATGTAAAATAGAAAATCTAATAAATTTTATCATTGTAAAACAAAAAAGCCGTAACCTTTTAATAAAAGGCTACGACTTTATTTCTTAATTATTCAGCATATATTTTTAATCAAAATTTACCTTATTTTTATCTTTTTCCTTCCTATATAATATAGGCTATTTTATATTTAAATATTTATATTTTTTTCTGTTCTTTTTATAATAGTACGTTTTCAGTACGTTAATTTTAACCGCCATATATGAATATAACAAGATATCAATTAGTTTTGACTAATAGTTATATATCAAAATATGGCGGTATTTTTATTAACAATAACCGCCATACTTAAATAATACATATTTAATTTTCTTTA # Right flank : CTAATGTTATTAGGATTTATTAATTACATTATAGTTATAAACTATTAATATTGCAAGACTTTAAAAAGATTTACCAGCAAATGGCAAATATTGGTTATAAATCTATAAAGTTAGTAATCACAGTAGTTATTAAGATTCTATAAAAAATTAGCTGGTAAAATATGTGCAGCATTAATTAACATAGTAATATTGATCCAACATTAATTTAAATTTTTCATTGATTGATACCAAAGTTAAAATGATACGATATATACTATAAATAATCTCATTATCTTAAAAGCTGATGTAGTTTTAAATGGCTGCACCAGCTTTTTTTATTTCACAGAAATAGTCATCATCTTTGGCGGTATTCTTAGTTATTACAAAATCAGCTATTTTTATAATATTCCTTACGACCATTTTATAAAATCACTGGCTTTTGTAATATCTATAAAATAGACTCACGCTGATGAACGCTTATATAATTTTTACATATCTTTTAAAGCCTTAATTAGAGTTGA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACAGCATCTGTTGATATTTATCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 121516-121678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000001.1 Megamonas rupellensis strain An805 An805_NODE_1_length_194846_cov_99.5762, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 121516 30 100.0 36 .............................. CAACTCAACGACAAAACGTCGTCGAGTTTTGGACAA 121582 30 100.0 37 .............................. ACGATAAAGGTATGAACAAAACGTTCACTCCTGCTGG 121649 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 CATCATGGTTATATAAAGTTAATTAAAGCC # Left flank : CATTTATAGAATAAATACTTACATTGCCACCTTTACTAGCTTGTTTTTTTATAAATCCCTTATTAGCAAGATTAGTTAAAGTATTTAAAGCTGTTCTTGACGTAATATTTAATTTTTTAGAGATAAAATTACAACTACCTAGATAGTCTTTACCAGCTTTATTAAAACTTAAAATAATTGATAATGTGTGTACTTCATTTGGTTTTAATCCAATGTTAAATAGAACATCATAATATTTATAAAAAGCAAATTGTTGAGTATCTAATATTTCAAAAAATGTTTTATTGAGAAGTTCGCCACCTCCTGCCATTGTATCGCCCCTTTCGGTTATAATAGTTGTTTTACTTTTATAGTTTGAATCTGATTGTTGAATTATCAATGAGGTTTTTTCTGCTGTCGTGAATTGCGACATTGATAAAATTAAGATTGATTTTATAAGTTTTTCCGAAAAAAAAACGGAAAAAGTGAATTTGTTCATTTTTGAACGAGTTGAAATACAT # Right flank : CCCGTGATAGGGGCTATTTTTATTGATTAATATTTCCGCCAATAGGATTTATTTTACTTTCATAGAAATGGCGGTTTATCTTGCCTTTTAGCGTGATTTTGCCCATTGCTTCTACTTCTTTATTCATTTCTCTAATGAGTTCATAAGCCTTTGAAATGGATATATTGCAATCTTCGGCAATCTCTTTGGCGGTTATAAATCGACTTTTTACAGTTTCCATATTTTAAATTCAGCCCTTTCATGATAAAATTTACTTGCTTTTAAATTTTGTATGCTCCTTGTCTTAGTGCGAGGGGCTTTTTTTATATTCATATTTAGCTATTAAAGTTTCTAAGTCCTTAGCTGTAATATGAAAAGCTGAGCCAGTTATAATATTATCTGTATTATTACTAAAGTCTAAATACATATCTTTTAAGCTCTTTAATTCATCTATAAGCCTGTCAAAACTCGTAGCTTTGATTTTAAGCGTTATTAGATTATCCATGTATATAAATCCTCCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCATGGTTATATAAAGTTAATTAAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 8882-6680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000040.1 Megamonas rupellensis strain An805 An805_NODE_40_length_12661_cov_78.5014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8881 30 100.0 34 .............................. AGCGGTCGCAATTTTGATAAAGAATGGGGCGAAC 8817 30 100.0 36 .............................. GTAGCAGCAGTAATGGTCCCGACAATGGTATCGCCA 8751 30 100.0 35 .............................. AATTTTTCTGCTACTTCGGTTTTGAATTGTTGCGT 8686 30 100.0 35 .............................. TGTACGCATCTAATAGCCCATTGCCGGCTTTTTTC 8621 30 100.0 36 .............................. TTCTTGCCTGCGCATTTACTTCTTGCGCGTCTGCAT 8555 30 100.0 35 .............................. TGTACACAGCGGATAGCCCATTGCCGACTTTTTTC 8490 30 100.0 36 .............................. GCATTTGTTTAGCCAAATTCCAAGAGCAGATATACA 8424 30 100.0 36 .............................. TACGTGCTTGCGCGTTTACTTCCTGCGCATCTGCAT 8358 30 100.0 36 .............................. TGTAGCTGGGTTGAACGTGTTGCAGATAATGTATTA 8292 30 100.0 37 .............................. TATATGACGATTACGGAACTATAAAACTTAATAACGT 8225 30 100.0 36 .............................. ATAAAGAGATTTATGCTCAAGGTACTGCCGAGGACA 8159 30 100.0 37 .............................. TTAAGTAGATACACAATTAAGGATGTAAAAACATGAA 8092 30 100.0 35 .............................. ATAAGATGGACGGAGAAAGTTATGGTCGTTCATTT 8027 30 100.0 36 .............................. AGATAAATAAAGAAATCCTAGAAGTATCAGAGAAAA 7961 30 100.0 35 .............................. TGTACGCATCTAATAGCCCATTGCCGACTTTTTTC 7896 30 100.0 36 .............................. ACCACGAGCCTTGCCATCTTTTCGCCTTTTCTCTAA 7830 30 100.0 36 .............................. GATGAAAAAGGGATATCTTTATATGAAAAAATATTA 7764 30 100.0 36 .............................. TTGTAAATCAAATTGTACGCCCTAAATGGAAGGGCG 7698 30 100.0 36 .............................. TGAGAAACAGAATAAAGAACTTGTAGATAAGCTTAA 7632 30 100.0 35 .............................. GCTGAAAGTGATAAATTCCATAAGCCAAGATGTAG 7567 30 100.0 36 .............................. TACTACGATAGCGGTAAAATTGATGAGCTATATAAA 7501 30 100.0 37 .............................. TTTGGTTTTCTATTTTTAAGCCAAAAAATGCCCGCCG 7434 30 100.0 35 .............................. GAAGAAAAATTTAATATCAAAGATGGTATCTCGAT 7369 30 100.0 37 .............................. GCCGTTGGTTCTGCTTCTATAGGTTCTTGTGGTATTT 7302 30 100.0 39 .............................. ATTTCAGCCAACAAAGAAACGTGGGTATGTCTAAAAGTA 7233 30 100.0 36 .............................. GATAGAATAGCACTTAAAGAATATAAACAAATGAGA 7167 30 100.0 35 .............................. ACCGTTGGTAACGTTACTTTTGAGTCTTGTGCTTA 7102 30 100.0 36 .............................. TTTTGCTCTATTTTATTCGCTACATCTTCTGCTTTT 7036 30 100.0 36 .............................. TACAAAAGACAGAAACGTTGATGGAATAACTGTTTT 6970 30 100.0 36 .............................. ATGAACGCGCCAACGCCTCAACAAATGCAAATGCAA 6904 30 100.0 35 .............................. TTTATATTTGAGCCATCTTTAATAATAGCCATACA 6839 30 100.0 36 .............................. CTATAAACGCAATAGCCATACCAAATGATAATGATG 6773 30 100.0 35 .............................. GCGATTACTGATGAAAAGATATATACTTCTGTATT 6708 29 76.7 0 ...............TT..A-.....CT.A | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.3 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATACTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGTTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGGCCCATACCTTTTAATTGTACAGGACCAATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTCGCGTACTAGTATAATCAACTTTTTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAACAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATCGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCGATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 48-2243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJU010000056.1 Megamonas rupellensis strain An805 An805_NODE_56_length_2243_cov_74.5817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 48 30 100.0 36 .............................. TATGGATATCCCGTTTCCCCATATAAAGCACCTGTA 114 30 100.0 34 .............................. GAGAACGATTACTATTAGGACGTCAATCACTTGA 178 30 100.0 36 .............................. AAAAATATATAATAAAACTATAAATTTGCCACAGAT 244 30 100.0 37 .............................. GTGCCGGTGTTACAGGTAGAGATATGGAAACGCAAAC 311 30 100.0 37 .............................. TCTCTAGTTTCAGAAACGAATAAGAGTCCATTCTGAA 378 30 100.0 37 .............................. GTGCCGGTGTTACAGGTAGAGATATGGAAACGCAAAC 445 30 100.0 36 .............................. TACATTTAATTTTTGGTGCAAATGTATGCATGTATT 511 30 100.0 34 .............................. TTATGGATAAAAATAATATTAAGAAAATAATAGA 575 30 100.0 36 .............................. GAATATAGGTTTTTCTATAAATAATGCTGATAAAGC 641 30 100.0 34 .............................. ATAAAAATGATTTAATTTTTGGAGGAATATAAAA 705 30 100.0 35 .............................. CTTGTCCTGTTACATCTGTAACTACTTCTACGCTT 770 30 100.0 33 .............................. TTAAGCGAGTTTTTTAAGTTCTTAATTCGCTTT 833 30 100.0 36 .............................. TGGCGATACCATTGTCGGGACCATTACTGCTGCTAC 899 30 100.0 36 .............................. TTGGCTTACACCCATACTTGGATAATCTCCTCCACT 965 30 100.0 35 .............................. TCCGCATAGGTCGTCATGGTGCCACCTAGTCATTA 1030 30 100.0 34 .............................. GGTATTGTTTGCATATTCCGTACCTCCTAAGCAA 1094 30 100.0 37 .............................. TAGCAGAAAAAGCCACTCCTGTTATACAAGGCATAAA 1161 30 100.0 38 .............................. TTTTTGGTACTAGACTTATATGTTCTCTCATTATTGTA 1229 30 100.0 35 .............................. GAGTTAGTAAAAATTTATAAGGTTTATTTGATTGT 1294 30 100.0 34 .............................. GTTATACAGGGCAAGAAAACATTATCCGGACCGA 1358 30 100.0 36 .............................. GCAGCCAATTCTTGTATAGAATTAGTAATACGCTGT 1424 30 100.0 37 .............................. TTAGGAATGGTATCAAATGTAAACCCCCTAAATATTA 1491 30 100.0 37 .............................. TGTCTGCAAGTGCTGCGCAACGTAATGCCGCTGCGCA 1558 30 100.0 35 .............................. TCCAACATATTAAAACTAAGCAAAGAGCAAATATT 1623 30 100.0 36 .............................. ATGTCCATTTTAATTACCTGTATTTAATGTGATTGT 1689 30 100.0 38 .............................. TTCAACGTTGGCAGTAGAAGTAGTCGAACCATTCCAGA 1757 30 100.0 36 .............................. TCCAGAATTACTGGATAGCCTAAATATGGCACTAAA 1823 30 100.0 36 .............................. AGATGTTATAGAAGATTTTTTGGTTAACTATTGCTA 1889 30 100.0 34 .............................. ATATAGCCATACAATGTGAACATGGAGCAGTGTA 1953 30 100.0 35 .............................. AAAATAATAGCACACATATGGGATGACATAAGTAA 2018 30 100.0 36 .............................. TCCAGAATTACTGGATAGCCTAAATATGGCACTAAA 2084 30 100.0 36 .............................. AGATGTTATAGAAGATTTTTTGGTTAACTATTGCTA 2150 30 100.0 34 .............................. ATATAGCCATACAATGTGAACATGGAGCAGTGTA 2214 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 34 30 100.0 36 ATTCAAATACAACACTTGTTAAAGTTAAAT # Left flank : AAAGTTAAATAGTGGTATTGTTTGCATATTCCGTACCTCCTAAGCAAA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAATACAACACTTGTTAAAGTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //