Array 1 2932077-2933604 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078009.1 Pseudomonas aeruginosa strain FAHZU31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2932077 28 100.0 32 ............................ TTGTAGCGGCCAGGGATACCGATCACCGCGAG 2932137 28 100.0 32 ............................ AAGGGCCGTATCGGTCGCGACTCTGGCTATCA 2932197 28 100.0 32 ............................ AGGAGCGTCGGCAGGTGTCGCAGCAGCCGGAC 2932257 28 100.0 32 ............................ TGCAACGACTGGTGGACGAGTCCAATCGTGAC 2932317 28 100.0 32 ............................ TTGGGTTGCAAACATGTTCATCGGTGTTTCTC 2932377 28 100.0 32 ............................ TGGGGAAGCCATGTCCATGGTCGTTTAATGGC 2932437 28 100.0 32 ............................ TGCTGCTGCGCCTGTTGATCTGAACGCCCATC 2932497 28 100.0 32 ............................ GGTGGCGGTCGCTGGCGAGCCGCCGTTGCTCA 2932557 28 100.0 32 ............................ TACATGCCGTCGAAGGGCGATATCTACATGTT 2932617 28 100.0 32 ............................ ATTCTTATCGGGGCTTTTTATCTAACCTTCTA 2932677 28 100.0 32 ............................ ATGAAAAGCATCCCCTTCGGGGACTTGTGGAA 2932737 28 100.0 32 ............................ TTCCGCTCCCGGCCGGCGGCGCGGCCCGCCCC 2932797 28 100.0 32 ............................ TCGATCACCATGACTATGCGGTATGCGCATCT 2932857 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2932917 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2932977 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2933037 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2933097 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2933157 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2933217 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2933277 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2933337 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2933397 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2933457 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2933517 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2933577 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2945279-2942129 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078009.1 Pseudomonas aeruginosa strain FAHZU31 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2945278 28 100.0 32 ............................ CAAGGGCGAGTGCGTCGTAGAGCTTCGCTATG 2945218 28 100.0 32 ............................ TTCATATCGCCCCGGCCATCGGTGATCGCCGA 2945158 28 100.0 32 ............................ GACACCCCGAACACCGATCCCTCCGACCCGAA 2945098 28 100.0 33 ............................ GTGGAAACGGTGTGGCGGATCGAGTTTCGCTAT 2945037 28 100.0 32 ............................ GGACACGGCGACGGGTTGTGCAATGGGATGGC 2944977 28 100.0 32 ............................ AACACCGCTGAATGAAGGCGAAACAGCCGAAT 2944917 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 2944857 28 100.0 32 ............................ TGACCCGCGAACGCGCTCGGCAGGTGTACCGC 2944797 28 100.0 33 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCAG 2944736 28 100.0 32 ............................ GAGAGGCAGGACCGCTGCTGGGACGGCTGGTC 2944676 28 100.0 32 ............................ GAAAAGCCCAAGGACGAAACTCTGCCGGGCTC 2944616 28 100.0 32 ............................ GAGATGGAGGCCGCCCGTCTGACCGGGATCAG 2944556 28 100.0 32 ............................ ACAGCCCCTGTAGATGCGGGCAAAGGCCCTCA 2944496 28 100.0 32 ............................ AGGGGGATTACGACGGTGACTAAGTACCTCGT 2944436 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 2944376 28 100.0 32 ............................ ATCGTCTTCGAAGGCCAGCCGGTGCTCTGCAA 2944316 28 100.0 32 ............................ ATGAGGGGCTTCAGGCTACCGTCCTGCAACGA 2944256 28 100.0 32 ............................ TGATCGCGCGGGAGCGTGTCCCGGCAAAAAAG 2944196 28 100.0 32 ............................ TGGATGCTATCCATGGTGATCTCCATAACCTG 2944136 28 100.0 32 ............................ AGTTCGTGAGCCTGATCGCGCGGGAGCGTGTC 2944076 28 100.0 32 ............................ AATAACCCGCATTGGCCCCATATAGCTAACAA 2944016 28 100.0 32 ............................ CGGTGGCTATGGGCTGGGCGCTGCATCACTGG 2943956 28 100.0 32 ............................ AGGAGGAAGAAAGCTATTCGCAGCAGGACGCG 2943896 28 100.0 32 ............................ TGGCCGCAGCGGTGCTGAGTCACTGCGAGACC 2943836 28 100.0 32 ............................ GACCGCTACTGCGCCTGCTGCTGTGGCTGCTC 2943776 28 100.0 32 ............................ TGGATGACCCTGCCGGCCGGCACCTGGAACTC 2943716 28 100.0 32 ............................ TTGGTGGCGACCACCAGGCCGTCGCGCACGAA 2943656 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 2943596 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 2943536 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 2943476 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 2943416 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 2943356 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 2943296 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 2943236 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 2943176 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 2943116 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 2943056 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 2942996 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 2942936 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 2942876 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 2942816 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 2942756 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 2942696 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 2942636 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 2942576 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 2942516 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 2942456 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 2942396 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 2942336 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 2942276 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2942216 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2942156 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //