Array 1 111695-113426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOC010000002.1 Listeria booriae strain FSL L7-0025 NODE_2_length_580886_cov_23.920516, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 111695 30 100.0 36 .............................. TATTGTGTTGCAGCGATAAACGGAAGCGTGATACAA 111761 30 100.0 35 .............................. ACAACACAAAGTATTTCAACTGGTACTAAAAAATC 111826 30 100.0 35 .............................. TTCCATGATGTAATTGCTCCAGTATCTGGATGACA 111891 30 100.0 36 .............................. CTAGAAGGCTCGCTAACAACATCAACAGGTGAATCA 111957 30 100.0 36 .............................. TCTGTTACTTTAGAAAATGTTATTTCTAAATCATCT 112023 30 100.0 36 .............................. AACCAAAATTTCCACTCACTAATTAATTTTACTCAC 112089 30 100.0 34 .............................. AAATCGTGCTAGCATGAAACGTGATGAACTCAGA 112153 30 100.0 35 .............................. TCAGATGCAAATATGCAGTACTCCAACATTTCATA 112218 30 100.0 36 .............................. TCTAGCTAGCTCCTGTACATTTACTTGATAATCCTT 112284 30 100.0 36 .............................. TTTAGAGCGCGTCTCTAGTGGATAAGGCGGATCAGC 112350 30 100.0 35 .............................. ACGACGGCTGGATTTAGTGATAGTAAACAGGTAAT 112415 30 100.0 35 .............................. CTAGAGGACTGTGTTATACGTCTTCAATACAACAT 112480 30 100.0 36 .............................. GTTTTCTGCTAAGATAATCCGTTGCAGTCTTGCTGT 112546 30 100.0 35 .............................. TAATATTCGCCTGGATAGTCCTTAATTGTATCGTC 112611 30 100.0 34 .............................. TTTCTTGCATCTGAATGTCTGCGACACACACTTC 112675 30 96.7 36 .............T................ GCGGAATACGATGGCACGGAGAAAAAAGATATTGAT 112741 30 96.7 37 .............T................ CACTTCGCTATTTGTTGTTTTTTCGTAATGTACTCTC 112808 30 96.7 36 .............T................ AAAAAAGGCATGGGCGTACGTAATCGAGTCGAAGTT 112874 30 96.7 37 .............T................ CGAAAATTAATTCGGGGGTCTTCTCATGTTTATAAGC 112941 30 96.7 36 .............T................ GAATATAACGGTCTGAAAGCTGGAATCATTGTAGAT 113007 30 96.7 37 .............T................ TTGAGGCGGCATTATCGGGCGACGTCAAACCTGTAAC 113074 30 96.7 36 .............T................ AGATTTCTGCAGTTGCAGAAGCAGCTGGACAACTTG 113140 30 73.3 29 .............T.....A..TC.A.TCG TCATTGTCCAGATCGTTGACTTCCGTTGC 113199 30 96.7 36 .............T................ AAGTTTTGGCGATTCCCCCGAGATTCCGTATACGCC 113265 30 96.7 35 .............T................ TTATGATGCTCGGGCACGCAGGTTACTGGATTGAT 113330 30 100.0 36 .............................. TTTTCAAAAGTTGCTTGAGTGCCTAGCTTCGGATTA 113396 30 90.0 0 ........T....T...A............ | T [113412] ========== ====== ====== ====== ============================== ===================================== ================== 27 30 97.5 35 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TCAAACAGATGTGGCATGGGCGGAGTTTGAAAGATGGTTTTTATCTAATATGAATCTAGACTAGATGGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGTCTCAGGTCGATGTGCTTATTACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 803191-802693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOC010000001.1 Listeria booriae strain FSL L7-0025 NODE_1_length_1059353_cov_27.832105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 803190 36 100.0 30 .................................... CCATGGCAGCTTATTTAGCTGATGTTAACA 803124 36 100.0 30 .................................... GCAACAACTAATTCATATACACTTAATAAT 803058 36 100.0 30 .................................... ATTATACAGTAGAATACAGGGCGAGCGACA 802992 36 100.0 30 .................................... ATGATCCAAGAATGCGCGGAGAACAAGCGT 802926 36 100.0 30 .................................... TTAAGTAACAAGCGCTATGTAAAGATTTAT 802860 36 100.0 30 .................................... TCGTGATAGATATGAGTGTCAATTATGCCG 802794 36 100.0 30 .................................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 802728 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : TCAGAATACTGTACAGATATCCCCATATCAAATATCTCCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCGTCTTGAAGTGTGATAGGTAACGCTTTGCTACCATCTTTCTTCAATAAACGTATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAACAGGTTACATCACTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCACAGTAGAGG # Right flank : TTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTACTGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATTGTTTCCTACCTCTTTCTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 912753-913174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOC010000001.1 Listeria booriae strain FSL L7-0025 NODE_1_length_1059353_cov_27.832105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 912753 30 96.7 35 ............T................. CAGTAACAGAGAATGAAACAGATGTTATCGAATTT 912818 30 100.0 36 .............................. AAGAAGAAAAAATCTGGGTTTGCGAAACAAATCGAA 912884 30 100.0 35 .............................. TCTCTTTAACTTATACCCTTATTATACATGTTCGA 912949 30 100.0 36 .............................. ACCTTTATTTTGAAAACGGCGAAAGGGTTCCAGGCT 913015 30 100.0 34 .............................. TTGACCTTGAAAAACGGTTTTACAGCACAAAATG 913079 30 90.0 36 .................A........G.G. AAGGACAAAGGCCAAACGGTACATTTTACAAACCCG 913145 30 73.3 0 .......C.C.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 94.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGCCCTCCAGTAGTGCAAAATAATGGGGAAATCGACAGATTTTTCTTAAGCGATGGTGTGATTGGGTTTAAGGCTATTTTTGAAGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : ACTGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGTAGCGAGTAAGCTCTAATTTCTAGCTCTCATAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTTTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTGTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAGATAGCAGCGATCTCTCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 127875-129486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOC010000007.1 Listeria booriae strain FSL L7-0025 NODE_7_length_181247_cov_22.556239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 127875 30 100.0 36 .............................. ATCTTAAACAACAAACGGCTAAACTGGATGTTATTG 127941 30 100.0 34 .............................. ACCTCCATTTATATCACCCCTCAAAGTGATTATA 128005 30 100.0 37 .............................. AAGAAAACGAAGAAGACAAGTTTCAATTGAAACAAGA 128072 30 100.0 36 .............................. ATTTGAAATGAGGGGGTTTTATTGTTTATTGTATTA 128138 30 100.0 36 .............................. ATGCTTAGCTGTTCTTACTTTTCGTAAGTGGTTATA 128204 30 100.0 36 .............................. ACTGTATACACGACAAAGAGCGATGACATCCATTAC 128270 30 100.0 36 .............................. AAGAACATCCCGGTGTAGTGATAACTTTTCGTCCAC 128336 30 100.0 35 .............................. TCCTAAGTGAAAAGCGATGGGTTGAAATGGAAAAC 128401 30 100.0 36 .............................. TTGATTTGACGTGCAAAATCAACAATCGAGAGATTA 128467 30 100.0 36 .............................. AAAAATAAACCAGCTCAGCTAAAAGCGCACTTGGTT 128533 30 100.0 35 .............................. TTACGTTTTAGAATGTCCGCAGCTAGTTCGATACA 128598 30 100.0 35 .............................. CCGTGCCCGAATCGGCAGACTTCATTTATCTCAGC 128663 30 100.0 36 .............................. ACATATGAACCAGAAATTTGGCAATTACCAGTTATC 128729 30 100.0 36 .............................. TTTTTATACTTCCCTGTCAATGATTTTTCGGCAGCT 128795 30 100.0 36 .............................. CAAAATTAGGAGATGCTTGGCTACTTGGAAAACATC 128861 30 100.0 36 .............................. AGGAAAAGCAATAGTTCCACAACGGTATCGTTAGGA 128927 30 100.0 35 .............................. AAGGCTGAATCTATTCAATAATAAAATTAGTTTTA 128992 30 100.0 37 .............................. CCGTGTATGTACGGAATCATCTCCTTGCACGAATAAG 129059 30 100.0 36 .............................. ATGTCTATTGCTATATCGGTGATTTTATTTTTAAAA 129125 30 100.0 36 .............................. ATTGCTGAACTAGATTCAACGTTGATTGCAATGTAT 129191 30 96.7 36 ....G......................... CAGATAACGTCGACACTTCCGATAGATCGAATAGTG 129257 30 100.0 38 .............................. GTTATAAAAGAAGTTGCTCCAACTGTGCTTAAAGTTGC 129325 30 93.3 36 A................A............ TAGTGTGTCCAGCCAAATCTCCCGGGCACGTATGTG 129391 30 93.3 36 ....................A.....C... GGAGCAGTTGCATTTGATGAAGAACATGCCTATGAA 129457 30 90.0 0 ........................A...TC | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 98.9 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTGATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGAGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAAGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGTGAGGAACAAAATGACTATGGAAAAATTAATACTACGAGTCACCGTAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 20365-25279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOC010000016.1 Listeria booriae strain FSL L7-0025 NODE_16_length_40958_cov_22.480101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 20365 36 100.0 29 .................................... TAATTCACAAAATACCTAACGAATGGACA 20430 36 100.0 30 .................................... GTGCTGTATCTATTAGATTGTGGAAGGAGC 20496 36 100.0 29 .................................... CGCTGGACAATCATATAACACAAGCCCTA 20561 36 100.0 30 .................................... ATACTATGGGCGATGAAGGCGATATGTTGT 20627 36 100.0 30 .................................... TATTTTAATACGCAAAATGGCTATATTGAT 20693 36 100.0 30 .................................... TGCAAAAGGCAGAAATGGGTGCGAACGCAA 20759 36 100.0 30 .................................... TAGTTTGGTCAAATGGAACAAAACCAACTG 20825 36 100.0 30 .................................... CATTAAATGTGCTTGATGTAATACTTTTGA 20891 36 100.0 30 .................................... TTATCCTCCGTGGTATCGTCCCATGTGATT 20957 36 100.0 30 .................................... GTGTCCCGTTCTAAAAATTGAAGTTCATTT 21023 36 100.0 30 .................................... AGGATGTATTAAAACATGTGATTGATCGGT 21089 36 100.0 29 .................................... TACCATAATTGTTTGTGGTTGAATGTTTG 21154 36 100.0 30 .................................... AGATGTTGTGTTTTATGTCAGAATGATTCA 21220 36 100.0 30 .................................... ATACAGGCGCTGGGTTACTGTAGAAGTCAT 21286 36 100.0 30 .................................... TTAGGAAAGGTGGTGCTAAGTTAGGCATGG 21352 36 100.0 30 .................................... GATTTCTAGATTGCCTTCTGTAGCCCCATA 21418 36 100.0 30 .................................... TCATCATTCGTTCGAAACTGATTCTAATGT 21484 36 100.0 30 .................................... CGTCTATCGTCAATCGCCTTGGACATCTTA 21550 36 100.0 30 .................................... ACGATAACCCCGAATTATTGGAAGAGGGTG 21616 36 100.0 30 .................................... ATTATGAGTTCTACGAAGTTTGGGCGGGAA 21682 36 100.0 30 .................................... ACATGAATATGATAAAAGGACATTCGTACA 21748 36 100.0 30 .................................... TCAATGCAAAATCTTCTAATACCTCTGTTA 21814 36 100.0 30 .................................... TGATATCTGTAGTCACTCACTTTTTGATAA 21880 36 100.0 30 .................................... TTAAAGAGGGTACTGATAGCGAAATAAAAA 21946 36 100.0 30 .................................... AACTTCGTGCTTAACGCGCTCGAGTCGCTT 22012 36 100.0 30 .................................... CGTTCATTGCCGTAGCAGCCGTATTTTTAA 22078 36 100.0 30 .................................... AGCTGTTAGTGATTTTATTGATAAAGCTAA 22144 36 100.0 30 .................................... AATGGATACGCAAAGACGGCCGAGATGCAA 22210 36 100.0 30 .................................... ATCCTGGAAACGTGGTTCATCCATCTTAGC 22276 36 100.0 30 .................................... ATTTCTTTGAAGATATTACAATCCGAATGA 22342 36 100.0 29 .................................... ATTTATTGGTGAGAGCACAGTTATCTCAA 22407 36 100.0 30 .................................... TCAAAGTGCATATCTTGAATTTAGGCTTAA 22473 36 100.0 30 .................................... GTATTACTTTGAAACCATTATCTTCGCCTA 22539 36 100.0 30 .................................... TTGTGCCAGTTGAATTAATTGTAAAAGGAG 22605 36 100.0 30 .................................... TGATGCGCGATGTGGACAACGTTGTTGGTG 22671 36 100.0 30 .................................... AAGACCTAGGCGTGTTTGGAGTTAAAACGA 22737 36 100.0 30 .................................... TCTGCAAAACCTACATGATTCAAGACGCTA 22803 36 100.0 29 .................................... CACACATCAAGCGACAGAGGTCAAATCTT 22868 36 100.0 31 .................................... GTATGGACATCATGACCGTAGACATCCCACA 22935 36 100.0 30 .................................... GCTTTCTTGGTGTCAATGAGTACAGTGTCT 23001 36 100.0 30 .................................... ATCACATGAGTGACCTATCCGATTTTATAA 23067 36 100.0 30 .................................... ATATATAATAAAACAAAGGTGGTAATATTA 23133 36 100.0 30 .................................... TCTACCTTGTGTACTGTTAACGTGCCTTTA 23199 36 100.0 30 .................................... ACATGGACGAAAAATACCACGCCGCGCTAA 23265 36 100.0 30 .................................... TAAAACAAGTGAGCCTAGCTCATGGCCAAG 23331 36 100.0 29 .................................... CTATAAGGAAGTAAGGGGCGATGTGTATA 23396 36 100.0 30 .................................... ATTGAATGGGTTACAGTATAAAAAAGGTGA 23462 36 100.0 30 .................................... AGGGGTACACGTAAAGCAATAACGAATAAG 23528 36 100.0 30 .................................... TGGGGCATTAATTATTCAGACCGATACAGG 23594 36 100.0 30 .................................... TTAATTTCTTTTTCCATCCCGCACCTCCTA 23660 36 100.0 30 .................................... TAATTATGATTAACGAAAGGCTATACATTA 23726 36 100.0 29 .................................... TCGCTCGATCTGATAACTCCTCACATTGA 23791 36 100.0 30 .................................... AACTAGATAATAATGGGTACTTGTCATTCT 23857 36 100.0 30 .................................... TTTATTCTGATGACAAGCGCGGTGCAGTTG 23923 36 100.0 30 .................................... AGGGCGTGTTGGATCAGATGCAGCAATCAG 23989 36 100.0 30 .................................... TCACAACACGTCTAGGCGCATTGACTACCA 24055 36 100.0 30 .................................... GATTAGGTTGGCTTCATTAACGAAGCGTTT 24121 36 100.0 30 .................................... CAAAAATAACGTGCTGTTCCTGGTCCACAG 24187 36 100.0 30 .................................... TGATTTTTGGAACGATGATTTCAGACATTA 24253 36 100.0 30 .................................... AAAAGTGCTGGTATGCTTGATAACATAACA 24319 36 100.0 30 .................................... CTTTATTTATAGCATCTTTTCTAGTTTCTA 24385 36 100.0 30 .................................... AGAGTGAGGGAGTGAGCAGTGTGTGAGTGT 24451 36 100.0 30 .................................... TGAGTGAGGTGAGAGGAGGAGAGTGAGGGA 24517 36 100.0 30 .................................... TTGGACAATTACGCCTGTTGATTCTAAGTG 24583 36 100.0 30 .................................... CAAATGTTCAATTAAAACACTCAACACCTA 24649 36 100.0 30 .................................... TTATTACGCATTTGAAAAACAAATTGCCTA 24715 36 100.0 30 .................................... CAAAAGCATCCGTACCTTCTAGCATAACGA 24781 36 100.0 30 .................................... CTTATACAGTTGTGAATCACTATTTACTGC 24847 36 100.0 30 .................................... AACTACTTTTGTATGCATCTACTTTTGCTT 24913 36 100.0 30 .................................... AGTGAAGCATCAAAAGTTACAGGACAATCA 24979 36 100.0 30 .................................... TCTTTTGTTTGCGCTTCTCTTCTTTTCTCT 25045 36 100.0 30 .................................... AGTTAGTAGGTAAATTGATAAGTGTTGCTG 25111 36 100.0 30 .................................... ACGGATAGGGGGAGCTCAGTGGGTATTTAT 25177 36 100.0 30 .................................... ATATATTACGTCATAGCGTATAATATGGTT 25243 36 75.0 0 ...................C...AAA..CC...CCA | G [25270] ========== ====== ====== ====== ==================================== =============================== ================== 75 36 99.7 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACTCTTGTTTTTGTGGAGGGATTTAGGTATGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATATTACGGGAAATGGCTAGAAAAGGTATGCATGTTATTGTACTTGACGATAATTTGGTAGGTGCCTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAGCTCTGAAGACTTTCTACAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCCGAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATATTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : ATTGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTGGACACGGTCATTTACATGAGGATTCGGGATTTAGCCGATGCAACCCATGTTAGCACAACGACGATTTTACGATTTTGCAGGAAATTTGGGTGCAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACCAAAATAAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTAAAACGCACAGCTCAGCCTGAATTCAAGGCGAATATTGCTCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATCGCTGAATATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //