Array 1 67036-65176 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVY01000019.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5720 NODE_19_length_73498_cov_52.657835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67035 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 66974 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 66913 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 66852 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 66791 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 66730 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 66669 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 66608 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 66547 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 66486 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 66425 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 66364 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 66303 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 66242 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 66181 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 66120 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 66059 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 65998 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 65937 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 65876 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 65815 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 65754 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 65693 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 65632 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 65571 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 65510 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 65449 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 65388 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 65327 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 65266 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 65205 29 96.6 0 ............T................ | A [65178] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12075-10095 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVY01000069.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5720 NODE_69_length_17578_cov_54.906252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12074 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 12013 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 11952 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 11891 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 11830 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 11769 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 11708 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 11647 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 11586 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 11525 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 11464 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 11403 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 11342 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 11281 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 11220 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 11159 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 11098 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 11037 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 10976 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 10915 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 10854 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 10793 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 10732 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 10671 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 10610 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 10549 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 10488 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 10427 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 10366 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 10305 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 10244 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 10183 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 10122 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //