Array 1 108047-106383 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJG01000001.1 Salmonella enterica strain BCW_2032 NODE_1_length_587695_cov_3.46199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108046 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107985 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107924 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107863 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107796 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107735 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107674 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107613 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107552 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107491 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107430 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107369 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107308 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107247 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107186 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107125 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107064 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107003 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106942 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106839 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106778 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106717 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106656 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106595 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106534 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106473 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106412 29 96.6 0 A............................ | A [106385] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125430-124304 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJG01000001.1 Salmonella enterica strain BCW_2032 NODE_1_length_587695_cov_3.46199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125429 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125368 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125307 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125246 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125185 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125124 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125063 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125002 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124941 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124880 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124819 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124758 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124697 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124636 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124575 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124514 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124453 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124392 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124331 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //