Array 1 30998-27785 **** Predicted by CRISPRDetect 2.4 *** >NC_014147.1 Moraxella catarrhalis BBH18, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 30997 28 100.0 32 ............................ ATAGCTCACCCAATCAAATTCACCACGCCAAA 30937 28 100.0 32 ............................ CAAGGCTATCAGCGGTCGCACCGTATTGACTT 30877 28 100.0 32 ............................ ACGGTGGCTCAGGGCAATCCTGTACCGATTTT 30817 28 100.0 33 ............................ CTTTGTGTTCATCAAGAAAGGTTTTGATGGGCA 30756 28 100.0 32 ............................ CTGACCAGTCCATACGCTGATTGTTAATGCCG 30696 28 100.0 32 ............................ GCATGGACAAACCAAAAAATATGTCTGTGAAA 30636 28 100.0 32 ............................ AAATCAAGCCAGATGCTCGCTTTGTGTCTTTA 30576 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 30516 28 100.0 32 ............................ GTTATGTTTAAAATCGCTGTGTTATCATCTTT 30456 28 100.0 32 ............................ ATCGTTCATGGCGAAATGCGACAAGGTGGCTC 30396 28 100.0 32 ............................ ATATCTGCCAGCCCCTCAGGGAAACCCTTGGC 30336 28 100.0 32 ............................ AATACCCATCCTGCCACCACTTGTATCCAGCC 30276 28 100.0 32 ............................ TATTTTTTTCCAACTGCTTGAGCGGTTTATCC 30216 28 100.0 33 ............................ CTTGATTTGGCGGGGTGCTGGTGGGCGTAAGCT 30155 28 100.0 32 ............................ TGATATCGTACCGCTGCCTATCAAGTCACCGT 30095 28 100.0 32 ............................ CCAGTTAGCACAACTGGGGCAATTTATATTAA 30035 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 29975 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 29915 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTC 29855 28 100.0 32 ............................ CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 29795 28 100.0 33 ............................ CCGCTCCCCAACCCCACCGAGTGAACAGGTATG 29734 28 100.0 32 ............................ TATTAGATAGCTGTACAATACCTGCATTATTT 29674 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 29614 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 29554 28 100.0 32 ............................ ACTATTTATAATAAGATTTCTGCCCCCAGCGG 29494 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 29434 28 100.0 32 ............................ TTTCATGCAAAATTGTACCCCCTTTGTGCAAA 29374 28 100.0 32 ............................ TTTTGGTTGATTATCTATTTCAGAAACTCTAT 29314 28 100.0 33 ............................ CCGACCCCCTTACTTACTGTATATAAATCACCA 29253 28 100.0 32 ............................ CTGTGCTTGAGTCTCTTGGGACTTCTGATAAG 29193 28 100.0 32 ............................ TGCAAATATGCTTTTGTTTGGTACGCCAACAA 29133 28 100.0 32 ............................ AATAGCTAATCGCACGAAATACGCCAGCCAAT 29073 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGATAAATCTTTGCCAA 29013 28 100.0 32 ............................ CTTGATGTCAAAATTCCCTTTGGAATCTTTAA 28953 28 100.0 32 ............................ TTTGTCTTGATAAAAATTAAATTCTTGTTTAC 28893 28 100.0 32 ............................ ATACACACACACTTTAATACCATTTTTGGCGG 28833 28 100.0 32 ............................ CGACCAAAAGGGGTCGGTACTCTTTCTTCGTT 28773 28 100.0 32 ............................ GCTGTTTTGATTACCGAAGCCAAGCAGCGGCA 28713 28 100.0 32 ............................ AGTAAATCAAAAACAATAGCCGAGAAAATACT 28653 28 100.0 32 ............................ GCACAGCTTGCAAATAAAGCAAGCACGGCAAC 28593 28 100.0 32 ............................ AGAGCTGACCGCCCATTGGGTTTTTAGCACAT 28533 28 100.0 32 ............................ TAAAGGTGTTGGCAATGTTACTTATCATAAAT 28473 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 28413 28 100.0 32 ............................ TACAACACTCACAGGCTATGGTATTGGTAATG 28353 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 28293 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 28233 28 100.0 32 ............................ CGTAGCATTCAACGCATCAATCGTATTTTTGA 28173 28 100.0 32 ............................ TTTGCCATAAATCTCACGCACGGACTGCCGTC 28113 28 96.4 92 .........................C.. CGCCACTTGGGCAGTGGGTGGCTGAATCATGGTAATTATTTGGCGTATGGTTTGTAGAAACGCCACTTGGGCAGTGGGTGGCTTGGCTTGTT 27993 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 27933 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 27872 28 96.4 32 .....T...................... TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 27812 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 53 28 99.9 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //