Array 1 281391-282131 **** Predicted by CRISPRDetect 2.4 *** >NZ_QADR01000001.1 Listeria monocytogenes strain LM-F-131 LM-F-131_scaffolds_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 281391 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 281456 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 281521 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 281585 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 281651 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 281715 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 281778 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 281842 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 281907 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 281971 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 282037 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [282060] 282103 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7497-5347 **** Predicted by CRISPRDetect 2.4 *** >NZ_QADR01000003.1 Listeria monocytogenes strain LM-F-131 LM-F-131_scaffolds_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7496 36 100.0 30 .................................... TAAAACAATGGTGCGCTTTTCAACTGGTTT 7430 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 7364 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 7298 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 7232 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 7166 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 7099 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 7033 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 6967 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 6901 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 6835 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 6769 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 6703 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 6637 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 6571 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 6505 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 6439 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 6373 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 6307 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 6241 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 6175 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 6109 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 6043 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 5976 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 5910 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 5844 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 5778 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 5712 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 5646 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 5580 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 5514 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 5448 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 5382 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //