Array 1 17903-16680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYJ01000041.1 Neisseria meningitidis strain NM2025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17902 36 94.4 30 ........G...A....................... AACGGCAACCCACTAAATTTTGCAAATGCG 17836 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17770 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17704 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17638 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17572 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17506 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17440 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17374 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGT 17308 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17242 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17176 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGT 17110 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAT 17044 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 16979 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 16913 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16847 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16781 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16715 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //