Array 1 635802-637814 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822035.1 Streptococcus thermophilus isolate STH_CIRM_1051 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 635802 36 100.0 30 .................................... GATAGCAATAGCTTTCTTGACCTAAAAGAC 635868 36 100.0 30 .................................... GAGGTCTGTAATTTCATTCCCTCGTAATCT 635934 36 100.0 29 .................................... AAAGGTTTCTCTAAACACATGCGGAATAT 635999 36 100.0 30 .................................... GTCATAGTACCAAGCACAAATAACGTTAGT 636065 36 100.0 30 .................................... GTGTATTTAGTAATGGTGATTTTTTAAATT 636131 36 100.0 30 .................................... CATTCATTTTTTATATATCAATAAAACTTT 636197 36 100.0 30 .................................... GGGGATTCTTATTTCACTGTAGTTACGATG 636263 36 100.0 30 .................................... CAAAAATTGATGTCACAATTAATAAAGGTG 636329 36 100.0 30 .................................... CTATTTCTGACAATGGTTGAAATTGTGTTC 636395 36 100.0 29 .................................... CTTTTTTTAAATTAATTTATCGTAAGCAA 636460 36 100.0 30 .................................... AACAAACTTATGAGAACGGTTGAACGGCTT 636526 36 100.0 30 .................................... AGCCCGCTTATTGCTTCAGTTGGTTTATAT 636592 36 100.0 30 .................................... TGGAGCAACAAGAATGATTAACTCTAATGC 636658 36 100.0 30 .................................... TTTGATGGATATCATTGATAAACTATACGA 636724 36 100.0 30 .................................... TAACGAAAGCAATACCAATCGTGCTAAAGC 636790 36 100.0 30 .................................... TATTCCTATGGTCGATATTCGAACAGTCAA 636856 36 100.0 30 .................................... CAGGGGACAAGGACTTTGACCCAACAGAAG 636922 36 100.0 30 .................................... AGAAACACCTAATGGTCTCTTAGAACCCGA 636988 36 100.0 30 .................................... AAGAAGTTAAAGACAACTTTGTTAAAGACT 637054 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 637120 36 100.0 30 .................................... CGGAATGGTATAAAGAATACAAAGAAAACG 637186 36 100.0 29 .................................... CCAAGTATCACGCAAAGAAATCAACGAGA 637251 36 100.0 31 .................................... TTGACCTGTTTATCCTTGTTAACTAGAATAG 637318 36 100.0 30 .................................... AGAGCACTAGCATACTGTTTAGTCCGAACG 637384 36 100.0 30 .................................... AGGCAAGGTATTTGATCCAACAGAAGCCAA 637450 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 637515 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 637581 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTGG 637647 36 100.0 30 .................................... TAATAGTTTACCAAATCGTCCTTGTTCCAA 637713 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 637779 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1383342-1381589 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822035.1 Streptococcus thermophilus isolate STH_CIRM_1051 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1383341 36 100.0 31 .................................... AAACACTTGGTCCATTACTCAGTCCTCAGAG 1383274 36 100.0 30 .................................... AGATACGTCAGTTGTGTTTAGTCTTGCTAC 1383208 36 100.0 30 .................................... ATTCGGTGTACCTGAATATACTAGTCGTGA 1383142 36 100.0 30 .................................... AAACCGTTCGACAATTACAAGAGTGCGGAA 1383076 36 100.0 30 .................................... TATTAAAGGTCCAGAAGGCCTTTCAACTGA 1383010 36 100.0 30 .................................... TATCTCTGAAGGTAAAGCTGAAGGAAATAA 1382944 36 100.0 30 .................................... TCCTAGCGATTACTCATGGACACTTGTAAA 1382878 36 100.0 30 .................................... GGGTGAAAACCCTAATAATACCACATTGAA 1382812 36 100.0 30 .................................... ATTTAAAGCAGGAATGTTCTTCAGTTTCTC 1382746 36 100.0 30 .................................... CGAGTTTATGCTCTTGAATGGTTGTCGTAT 1382680 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1382614 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 1382548 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 1382482 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 1382416 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 1382350 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 1382284 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 1382218 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 1382152 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 1382086 36 100.0 30 .................................... ACGGTCTGTATCGAAAAAGACAACTTGGCT 1382020 36 100.0 30 .................................... CTGGTAACTTTGAAATCTAACGCAGAATAG 1381954 36 100.0 30 .................................... GAACTTTCAGCTTATAACACGCATAAGAAC 1381888 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 1381822 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 1381756 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 1381690 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 1381624 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //