Array 1 2145323-2145993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040817.1 Dickeya zeae strain PL65 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 2145323 37 100.0 34 ..................................... GAAATCTGACCCAGCGGCCCGCCAGTCCATTTAC 2145394 37 100.0 34 ..................................... TTTAGACATATTTTAATTTCCTTTGATTTTATTA 2145465 37 100.0 33 ..................................... AAAACGAGAGTCGGCGCGCCGTTTACATCTCGG 2145535 37 100.0 34 ..................................... TCGGTACTCCCATCGTGACCATCTACCAATTTTT 2145606 37 100.0 33 ..................................... AAAGGATTGGGTATCCAAGAAAGCAGATTCAGC 2145676 37 100.0 33 ..................................... CGAATGAGTAGGGGATTTGTATTTGACGCATTG 2145746 37 100.0 34 ..................................... ACATTGGTAACAGCACCGCCATTATTATGCATAT 2145817 37 91.9 34 ....T..C....C........................ GTTAAAAGAATAGTATTTTGTTCCAGAATTTTTT 2145888 37 100.0 32 ..................................... GAAATTGACGAATGTTCATAGTGCCCACTCGA 2145957 37 89.2 0 ................................TTCT. | ========== ====== ====== ====== ===================================== ================================== ================== 10 37 98.1 34 GTCCGTAAGGACGTTCCCTGACTGAAGGGATTAAGAC # Left flank : GGCTGCGAAAAATGCAGCGACGCTGCGCGTCACAAGGCTGGGCATTGCAAAAGTCGCTTTTTTTATTTGCGCTTACCGTACCAGAACGCCAGGCCCTATGCCGTGAATTACAACGTCTGATTAACCCAGAGGAAGACCGTCTGCTTTGCCTGCCGTTTGACACCCCACCCGGCAGTTTTCACCTTGGCCCTCGATCGGACTACTTACTCATTCACTCCGACCCGCGCCTGAATGATTTTGTGTTTTAAGCACACAACCGGCACGCAACTTGCTTATTTTCCCCGCTGCGCCCGACATCGACTGGCGATCCGCTTTTCCGTACAAAAAACCAGCAAAAATAAAATAACGCTCACCACAATTCACGCCACATCAAGCCATTAGCGCCACGGCGTTTGTAGTGGCACTACTTTTGCTTAAAAACGTGTTTTTTGCGGCGGAAAAAACAGAAAAAAACGCGTTTGCTTGCTCAAATAAAAACAATGAGTTATACATTTTCATTA # Right flank : CTCCACCGGGCGGTTTTCCGCCCATTCTCAAATTTCCTTTATCCGTTGGTAGGCATTCCGGCTGAAATTTCGTATGGTTAAGCCCGTTACGGGCGGGCAACGTGGCGCGCCCCGTTTTGGCACAAGGAGATGTCAATGAACTGGCTTGCCGCCTCTTGCCATGTGGCTGCCTTTGCGCTGTTACATAACCTGAAACCGCTGGCGCAGCGTGCCGGCATTCAGGATTTCCCGTCACCGGCACTGGCAAACAAACTGTTTGCGCCGCTGCCGGAAAGCCTCTCAAACCGTGCGGATCTGCACGAAAATACATTAACCCCGCTATTGGATTTCGCCGCCAGACTGGCGCGCGGCGTGCCGGATACGCCCGTAAGCCGTGGCGAAACCGGGCTGATACCGCTCACCCACCTGTTAGCGGACGATAACCACAGCGCCCCGGCAGCACCAAGTTACAGCCCGCTGGCCCCGCTGGGAGTCGATTCGCTGATGCCGGTGACGGCAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTAAGGACGTTCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 2154626-2154944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040817.1 Dickeya zeae strain PL65 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 2154626 37 100.0 33 ..................................... CAATCCAGCTGCTTTGCTTCTAAATGAAGCTAA 2154696 37 100.0 33 ..................................... AGATGGACCGTAACGGTAACCTGCTGGTATGGC 2154766 37 100.0 34 ..................................... ATCGCCACGGTGAATCCCACCACGCTCACTTTAT 2154837 37 100.0 34 ..................................... TAGAGGGCTCTTGAGCGGCGGTGTTGACGTTGTT 2154908 37 86.5 0 .......T......A................A..A.A | ========== ====== ====== ====== ===================================== ================================== ================== 5 37 97.3 34 GTCCTTACGGACTTGCCCTGACTGAAGGGATTAAGAC # Left flank : TCTAAAAAATAGCTCTCATTGACATCTCCTTTGACACCGTCATGGGTAATAGCTGACTTTGACTGTGACAATTGAGTTTTCAGCACTTCCTGTTGCAATTTAAATGCATTTTTCAAATATTTCTTACCATTTTTTTTAGATAACGCTTTTGCCTGATTCGTCATATTCCTTTCCTGATTTTAATTTTATGAATATCTACCCGACGGGAAAGTATATCGCTTATCCATAAATTTTCCTGTGATATTAGGTGTCCATTCAGGCACAGATTTTGCTTATTTTCCCCACTGCGCCCGACATCGACCGGCGGGCCGTTTTTTGGTACAAAAAACCGGCAAAAATAAAATCATGCCGATAACAACTCGCTCAACATCAAGCCGTTAGCGCCACAACGCATGTACTGGCACCGCTTTTGCTTAAAAACGTGTTTTTTGCGGCGGGAAAAACAGAAAAAAGCGCACAGCCTTGATCAAATAAAAACAATGGGTTATAAATTTTCATTA # Right flank : AACCCCTCAACTTTGAGGGGTTTTTCCATGGTGTTTTTATGCTTAGTCAATTTATGCCGCTATCTTGGGTCTCAATGGAATCGGCATCACCTCTCCCCCTCCTTCTCTCCCTTCAGCTCTGACCACATCAAACTGCACCCTCACCCACTCGATGGCGTCGGCCACCACCTCGTGGTAGTCGTAACTGGGTATGCTATCCAGGTTGTCAACGTCGACATCGGCCAGGAACGACTCCATCTCGATACCGTTATTGTAAAATACCGTTGCCTGTACACAGGCCGGTGTAACGATACCTTCCGCCACCTTATCGATATACTGCACAAGATAGTCGGGGTCGAACTCGCATATATCTATCTCCGATAATTTCTGCGGTCGGCACGTCACATCAATGTGACCGATCGAGAGCTGAAACCGCCGGATACGTCGTTCGTCAAAATTGCAGCGGTGAAAGAACCGGTTGAGCTGGTGATAACAATGCCTGCTGATGTCCGCCAGTTTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTTACGGACTTGCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 2443258-2442007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040817.1 Dickeya zeae strain PL65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2443257 29 100.0 32 ............................. ATCACGTGCGCGCTGGATAATGACCGACGGAG 2443196 29 100.0 32 ............................. TTCCCCGCCTCGGCGGGGTTTTGTTGGGATTA 2443135 29 100.0 32 ............................. TGAGCCATGCCCGCATCAACATCCGCCAAAAC 2443074 29 100.0 32 ............................. GCAACAGATGTGTCCAGCCATTAGCTTCACAT 2443013 29 100.0 32 ............................. CCAGGTGATGAGTGCCTGATTGTTTTTGCTGA 2442952 29 100.0 32 ............................. CTCTTCTGCAGGGCTGGGAGGAGGCGGAGGAA 2442891 29 100.0 33 ............................. TTTTCAGTCTTCAGGCAATCTTTTCGGTACGCA 2442829 29 100.0 32 ............................. TACTGGGTTACCCGCTGGCTGCGAGTGGGGTT 2442768 29 100.0 32 ............................. TGATCTCGCCACTGCTCAAGCCAATTTTGAAC 2442707 29 100.0 33 ............................. AGCCCCGCATATGCATTCATGTTTCCGCTGCGC 2442645 29 100.0 32 ............................. ACCAGTGCAGCGGGACGCTGACAGGCTGTAAA 2442584 29 100.0 32 ............................. CGTCGCGCGGTTTTCTTGATCTGCTATTAGCT 2442523 29 100.0 32 ............................. CCGTGGGAATCACGCAGCCAGCGATCCAGAAA 2442462 29 100.0 32 ............................. TTGTCTCCTTGCATCGTGGCGATAGACAGCTC 2442401 29 100.0 32 ............................. GTTATATAAACGTTGGCAGACTTCTCCCAGGC 2442340 29 100.0 32 ............................. CACATCATGAGCAACACCAGCGCGTTGTCATT 2442279 29 100.0 32 ............................. CGTGATGATGCTTTTTTCACTTTCGTTCATGT 2442218 29 100.0 32 ............................. AGTGGACGATGCTGTGATTTGTGCCCGAAATC 2442157 29 100.0 32 ............................. GTGATGCTGGTCACCGACCCACGCACGCAGGA 2442096 29 96.6 32 ........T.................... GGTCTTAATACGCTGTGGGTTAACGCACAGCG 2442035 29 89.7 0 .........................G.GT | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGTTTTATGCGGTATTCCCACTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCCTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTAGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGAAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTCGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TAACGTAATAGCGTGGCACAATCCGTCACGATGTATTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTTTAATTTCTTTTTTATGTGAATAAAACCACAAAAAGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCCGCTATTTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGGAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGAGGTGGACGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2698470-2697465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040817.1 Dickeya zeae strain PL65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2698469 29 100.0 32 ............................. ATCCGATTGTAGCCGCGTCGGTTGTCGCGTAA 2698408 29 100.0 32 ............................. CGAATGCCGTCTTGACTGATATTCATACGTCA 2698347 29 100.0 32 ............................. TATCTTTAAGATACTCACAAATCTCCCCGAAA 2698286 29 100.0 32 ............................. CCGGTACCAACTGTCGGAAACCCTTCGGTATC 2698225 29 100.0 32 ............................. TCGTCCGCATTTCGTCCGCATTGAATGCGGAC 2698164 29 100.0 32 ............................. ATCGGTAGGCACCATCGAATACGAGGACTGCA 2698103 29 100.0 32 ............................. AGCAAAAGTACTGGCTCCAGCCGATTTTGGAG 2698042 29 100.0 32 ............................. TGTGTCGTCATGTGGAAACGAATCACGGAACG 2697981 29 100.0 32 ............................. GCCACCGATGTTATTTATGGTGACAGCTCCGT 2697920 29 96.6 32 A............................ GCTCCAACTATGCCTGAGGGGCAAAGAACGGA 2697859 29 100.0 32 ............................. TGATTGCAGACCAACGACGTTGGGGGGAATAA 2697798 29 100.0 32 ............................. TGGTTAGCCTGGCTGGATCATATGGGCGGCAG 2697737 29 96.6 32 .....................G....... GTCAGACGATCTATTGTGTGGTCTGATTCAAT 2697676 29 100.0 32 ............................. AACGAGCGCAGCGCGCCACGCTCAACATCAAA 2697615 29 96.6 32 .....................G....... TGCGTCCGGTGCCACCCACTTGGGGTTAGGAT 2697554 29 100.0 32 ............................. CAGAAGAGCTGGAAGAGCGGCGTCTGCATCAC 2697493 29 79.3 0 ........T........A.....G.TG.A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGTGAGATTGATCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCGGAGCCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTGCTGGAGGTGCGCGCCGGGGTTTACGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAGCTGGCCGAGCAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGGCGGATGCCGGTGGACCTCGATGGTTTGCGGTTGGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GAAATAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTGGGTGACCATCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGCGGGTTTTTTGAGTGCCAAAGTCTTCGCTGCCGGTGCTGATGAAGGTGACATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGAGATTGCGTGGCATTGTAGCCTTCTCTGACCAGCGAAGAATTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATGCCCAGTGACTGCTCCTGACTGGCAACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGTCGGTTCCCGGCGTCCACCGTCTCGACTGAATGGCCGATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4039078-4036347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040817.1 Dickeya zeae strain PL65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4039077 28 100.0 32 ............................ AGAGATAAAAGCCTTTCTCGATATTAATCATG 4039017 28 100.0 32 ............................ GGTCACAAAATCGGTGTATGTGACCTCTTCAC 4038957 28 100.0 32 ............................ CAAAAAAACATCCAGTGCATTTATCATAATCG 4038897 28 100.0 32 ............................ ATCAACTGAGTGACCTGGGTTGCGCCAAGTCC 4038837 28 100.0 32 ............................ TACGACAGCGCCAACCCCGGCAGCGACACCAG 4038777 28 100.0 32 ............................ AGCCGTTCCCGATAACGGTCACGCTAAAGTTG 4038717 28 100.0 32 ............................ TTTACAGGCGTGCATTCAGTTTTCATTATCTT 4038657 28 100.0 32 ............................ CACAAATGCTGCGCAACAAGCTGAACCCAGAC 4038597 28 100.0 32 ............................ TGTATCGGCTCCAGTAGCGGGACACCTTTGTC 4038537 28 100.0 32 ............................ GCCACGTCCTGGCTGCCTGGCTGTATTCAAGC 4038477 28 100.0 32 ............................ GGCGACGATACGCATCGCTGACTCATAAATCC 4038417 28 100.0 32 ............................ ATGATTATTCGTTGGTACTGGATTTTTTTGCT 4038357 28 100.0 32 ............................ CGCACGTTTGAACTTCAGCGTGACTGGCCCAC 4038297 28 100.0 32 ............................ ATAATGAATGCGTCGGCGATGTTGGGAGACGG 4038237 28 100.0 32 ............................ TGCACGCTGGGAAGGCCGGGACGGTAACCATC 4038177 28 100.0 32 ............................ TCGCGGAACCGTGCTGCCATTCCTGCGCCTGA 4038117 28 100.0 32 ............................ AGCGGACCCGGATTCATTTCGGGGGATTGGAT 4038057 28 100.0 32 ............................ ATAATCATCCGGGCGACTCTGGCGGCACAACA 4037997 28 100.0 32 ............................ TGTCACCACGCTGTACGGCCGACTCCAGCGCT 4037937 28 100.0 32 ............................ AGTTTTCCCGCAGACTGCGGCAGGTCGATAAC 4037877 28 100.0 32 ............................ GAACAGGTTGGCATCGCACAGGTCGGCACCGA 4037817 28 100.0 32 ............................ ATTACCGAATGCATCATTTACATCGCCGTTTA 4037757 28 100.0 32 ............................ ACAAGCCGAAACCGATATTCCCGGTTCCGCCA 4037697 28 100.0 32 ............................ TCCGTACCTGTAACTTTAGTTTGGAATTTAAA 4037637 28 100.0 32 ............................ GAGAATCGCCCGAACCATTTCCGCATTGAAAA 4037577 28 92.9 32 ...........GA............... ATGCGCACAGCATGTTCCCCGGACGGCTTGTG 4037517 28 92.9 32 ...........GA............... TGCTGACACCTCCGGGATTGGGCTAATCGCTA 4037457 28 92.9 32 ...........GA............... TGAATAACACGTTTACGCAGCCTGATTCGGTG 4037397 28 92.9 33 ...........GA............... CTCCTCCACAAAACGTGATACGAGCATTAGACA 4037336 28 100.0 32 ............................ GGAGGGGCTTCACGAGGTAACAACAATAACAT 4037276 28 100.0 32 ............................ GTAGTCGGCCCCGCCTGAGCCACCATAATTCG 4037216 28 100.0 32 ............................ GTCTCACGCCGAAAAGTTACCACAATATGTGG 4037156 28 100.0 32 ............................ CGAACCAGTCCGTTCCCTCAGTCACATTCAAA 4037096 28 100.0 32 ............................ CGCGCCGATGCCACTGATAACGTCAACGGTGG 4037036 28 100.0 32 ............................ ATCAGGCGCTGGCAGATGCGCTGCTGGACGCA 4036976 28 100.0 32 ............................ TTGCAAAACTCTCAGATTGGCTGGATGAAATT 4036916 28 100.0 32 ............................ AAAATAGCTGTCTGGATGTTTCAATAGCGCTA 4036856 28 100.0 32 ............................ GAAATGGAGGATGGCTCTGAGGTTTCATGGGC 4036796 28 92.9 33 ...........GA............... AAATAACGCCGATATCAGTGTCATCGCTACACC 4036735 28 92.9 32 ...........GA............... TTTTTGCTCCAGAACGGGGAGTAACTGCCGGT 4036675 28 92.9 32 ...........GA............... GGTAGCGTCACTGATGCCGATGACCTGTAATT 4036615 28 100.0 32 ............................ ACTCAGAACTAACGGAAAATATAAGATTATGC 4036555 28 92.9 32 ...........GA............... CGCGAAGAATTAGACACGATACGCGCCACATA 4036495 28 100.0 32 ............................ GTGCTCGAAGATACGGCTATCACGTCTGTATT 4036435 28 89.3 32 ...........GA..............G AATGATGAAACGGACTCACCACCCGCATAAAC 4036375 28 75.0 0 ...........CAC.......G.T..CG | G [4036353] ========== ====== ====== ====== ============================ ================================= ================== 46 28 98.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGTTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGTAATAACACGCAGGCTAATAATTAATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCGGGAAAGTGAATGACGCCGAAAAGACTTTCCTAATTTTCATACCCTTTTTTTCAGCCGCTATTTTCGATATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGAGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACATGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGTACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCCACCACACTACCCTATACACTACGCCCTTAATCCAACAAGCGCTTTCCCCGCTTCAGGGATATTTTGTCAAAACGACGCCCAATCACTATTGCTGCTACCCGCCGCCGCCGTGGCCCGTTTTTCCGGCAACGCCGGAGATAGCACCGCTGGCTGACGGGCTGGCGGCATTGTGCCGCTGTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 4048055-4049408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040817.1 Dickeya zeae strain PL65 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4048055 28 100.0 32 ............................ GATCACAAGGCTGATGGAAAAGGGCGGTGGAT 4048115 28 100.0 33 ............................ GAACTCCGCCACGGTGAATGCGGGAACATCGAA 4048176 28 100.0 32 ............................ GAGAATGGTACATGTGAAAGATCTGGCTGATT 4048236 28 100.0 33 ............................ GAACATGAAAAATCGATTGAGTGGAAAAATGAA 4048297 28 100.0 32 ............................ GACTCTGCTGGATTATGACGGCGATGCGGTTA 4048357 28 100.0 32 ............................ GTTGCCGAAGCGCTGGCAACAGCAAACAACAA 4048417 28 100.0 32 ............................ ATAGCCTAAATCTTGCCCGAGCATCATCATCA 4048477 28 100.0 32 ............................ ATCTGCTCAGCACGAGCCTGGGCGACGATGCC 4048537 28 100.0 32 ............................ ATGATTTCGCGCCTCGCGGTGTCTGGAAAACT 4048597 28 100.0 32 ............................ TCAATCGGGTGACCCGGCAGTCGGAATCCCCT 4048657 28 100.0 33 ............................ CTCGCCCACAGCATCGACACCGGCGAGCGCTAC 4048718 28 89.3 32 ...........CAC.............. TGTATGCCACAAATAGCGGCATGACATGCGAT 4048778 28 92.9 32 ...........CA............... TGGAGCGCGTCGCTGATGGGCGAATCACGCTC 4048838 28 92.9 32 .......T...T................ CGTGTCGCAGACGAAACACGATACCTATGCAG 4048898 28 100.0 32 ............................ GCACGCTGAAACTCAGACACCAGGGCGCGCGA 4048958 28 96.4 32 ...........T................ GAGAGTAGACAACCAGGAGGAACACCAACAAC 4049018 28 85.7 33 .....T.....CAC.............. TACTGTACCGGCTATCAGGTCACCATCGGGGGG 4049079 28 85.7 32 .GG........CA............... CTACTCGTCGCGATTCGAAACTCAGTGAAATC 4049139 28 92.9 32 ...........CA............... CGTAGCGGGATTAACATCGTAGGGGACAGCAT 4049199 28 92.9 32 ...........CA............... TTGCCGGCGAAGTGGCCCAGCTAACGTGAAGG 4049259 28 92.9 33 ...........CA............... GTTGGCGTCCGTGCCGCCAATAACCAGCTGATC 4049320 28 96.4 32 ...........T................ ATCTGTTCTTCATAGCGCCCGGCGTTGTATGC 4049380 27 78.6 0 ...........CAC.........-..CG | GG [4049401] ========== ====== ====== ====== ============================ ================================= ================== 23 28 95.5 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACTGGCTGGCGCACAGGGCTACGCGACTATAGCACCATCACTGAGGCACTACCGGTGCCAACTGGTGCGCAGTACCGCACTGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGCCGAATGACTGAGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAGAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTATTGTTTGTCGAGCACGGCCCGCTACAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGCTCTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTTTTCGGAAAAATGGCGATTTCTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : GGGGTTACTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAGCGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAGCACCTCGGCTGTTGCCAACAGCCCATCCCCGGCGGGCATGGCCGTTTCTTGCAAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 4055466-4054476 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040817.1 Dickeya zeae strain PL65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4055465 28 100.0 32 ............................ TTATTTGTAGACATTTCAATAAGATATATCGA 4055405 28 100.0 32 ............................ TCTATCGGCAACATCAGGCTACCGTGGAGTAA 4055345 28 100.0 32 ............................ AGTTCGAAGGTTGATTTGAAGTTGTACAGACC 4055285 28 100.0 32 ............................ TAAATAAAAAAAACCCGCGCATCAAGCAGGAT 4055225 28 100.0 32 ............................ ACCGAGCTGAAGGAGAGGGCGGTAAAGTCTGG 4055165 28 100.0 32 ............................ TGGAAATAATGTCCGCGATATCGACCAGGAAC 4055105 28 100.0 32 ............................ TATTGCGGAGATACGAAGATGTTTAAGAAAGG 4055045 28 100.0 32 ............................ TCACCCTTAATGACGCGGTTAAGTACGGTTTC 4054985 28 100.0 32 ............................ ACGAATTCAGCGCACATACATCACCGTGGTTA 4054925 28 100.0 32 ............................ AATCAGCACTCTGCATCTGGCTCTAAAACGCC 4054865 28 100.0 32 ............................ GGATAGCACCAGCGAATCACCGGGATGAGAAT 4054805 28 100.0 32 ............................ AATGCTAAAACGGACTCACCACCCACACAAGC 4054745 28 96.4 32 ............A............... GGAGCCGTGCAGTGCGGCAATGCAGGCGTCGC 4054685 28 100.0 32 ............................ AGAGGCCAGGTCATTAGCCAGATTTGCGCGGT 4054625 28 100.0 32 ............................ TCGTGCAACATACTTCCTGCCTATTGATTAAT 4054565 28 82.1 32 ..GA.......CA.C............. AGCGAATCAGTGATGCCAAATTCAGTAAACGT 4054505 28 75.0 0 ..GA........A..........G.TGG | GG [4054480] ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.3 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGAAATCCCACCCATGGCGATATCGCACTGGTCGGATTGAAAATCTGGCATCAGGGTTTTCCAACTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAAACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAAAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGTTTTTAAAAAAGGGTTTCACGACCAAAAATGTGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACT # Right flank : GTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACCACTCCCGCATACATTCGACAAACACATTCGCCAGCAGCACCCCGGCTGTTTACCAACAGCCCGAAAACGTTACTCCGCCGTCAACACCGCTACCGCCTTTTTACGCTGTTTAATGGCGTAACCCGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAAAATCCCGGCCAGAAACAGTAGGCACAGAATGTTGGTCAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //