Array 1 457340-455869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERJD010000001.1 Citrobacter sp. JGM124 scaffold1_size548971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 457339 28 100.0 32 ............................ CGTTAGTCTCTACTGTTCTCGGGTAGAATGCA 457279 28 100.0 32 ............................ TTTCTTATCAGCAGAAAGTGCGTCCCACGCAA 457219 28 100.0 32 ............................ CTGATGGAACAATGTTTGCTGGAGTCAATAAC 457159 28 100.0 32 ............................ GTACAGCAAAGACAGTCGTAAAAACACGATTG 457099 28 100.0 33 ............................ ATGACTCCAGGTGTAGTAGAACTATCAATTGAT 457038 28 100.0 32 ............................ CTTCGGTGTCATTTTCTGACGTTGGTTTTTTT 456978 28 100.0 32 ............................ ATTGTCGCGGCTTGCAATATCATCAATAGCTA 456918 28 100.0 32 ............................ ATCTACTCCGACTGCTGGAACGTTAACCACAG 456858 28 100.0 32 ............................ TCTTGGGTAATCCTTACCGCATGGTGAATACA 456798 28 100.0 33 ............................ AGAAAAATGGGCTGGGCGCATTCTATCCAAGAA 456737 28 100.0 32 ............................ GTTAGCATCAATCGCACTGCCAGCAGGAGCAA 456677 28 100.0 32 ............................ TTGATTGAATGGGTAGAAACCATCAGCAAAGC 456617 28 100.0 32 ............................ CATTGATGTCGATTTTTGCATCCGCTCGCAGC 456557 28 100.0 32 ............................ AGTTCAATATTACCACGTCGGCGGAATTGTAA 456497 28 100.0 32 ............................ TATGAGTCGGATTGGACTATCTGTGCAGATTA 456437 28 100.0 32 ............................ ATTACATGCTCAGGAGCTGATGAAGGAAGTTT 456377 28 100.0 32 ............................ ATTCTGAGTTCTAACAAAAGCAACAAGTTGGT 456317 28 100.0 32 ............................ ACCGGGGCGGGAATGCTTTCTCCTGATTCGAT 456257 28 100.0 32 ............................ ATTTCCCATCCCCGGCAACCATGTTCATATGA 456197 28 100.0 32 ............................ TGCTCAGTGACGGTCTGAGTGTTGACGGCCTA 456137 28 100.0 32 ............................ ATTCAAAACTATCTTCATTAATATCGGGCCGA 456077 28 100.0 33 ............................ TCAACCCATTGTTCGTATGATCCGTTGTCCCAC 456016 28 100.0 32 ............................ ACTGCATCATCTCGCGGCGCTTGTCCATGTAT 455956 28 96.4 32 ...........C................ ACAACAGAGAGAACACCGGTATTGAGATTCGC 455896 28 78.6 0 ...........C.TGT....A..G.... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTCACCGATGTCCCGGTTCCCAGCATCACAACACTGGTGTTAGCGATGGGAATATTCCAGTAGAGGGACTGATTCCCCTCCTCAGTGACATATTCCACCCGACCGCCATTCACCAGAATACGACAATACTGGAGGTAATAAATGTTCGCTCGTTTGGAATGCAATATTGTTTTTAAATCCGAAGGGCTAACAGGCTTATTCATAATTTATTTTCTGCCACCATAAGTCATCGTTGTCAGACCGAAGATAAAATCCCTGGCTAACTCTTTGATCAGAAAATACTAATGTCTTCAGAACGGGTACAGGTATAAGATTAACACAAATAATCTCTTACAAAACAGGTTGCAAAAAATACTCCCCGGCAGGAGACCCTTTTTTTCAGCCATCTTTAACGGCTTTAATAATCAATGGGTTACATCGATGCATTGAAAAAGGGTCTTGTCGGTGAAAACAGCAATTGCGACTAATAAAACAAATCGTTAGAGTGAAAAGGCTACA # Right flank : ACTTAACAACGCTGCCGGCATACTGGTTCAGGGGGGCGCTGAGATCACCCTCGCCTTATTATCAAATTAACTCATTGGCCGTTAACTTTTTGCAGCAGAATGCTGGATACTCCCCGCCACCGCCCGTCCGGTTAACGGCCCCGCATCAAAGGATTAATAAAACAGAATTTGATGCTGCCAATTATTTTTCCCGGTAAATGATACGACCCCATATTATTGTCTAAAAATATCGGGATACCGGGTTTTATTATGCATAAAAATTAAAGACGAAAGTCCTGTAATGATGTGACAACGGTCACAAGAAACATTCTATTGGCAATCATCGAATAGTTTGATCGTCTTAACATTAATGAAAATATGGTATGTCCTCCTGTGGAGAACTCTGTTAAATATGTTGCAGAAATATGGATATTAACAATGTTATTACTATGGATAAACATATGATGCTGGATTCAGCAACCTGTTTAAACAAGATGCAGGCACATGAGAGTAATGGATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 465984-466372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERJD010000001.1 Citrobacter sp. JGM124 scaffold1_size548971, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 465984 28 100.0 32 ............................ AGCTAATGTCAGGAATATATCAGCCACCGGAT 466044 28 100.0 32 ............................ ATATTAATCAGCTTCAGGAATGAAGATGATTG 466104 28 96.4 32 .................T.......... AGATTAGTTCCTGCCCATTTCTATCTTTTGGT 466164 28 96.4 32 .................T.......... CGCTTGAGTCAAAAGTAACAGCACTGGATAAA 466224 28 96.4 33 .................T.......... GCACAGCGTCATGCGATGCGGGTCTCGGCAAGT 466285 28 100.0 32 ............................ GCATCAAAAGACCGTGATACTTCGACCCAGAT 466345 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCACTGGCCGCGCTGGAACAAACCTGTTGGTTAAAAGGGCTACGGGATTACACCCTCATTTCCCCCTGTCAAAAAATTCCGCTCAAGGTGCAGTACCGCACAGTACGCCGTGTTCAGTACAAGAGTAGCGCTGAACGATTACGTCGCCGTTCCGTCGCGAAAGGCTGGCTGACTACTGAAGAGGCTGTAACCCGGATCCCAGACACCAGTGAGAAACGCAGCAAACTGCCATTTCTGCAAATTAAAAGCCTGTCGAATGGGCAGATGTTTTTTGTGTTTGTGGAACATGGCCCACTCCGTGATAGCGCTGTTGCGGGTCGCTTTTCTTCATATGGTCTGAGTTCTGAAGCCACGATCCCATGGTTCTAACCCTTTTTTTTTAGAGGTAATTTAATTCTTTGATTTTTAATATGAAATTAAAAGGTTCCCCAAAAGGGTTCTGGTCACGAAACAGCCAGATTTTCTTTGAAAATCTGGCTGTTATAGTAAAATATAAACA # Right flank : CGTTTTGATAACCGCATTTTGTGACACTGTAACTTTATATGCCATATAAGTCGTTCAGATATCTTCGTGCGATAATGGCTTGCACATTGCTGTGGCTAATCTCACTGGGGGCAGGTGAATGAGATTCAGAACCTCCCCACCGTTCAGTGGAGTTTGCAAAATATTCGCCGCATACCAAAAGATAGGTAACTTCATGTATTGGCCCGGTTTTTGCCGAGTGGTTCAAAGCGTTCGGTATGCTCGCTATACCTCTCACCGTCGCCAGACCCCTGGGGTAATTTAGTCGTGCAAGATGCGGGCCAGTTAATATCAAAGGGCTGCCAGCTAAAAAACCGATGAAATAGTGCGGTGGGTTTCAGCAGCAATAGGTAGAAAGCCTGTTGTACTTATCCAAATACGCATTTTTGACAGCATTGTTACGCGATGATTTGAGACGTTATGGAATAAAAAAACCACGCCATTGCGTGGTTTTTATCGTTTTTTATCGATTCTTATGAAGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //