Array 1 3297047-3298663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMLA01000001.1 Methylobacter tundripaludum 21/22 T451DRAFT_scf7180000000002_quiver_dupTrim_4432.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3297047 29 100.0 32 ............................. GTTTGCTGCAGGAGATAACGGCCCTTTAAATG 3297108 29 100.0 32 ............................. GTTTGTGAGATTTCTAGTGAATGTCCTCTTTT 3297169 29 100.0 32 ............................. GGCAGGGGTGTTGGACTGGTTTCTACATGCGA 3297230 29 100.0 32 ............................. CTGGAGCTTTGTTTCTGGGTCTATTTTTTGGA 3297291 29 100.0 32 ............................. ATATTCGACATGTTGCCCCACAAGACTTGCGT 3297352 29 100.0 32 ............................. GAACTAACATGACAGAAATTCTATACCCTGTT 3297413 29 100.0 32 ............................. TTTTGTACAAAACCATCAGATTAATGACTCTG 3297474 29 100.0 32 ............................. GACCAGGAAAAGCAAGGAACAATCGCGCAGCT 3297535 29 100.0 32 ............................. TGAATAAAAATAAATTAGCAGATGGAGTCGAT 3297596 29 100.0 32 ............................. TTATATGGCTGTGGCATAACCTACCGACCCGA 3297657 29 100.0 32 ............................. CAGTAAGCGGAGATGGGATTTTGATGCGCCCT 3297718 29 100.0 32 ............................. CCAAGACGGGCAGTGTGACTCAACAATTCCGT 3297779 29 100.0 32 ............................. TGGAGAACTATAGCAAGAGCGTCTAATCAGAC 3297840 29 100.0 32 ............................. CACATGCATAGTGGAAAATATTTTCCAGTGAT 3297901 29 100.0 32 ............................. CACCCGATACAGATGCTTTAAAAAATCCCCGT 3297962 29 100.0 32 ............................. TTGACGTTGAAAAGGCTGCTGGCGATATGAAC 3298023 29 100.0 32 ............................. TTCCAGGCACCGACATGGGGCATATTTGAGAC 3298084 29 100.0 32 ............................. CATAGGGAAAAATACGCGTCTAATCTTACCGT 3298145 29 100.0 32 ............................. GTCAAAACTCCCTAATGCACAAGTGAAAATGG 3298206 29 100.0 32 ............................. CAGACTTTAACAATCTCCAATTAAATTTAACA 3298267 29 100.0 32 ............................. GCCCCCCCCTATACTAACAGGGGGGGAAAGTC 3298328 29 100.0 32 ............................. TTGGATCAGTTGGTCGGTCGCGTTAGCCTTCT 3298389 29 100.0 32 ............................. GCCGCGCATACGACCATGTCACTATCTACGCT 3298450 29 100.0 32 ............................. CCTCCGAGGTATCAAATGAACAAACTGACCAA 3298511 29 100.0 32 ............................. CGCTGTTGCCGAGTCTCTACCGGGCCTTGCGT 3298572 29 100.0 32 ............................. GCATGTGAGAAATACGCGGAATTGCAGCAGAA 3298633 29 96.6 0 ............................A | AT [3298654] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : AGAGCAAAAGATTGGGCTGAATAAGGTTGCCGGATGAATGAGATAAAACTTCGCGAATATGAAAACTTTCATATTGTGTTATGGCTTTTGAAGGATACGTGTTGGTTGATGGAATGGAGGCTTGAAGGCATTTTCATGATCGTGCCGACGATTGCGGCGGCTTTTCACATTACCTGGCTGGGACGAAAAAACACCGCAAACCTGTTTCATAATTTGGCGGTCAGTAGCTGGATATGCGGTAATGCGGTTTGGATGATTGGGGAGTTCTTTTTCAACGACAGCTTTAGGCCTTTTTCTAAAGTATTTTTCAGCATCGGCGTGGTGTTTCTTGCGGTGTATTATTTTGGGGTGTTGCCGAAAGAAAAACGCGCCCGGCGATGAAAAATGTCATGCTGAACTGCTTTGCGCTCTTTAACAAATTAATGACAAAAAGCGGCTGTTTTTTCGGTGGAAAAACCGGAGTGGTTATTTCGTTTTATTAACAACATGTTATGATTAGT # Right flank : AATTTCAGATTGTTTTAGAGTGTGTCCTGTCAGCGCATCCACTTCAGTTACCAAGTTGGCATGCCATGAATCTAACGGGTTCTTGCTGGATTAAAGCATCCCATTTCTTTTTGAGGTTTTTGGGTGCGGCGGATTAGCTGTATGGCTATTTTGTACTGTTTACGTTGAGAAAATGAAAAGCATCATCGCAATCTCCCCCCGTCCCTCAGCTATTTCTACAATATTTTTACTCGGGCTGTTTGTTCCCGGCATCAGCCACCAACAACCGGTTAACCTGTTCAAGATCATCTTGGCTGAGGCTGCTGGCCGCTTGTTTTAACTTGATGCTGTTGATCAGGTAATCATAACGGGTGCGTGCAAAATCCCGTTTTGCCTTGTACAGATTCCTTTGTTCGTTCAGCACATCGACCATGGTTCGGGTGCCTGCGCCAAAGCCTGCTTCGGTCGCTTCCAAGGCGCTGGTCGCGGATGTCACCGTGGCTTTTAGGGCGGTAACACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4025897-4028916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMLA01000001.1 Methylobacter tundripaludum 21/22 T451DRAFT_scf7180000000002_quiver_dupTrim_4432.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4025897 29 100.0 32 ............................. GCGGCAATTTAACGGAAATCGCCGCTTTTTTA 4025958 29 100.0 32 ............................. TTCAACGAACAATTCGGAAAACACCGCATATC 4026019 29 100.0 32 ............................. ACCTGGTCGTTATTAATGATCGCTGGATGCCT 4026080 29 100.0 33 ............................. TAGACAGATTACGCCTCATTTTCGAAGCTGAGC 4026142 29 100.0 32 ............................. TAATCCGCATGGGGACGGCGCATAAAGATAAG 4026203 29 100.0 32 ............................. GCAATACTCATAACCTTGGGGAATGTGTCCTG 4026264 29 100.0 32 ............................. CTGTCGTTGTGCTCATAACGCCTCATGGATAG 4026325 29 100.0 32 ............................. TCTGATTTTCCGGTGCATACACGATGAAACCG 4026386 29 100.0 32 ............................. TCTGATTTTCCGGTGCATACACGATGAAACCG 4026447 29 100.0 32 ............................. TCTGCCGCACTGAATGAAATATCAACACCAGA 4026508 29 100.0 32 ............................. TCGCCGGAGTTATGCGCGCATAATCCTCCGGA 4026569 29 100.0 32 ............................. CAACATTGTCTTTAGATCCAGGCGGCTACAAC 4026630 29 100.0 32 ............................. CCGGCGGAACCGCTGAGGGCATGGCGGGATCG 4026691 29 100.0 32 ............................. CTCAAATTCAGCGACACACAACGCCACGCTAA 4026752 29 100.0 32 ............................. GATGGTGTTGAAACCGGCGGCATGATTCCCGG 4026813 29 100.0 32 ............................. GATGATTATGTCGATGCGGTATTTACCGGCAG 4026874 29 100.0 32 ............................. CCGGTGGTTTGCCAACCTACAATGCAGTTCTG 4026935 29 100.0 32 ............................. GATGGTGTTTTTGTTTTTTATAATCAAGCGGA 4026996 29 100.0 32 ............................. GCCCTAAACGACCAACGTTTTAGTGTGCCGCA 4027057 29 100.0 32 ............................. TCCCTTATTGCAGGACGTCAACATCGGCTGGT 4027118 29 100.0 32 ............................. GTTCCGTGGCCGTGGCTATATTCAACTTACGG 4027179 29 100.0 32 ............................. GAGCGCGGTCATGAGTAACATCCAATGCAAGC 4027240 29 100.0 32 ............................. TACGGCAACGGATTCAGTTACACATTATTGGA 4027301 29 100.0 32 ............................. CTGAGCTATTTCATCAGCGGATATTTGGTGGT 4027362 29 100.0 32 ............................. AAACCAACCAAAAATAAAACAGATCATCAGTC 4027423 29 100.0 32 ............................. CGTAATGAACGTGAGGCTAAAGCTATTGCCAA 4027484 29 100.0 32 ............................. CGTAATGAACGTGAGGCTAAAGCTATTGCCAA 4027545 29 100.0 32 ............................. CAAGGAACCAGAGAAGATTATTGACTGATCTC 4027606 29 100.0 32 ............................. ACCGATTAACCCCAGCCCAATTTTTTAGAGAT 4027667 29 100.0 32 ............................. AAAGGGGGGCTTCGGCTCCCTTTTTTTTTGGG 4027728 29 100.0 32 ............................. ACCATGATTATCATGATTCCCCAAACAACGAG 4027789 29 100.0 33 ............................. GTGGCCGAAGATCGGCACATGAAAGCGTTTAAT 4027851 29 96.6 32 .................A........... CCGATCAGGCTCACCGGAGGGCGATAATACTC 4027912 29 100.0 32 ............................. TGGCAATCCAACAATGGACAAAAAACATAATA 4027973 29 100.0 32 ............................. CATATGGGATAGAGATACGGCCTGCTACAACG 4028034 29 100.0 32 ............................. TAATGCCGTATAAAACACCGGAAATGGGCGAT 4028095 29 100.0 32 ............................. ACTGAATTATTATTGGCCGGACTAATCGATAC 4028156 29 100.0 32 ............................. AATAACCCGCTATTGCGCCGAAACCGTTTTAT 4028217 29 100.0 32 ............................. TCACAGTTTTGTTACAAAATGTCACACCTTTT 4028278 29 100.0 32 ............................. GCGGAAAGCAGCGCGGAGCTGGTTATTGTCCA 4028339 29 100.0 32 ............................. ATCCCCTATTCAAATTCGATGGTTACAGCGTT 4028400 29 100.0 32 ............................. CAATTGATGCCAAAGTCAACAGCGGATATTCA 4028461 29 100.0 33 ............................. GATTTTGGTGAATTCTTCGAGCGACATTTCTTG 4028523 29 96.6 32 T............................ TCCGTCTATTTTGCGCATAATCACCCCAGTGG 4028584 29 100.0 32 ............................. ACGGGGATGTTGCGGGTAGGATTGAATTTTTG 4028645 29 100.0 31 ............................. CGAGGGCGACCCGTACACAGCCTTTGCGCGA 4028705 29 100.0 32 ............................. GTTATCGACGGCGCTACTACGCTGCATGCGTT 4028766 29 100.0 32 ............................. CATTATGTGCCGTTTGACGGCCGGGTTGACCC 4028827 29 100.0 32 ............................. GGTTCGCAGAACTGGATACAGTACGACAACGG 4028888 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.8 32 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : AAAATCATTCCCACCATAGAAGAAGTGCTGGCCGCCGGTGAACTTGAACTGCCCCAACCTGCTGAAGAGAATATCGCTCCGGCCATTCCTAACCCTGAGAGTATCGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCACCGATTAAGAGGGCGATTAGCCGTTTGGCTGATCGAGATTCGGGCGGGTGTTTATGTCGGCGATTTATCGGCTAAAGTCAGGGAGATGATCTGGGCACAAATTGTAGACGGTATTGAAGAAGGCAATGCGATTATGACCTGGAGCACCAACACCGAATCGGGTTTTGATTTTGTTACTTTGGGGAAGAATCGTCGTCTGCCGGTCGAGTTTGACGGGCTCAAACTGGTTTCTTTTTATCCGCTTGAAGACCAAAAAGATAATGATGCTCTTTAACAATTTAATGGTAAAAAACGGCTGTTTTTTCGGTGGAAAAATCGGAGTGGTTATTTCGTTTGATTAACAATATGTTATGATCAGT # Right flank : GTCGTTCCAGGAAGAGTTCGAGCGCGATATGCATGTTCCCACACCCGTATAATGAATAAACTCCATTTCATCCGCATTGATCAGTCGAATCCGTGTCCTCCGCGTTCTATTTTTCATTGCCGAATAGTTACGGTAGTGCCGCGCGAAATCGGTTTTTTCATCGTCATACAGTCAATCTGATCACTACTTTGAGCAGTTTAAAGACGGCAAGGGAAATTTGGTTGTACCTTGTCCGCTTCATATCTTACAATCCCACCGGGTGTGCAGTAAGGTTACTGGGCGTGTAGGTTCCCCACACATTAATAATATTAAGAAATATTTTGGAGGATAGTATGTTTAAAATTCGTTCGCTGGTTACAGCGTTGGCGTTGGCAAGTTCGGTTTCGGTGGCTTCGGCTTGGGAGACTTTGCCCACAGAAGCACCGGCACCGGCCGATAATGCTACAACGCCTGCTAAGGTTGAGTTGGGTCAAATGCTCTATCACGACCCGCGCCTGTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4307564-4307952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMLA01000001.1 Methylobacter tundripaludum 21/22 T451DRAFT_scf7180000000002_quiver_dupTrim_4432.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 4307564 36 100.0 35 .................................... GCGTCAGCTATACCCAACGATTTACAGTCTATCAT 4307635 36 100.0 35 .................................... ATAAAATGGAGCCTTTGTCGTATACCCTCCATTCC 4307706 36 100.0 35 .................................... ATAAATACGCGCATCCGATGCAGCAACCATTCATC 4307777 36 100.0 35 .................................... CGAATGCGACATCTTGATTCGGCACTGGTGCGGCA 4307848 36 100.0 33 .................................... CTTTTGGGTATCTTCGATGTAGGCCGCATTAAG 4307917 36 94.4 0 .................C............A..... | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 99.1 35 GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : CGCGGCAAGCTGATGAGCCAACGGTTTCACGGTCATCTACTGACAGTCAGCATCGGGGTGTCCATGTATAGCGCCGACTATACCCATTACACCGACATGATCGAAGCCGCCGATCAAGCCATGTATCAAGCAAAAGAAGAAGGCAGGAACCGGATTGTCATGCTGCCCAATGTTGAAACCGGCAACAAATAACCTGATTAGCGAAAAACCTCGGTCGGCACCGCGATACCGGCATGACAGGCCGCTTATTATCCTAAAAACCGCCGTTCAAACTGTTGTTGCGGCGCGACATTGCAAAATCGGACGGTTTTTAATGTTCATTGTTAAATCAACAGCTTGCGAAAAAATCTAGTTAAAGTGCGCCGTATATTGATTTATAAAGGGAATTTTTGTTTTGTTAAGGTTTCAGGCCGTTTTTCAGGCTTGCCGCCGAGTTATTTACTAGGCGCGCCGCAAACAGCCGAAATTTCGCTTGCAAAGCAACAGCCTGCAAAGGTACA # Right flank : CATGCCAAACGAATACCAATCCGGCCGGGAAGCCAAGCCCTTTAGAGGGCGAAGCAAAGCGAATCCATAACCATCCTGCCCAGCCGCGCGCTCACCGCCATCCATGCCGGTTTGAAGCCGCCGAATCGGCTATCTGGCGACATTGCTTGTTGCTTTTAAAAAAAAGCGTTAGTATCCGCGCCAGCCTGTTAATTACCTGCCTTCTTGGTTCTCCGCAAAAACCTTTGTCTTGTTGGCGTCAATGTTTTTTTGCCACATGCACAGAACGTAAGCACATTAATACCGTTCACATTCAATCCTGTTAAGGTGTTTTTTGACTGCACATACCCGTTTAAACCCTGCCAATGCCGTTACCGAAAACCCGGCATTTCGCCTGGCCTGTTTTGAATTTCAACTTTGCCTAACCGAAGCCACCGAACTCCCAGTCTACAAGGGCTCCAGCTTTCACGGCGCATTCGGGCACGCGCTGGCTCGCATCGGCAGCCACTTCCGCGATTATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 4318688-4319006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMLA01000001.1 Methylobacter tundripaludum 21/22 T451DRAFT_scf7180000000002_quiver_dupTrim_4432.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 4318688 36 100.0 33 .................................... AAGTCTTTTTCAACGCTTTCGCATTGACTTTAG 4318757 36 100.0 36 .................................... ATAAAACCGAATGCTTGTAAAACACCAATAGACAAA 4318829 36 100.0 34 .................................... CTTTAAATTCCTTCCATTTTACTCTTTCACTTCG 4318899 36 100.0 34 .................................... GGATTGATTCCGGTGAACAAAAGACACAGCAGCG 4318969 36 86.1 0 ..............C...AA.........AA..... | A,T [4318986,4319004] ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 97.2 34 GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : GCACCTTAAACGATGCCTATTTCGACCGCAATCAGGCCGTGATGGCCTTAGCCAAGCTTGCCATGCAGCAAGGTTATAAAGCGGGCGTTCGCATTGATCCCAACGAACCGGATTGGCCTGTGTTGATGATAGATTTACCCAGCGGGCAGGTCGGCTGGCATTTGCCTAAAAACGAGTTGGTAGGGGCATGGCCTGAATATGAACGAGCCTGGGACGGGCATAACTTGAACGAAAAACGCCAACGCTTGGCGCGGTTTTTAGCCGATGAGCCTGAAGATTAGCGGCGCGTCGGGCGAAAATTTTGCGGTTTTTAGAGATCGTTGCGAAATCAACAGCTTGCGAAAAAATCGAGGTAAAGCGCGCCGTATGTTGATTTATATGGGGAATTTTTGTTTTGTTCAGGTAATTTAGCGTTTTTTAGGCTTGCCGCCGAGTTATTTACTAGGTGCGCCGCAAACAGCCGAAATTTCGCTTGCAAAGCAACAGCCTGCAAAGGTACA # Right flank : CGTTTGGGCGAATCCGCTTTCGCCCAAACGAACCACTTGCGTTTTAAGCACATCATTCCAGCCCAGAGCACGCCCTCATGCAAAAAACCCAATTGTCCGATGCCTTGACCGATTTCAATCTCCATCAGGCCTGGAGCAAGGTGTATGAAAACCAGGGCTGCGCCGGTGTCGATTACCAAACATTGGCGGCGTTCGCAGACCGCCTGCACAAAAACCTCGAGACCTTGCGCGATGAAGTCAATTACGAAACCTATCAACCCCAGCCGCTGCTGCGCATAGAGCTGGAAAAGCCGGGCGGCGGCACTCGCCCGCTGTCGATCCCGACGGTGCGCGACCGTATCCTGCAAACGGCGGTGACCCGCGTGATCGAACCTTTGTTCGAGGCCGAGTTTGAAGATTGCAGCTTTGCCTACCGCAAGGGCCGCAGCGTCGATCAGGCGCTAGACCGTATTCAGTTATTGCAACGCCAGGGCTATCACTGGGTGGTGGATGCCGACATC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 4321952-4322272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMLA01000001.1 Methylobacter tundripaludum 21/22 T451DRAFT_scf7180000000002_quiver_dupTrim_4432.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 4321952 36 100.0 36 .................................... AGTATTTTCTTTATGTTTTTATACTACCTTACTCTT 4322024 36 100.0 36 .................................... TCCTCCCTTGCTTTCGCTTCGGAAGGGAATATTTCC 4322096 36 100.0 34 .................................... TTACATATTTCTCGGAGAAAGGCAGCAGAATCGC 4322166 36 94.4 34 ...............T.C.................. ATGTGCTAACCGATTGGCGTAAAACCGTCCTTGT 4322236 36 80.6 0 ....T.................GT..AA..C...G. | T [4322240] ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 95.0 35 GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : TCTGTTTTGATGTGCATGACGCCAAACGCTTGCGTAAAGTCTCCAACGAGATGGAAAACTTCGGCGTCCGCGTGCAGCGCAGCGTGTTTGAATGCCATCTTGAAAGCGCGCAGTTGCAGGAGCTTAAACGGCGGCTGGGCGATTTAATGGACGCGGCGGAAGACCAGGTGCGTTATTACAACTTATGCGGCAAAGACAAGCAGCATATCGTCATTGATGGCGCGGGGCGGGTCAGCGCCGATCCCGATTATAATCTGCTCTGAGGCTTGAAAAGCGGTTTGCGGCACGTCGCTGCAAAATCGGACGGTTTTTAGGGTTTGCTGTTAAATCAACAGTTTGCGAAATAATCGAGGAAAATCGCGCCGTATGTTGATTGATAAAGGGAATTTTTGTTTTGTTCAGGTAAATTAGCGGTTTTCAGGAGAATTGATGAAAATCCCGCGCACCGCGCCGCAAACAGCCCAAATTCCGCTTGCAAAGCAACAGCCTGCAAGGGTACA # Right flank : CGCAAAAAAAACGCCCGGTTAAGGGCGTTTTTTTCATTGCCAAACTTTAGAAGTTTTTCAAAACTCGGTGCTATTCATTTCGACGCTCACCGTTTCAGGTTGATGACGATCCCCGCACCATCTAACGATTTTCGCTTATCCACTTCCGGTTCTTGCGACATCAACACCTGACTATCCAAATATAAAGGCCGCAGCTTTTTTTCCTTTTCCGAAGCAAATATATTTAATGATTCTCCCTGAACGGCCTTGTTTTGTTCAATCGTCAGCCAGGCATTTTCAGAATCCTTAAATGGCATGGAAAGATCCAGCGGCTTTTGAAATTCAGCCTCTTCAGCCGCACTGTTTTTGGCGCGCAGCACTGAAACCGCTTCCTGCTTATTTTTTGTTTTTTTCTGTTTTGGCTTAACGAGGCTTTCTTTGCTCTTGGACTGCACTTTTTTTACTTCATTTGCTGAAGCACGAGCATTATTAACGCCGGGCTTTTCAAACCCGGTCAGCAA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //