Array 1 601676-601281 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIH01000001.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 601675 29 100.0 32 ............................. GGCCGGCATGATTTTAACGGCAAACTGCCGCC 601614 29 96.6 32 ............................T ACACGTACCGGGTTCACCGGTGTCCGTGCTTG 601553 29 100.0 32 ............................. TGGCACGGCCTAAGCGTTGATGGTAGCCACGA 601492 29 100.0 32 ............................. AGCAATTCCCATATCAGGATTACCATCAAAAA 601431 29 93.1 32 ............T...............T TGGGCGATGCTTGATTGTGTTATTAAGCATGA 601370 29 93.1 32 ............T.C.............. GAACAGAAATTTTTGCCAATAGATTCACACTA 601309 29 93.1 0 A......T..................... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTATTCCCCACGCATGTAGGGATGATCCC # Left flank : ACCCACATGAATTAAATATTGTGGCTACGTTTAACTTAATCAATAGTCCGGCTATGATGATTGAGCGTGGCATGGGCTATGCGTTTACATTCAGTCATTTAATTAATACGACCGGCAACCCTAATCTTTGTTTTCGACCATTGATGCCAAAGGTGGAAACCAGCCTTTATTTGGTATGGAAAAAGTATCAAGTTATGACACCGGCCAACAATCTTTTTTTGAAGCAATTACGTCATCAATTGACTTTCTAAAATAATATAACAATCTTAATTGCTTATAGGTAGTAGAGGATAGGTACGGAAAAGTGGGGACTTGCAAAATGCGACCCACAGAATTGATAGTTGGACAACCGGTAAAAATTTATTTGACGGATCTAGGTAATAGATAAAGCTGCATAGGTATCTTATACTAGATACATTAGGACGATTGTTTGGATGCAAAGTGATGTAATTTCGACTTTTTTGAAAAATAGAATGCTGGTATAACGGCGTTTGTTTAGT # Right flank : ATTTTAAGAAGCCCTAACTACTATGCTGCCACGCCACACACGTATGGGTTGAATTAAAGATAAAACAGCATGTTTAAAATTAAGTCTTGAGGACTAAGAAATAAGCACAACAGTTCTGAAAACATCAATTATAAATTAAAAAATAGTGATTTCTTCATCAGTAAGAAGAAGTCACTATTTTTGCTGCCTAATTACAATTTAGCTAGTTTATATTTTATAATCCCGGTTCAATCAACTGCCAAGTTCGTTCAAATCGATCTTGATAATCATCATCTAGCCAAGTTTCTTTAAATGTCGGTAACATAAAAATGGCAAATGCGGCGATAACGGCTTCGGCGCGTTCATAATGTGCGTCGTGATAAGCCAATAAAATATCGACATTTTGATAGGCTGGTTGTAAAACCCGTCGCAAGGCAGCCGGATTATTATCGAGATACTGGGTATTGAGCGCAAACATTTGGGGATTATTTTGGTAAGTACGTTTTTTGGCATTTACTAAC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTAGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 617751-617600 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIH01000001.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 617750 29 100.0 32 ............................. ATGGGTCAATGTCAATGTCGCTGGGGTTATAC 617689 29 100.0 32 ............................. GAAGAACAGATCAAACTAAGCGAGCTACTTGA 617628 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTATTCCCCACGCATGTAGGGATGATCCT # Left flank : TTTCAACTCGGCTTTGTCCAGGCTTTGCTCGGAGTTGGTTACACGTTGACCTTAAATATCCACAAATTGCCACAAATTAATTGGTTAGCTGCAGCGGGGCCAGTAGTGTACTTAGGCGTTGTCGCGACGTTTGCGGCACAGGTGTTGCAGATGATCAGTCAACGCTATACGGATACGGTAACGGCGGGGCTTATTTTGATAACAGAATCACTGTTTGCCAGTTTGATTTCAGTCTTATTTCAAGTTGAAAGGCCAACATTGCATTTGGTCATTGGTGGCAGTTTAGTGATTTTGGCGACGGTTATTACGCAGTTTGATTTGCGTGGCGTTTTCGCGCGATATTTAGTCAAGGGGCACCGATTTAAAGTATAGATTGTACTGGAAAATATGGTATCCTAATTTTAGGGTGAATTGTTGAGCGTTGAACGAACCGAGTTCAAAGTGATGTAAATTGGACTTTTTCGAAAATTGAAATGCCGGTGTAGCGGCGTTTGTTTAGT # Right flank : ATAATTGAATACTTTCTTTCGTTATACATTAATAGCGTATATAAAAAAGACCGGAATTTCGGTCTTCTTTAGTATCTGTGATTTTCCAAGTAGCGTCTGTGCAAGATTTAAATACATACACTTAGTCCTTAATCGGGTAGTAGGCATATTGAGTTGTTTTTATTCATTATTGTAGCTGACTGTCGAGTTTCAACAAGTTATATATTTAATATACTATGCTAAAACTGTATCGTTGTCGGGATCATTGGTTACTAATTCATTAACATTGGTTATTAGTGTATCCAGCTCATCCAAGTCGTCGTCACATGTTCTACCTAAAAAGTCTGAGCCAAGATCCATACACTGTTTGTCAAAGCTTGTCATGGTTATAGTGTAAGTGGTCAGGCATATCTATTAAGACATCCCTAGGCCGGTTTACCATTTGAGTCAGCGGCTGTAAATTTAACAACCATGTTGTATGGAGCGTCACTGCTACGGTCTCTAATGACATGGGCTAAGTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTAGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //