Array 1 2035325-2037032 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134308.1 Pseudomonas aeruginosa strain NCTC11445 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2035325 28 100.0 33 ............................ TGGCAGGACTGCCTGAAGCGCTACGACCGCGAG 2035386 28 100.0 32 ............................ AGGCCGCCCACCATCGCCGCCAGTCGAGGATT 2035446 28 100.0 32 ............................ ATGAGGGCCAAGGGCGCGCCTGCCAGCGAGTA 2035506 28 100.0 32 ............................ AGCGCCGAGCAGGCGCATACGTGATCCCCGGC 2035566 28 100.0 32 ............................ TGGAGCAGCACAAAGAGCAGGGCGGCAAGCCC 2035626 28 100.0 32 ............................ TGTCTACCCAGCGTATTGGCCATTCCGTTGGC 2035686 28 100.0 32 ............................ GCAAAGAGCGATCCGATGCCATGCGCGTCAAC 2035746 28 100.0 32 ............................ TTCTTGGAAGGTTATCTGCTGCAAACGGCACA 2035806 28 100.0 32 ............................ ACGGACGGTTTCGTGGTCTTCCCCCATGCCAA 2035866 28 100.0 32 ............................ ACCCAGCCCCGCACCACGTCTTCCGTGATGTC 2035926 28 100.0 32 ............................ ATCGCAGGACAGGGCAGAAATCATCAGGAAGC 2035986 28 100.0 32 ............................ TTCATCGTGCCGATCGCGAACTGGTCGCGCGA 2036046 28 100.0 32 ............................ GCATTGGGCAGGCCGACCAGCTGATCGATACC 2036106 28 100.0 32 ............................ GAGACTTCAAGACGTTCCGGCGCGGCCGGAGC 2036166 28 100.0 33 ............................ ATTGCGCCAGATCCCGAAAGCTCTACCCGAATC 2036227 28 100.0 32 ............................ CGTGATGGGCGCCAACATGCCGTCGACACTCC 2036287 28 100.0 32 ............................ TGAATGCGAAACTTCGTGCTGTAGCTACCCTC 2036347 28 100.0 32 ............................ AACTGCTCGGCGGGCACCAGTTGGCGGTCGAT 2036407 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 2036467 28 100.0 32 ............................ TGGTTACAGGCGGTCTGGATCGACGCCGGGCA 2036527 28 100.0 32 ............................ TCGTCAATCATCGCGGGGTCCCAGCGATACAG 2036587 28 100.0 32 ............................ GTGCCGCTGGCGTAGTTGACCGCATCGACGCG 2036647 28 100.0 32 ............................ TCTTGGGAGTCCCGGCAGGTCAAGGGCCGCGA 2036707 28 100.0 32 ............................ TCGAAAAGATCGCCCAGGAACACGCAGCGCCA 2036767 28 100.0 32 ............................ GACAAGGACCGTCGCGACAAGACCGAACCCGA 2036827 28 100.0 32 ............................ AACAGGCATTCACTGGGTCGTCATCGACAGCC 2036887 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 2036946 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 2037005 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAAGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2048166-2045557 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134308.1 Pseudomonas aeruginosa strain NCTC11445 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2048165 28 100.0 32 ............................ ACTGATCAACGGTGCCCCCGGTGAGGGGCATT 2048105 28 100.0 33 ............................ AGGACAGAAGAACAGCAACCTTCGCGCCGACTT 2048044 28 100.0 32 ............................ GCGTTCCCCGTGCCGGGGTGCTGCCAACCATA 2047984 28 100.0 32 ............................ TATCATAGAATATGCTGTCGGTAATGGTAGTA 2047924 28 100.0 32 ............................ ACGTAGCGGATGACGGAGAGTTCTTGGGCGTA 2047864 28 100.0 32 ............................ ACCAAGGGGGTTCTGGCGCAAGCCAGCACTGA 2047804 28 100.0 32 ............................ TTGATGGTCTTGTCGAAGGAGCCTTGCTTCGG 2047744 28 100.0 32 ............................ GAGCTCAAAGAAGGTAATGATATGACATTAAC 2047684 28 100.0 32 ............................ TGGAAGACATCACGGAAGACGTGGTGCGGGGC 2047624 28 100.0 32 ............................ AAGATTGGTCGTCGCCGCGTGGTGAACCTGCA 2047564 28 100.0 32 ............................ AATGAGCGTTTTACACCACTAACGAGCTTTAC 2047504 28 100.0 32 ............................ TGCACCGTATTCGCCGTGACCTCGACCGGGGC 2047444 28 100.0 32 ............................ TGTAACGGTGAACCCCACTATTCCAGACTCTT 2047384 28 100.0 32 ............................ GAATCCGCCGAACAGTTCTGGCCGTTTGTCTT 2047324 28 100.0 32 ............................ TATTCGGTGAACGATGGCGGCGGGACGAATCG 2047264 28 100.0 32 ............................ GACGACGGCGACGCGCTGAGGCTGGCTGTGAA 2047204 28 100.0 32 ............................ CAGTCAGAGGGGAACGACCCGGCTCCGGCAGA 2047144 28 100.0 32 ............................ AATACGTATAGGTCGGCTCCAGTTTCATTCTT 2047084 28 100.0 32 ............................ ACATGCGACCACCATCGAGAGGAAACGTGCTA 2047024 28 100.0 32 ............................ TTAGGCCTTCTTAACGCCGCGCTTGCCCAGGT 2046964 28 100.0 32 ............................ AGCATGTTAGCCGCCTCCGCTGGGATCATTGC 2046904 28 100.0 32 ............................ ACTTACCGGGTAGCTGTACCTGATGACGTACT 2046844 28 100.0 32 ............................ AAGACCAGCGAGATCCTGGTCAGCCACCTGGC 2046784 28 100.0 32 ............................ ATTGCTGGGAGACGTATTCGGCCAGTGTCATG 2046724 28 100.0 32 ............................ AGCACGGCATTGCGGAAGTCATCGGAGCCAGC 2046664 28 100.0 32 ............................ TTCGGACACCAGCACCACGCGTGACGTCTTGC 2046604 28 100.0 32 ............................ CACGTGTCCAGCCGACACTAACAACCCTGGAA 2046544 28 100.0 32 ............................ GCCAGGTGCGCGCGCGATGACGGTGAGCCTTC 2046484 28 100.0 32 ............................ TTGACCCATCCCAGGATGTAGCGGACGACCGG 2046424 28 100.0 32 ............................ TACGGACCCGACTGATCCTAAAGACCCTGGTG 2046364 28 100.0 32 ............................ ACGGAAATTCTCACCCAGGCCAGCAGGCGTAT 2046304 28 100.0 32 ............................ GTTGGCATTGACGAACTCTACATCGACGCCGT 2046244 28 100.0 32 ............................ ATGTTCTACAACGCCGAGGAGCGCAGCTGGTT 2046184 28 100.0 32 ............................ GTGACGGTCACGCATGCGCAGCATTTTGAAGC 2046124 28 100.0 32 ............................ ACCTGCGCGTCGTGCTGGTCCTTGAAGTAGTT 2046064 28 100.0 32 ............................ GGCTTGTCTGGGAATCGTGCGCGGTCTTCGAG 2046004 28 100.0 32 ............................ TACAAGTTCAAGCGCGACGGCAAGGAATGGGA 2045944 28 100.0 32 ............................ GACAAGAAGCTCCAGGGCACCGGCGTGAAGAT 2045884 28 100.0 32 ............................ GGTGTCCTCAACGCGAAGCTGACCGAACTGAA 2045824 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 2045764 28 100.0 32 ............................ TGATTCAGGAGTGCTGGCAAGCGGTTACAGCG 2045704 28 100.0 32 ............................ AGCAGCGGCTCCAGAAAGAGGGGCGCTGCCTG 2045644 28 96.4 32 ..C......................... TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 2045584 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3938665-3937076 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134308.1 Pseudomonas aeruginosa strain NCTC11445 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3938664 28 100.0 32 ............................ TGCGGCGCTGATCGAGGAGGGCGGTTCGATGG 3938604 28 100.0 32 ............................ TGGAACGGGTGGTGGCGATGGTGATGGCGGCG 3938544 28 100.0 32 ............................ TGGAATGACCGGCCCGTCGTTGAACAGCACGC 3938484 28 100.0 32 ............................ AACCGCAGATGACGTTGGGCCGGGGCGTGCCG 3938424 28 100.0 32 ............................ ATGGACATTCCCTTTCTCTCCGACATTCTCGC 3938364 28 100.0 32 ............................ ATCAGAACTCCTCCTTTTCCATCAGTTGATGG 3938304 28 100.0 32 ............................ AAAATAGGCGGTACGCTATTCCCTATCTGACG 3938244 28 100.0 32 ............................ GCGAAGCAGAATTGGAAGGTTTCCATCAGCAC 3938184 28 100.0 32 ............................ TTCCAATTCTGCTTCGCGGGCATCGTTGGCAG 3938124 28 100.0 32 ............................ GTCGAAGAACGATCCGGGCAAAACGTTTTATT 3938064 28 100.0 32 ............................ TCTACCGTCAGCGGCAGGCGGGCAAGGCACCC 3938004 28 100.0 32 ............................ TTGCAGTCACCGTCGCCGGAGATCGAGGAGCC 3937944 28 100.0 32 ............................ GATATCGAGCGCTGCTGGGCTTCCATCATCAG 3937884 28 100.0 32 ............................ TGTCCGGGCAGTTGGCCGTTCTGGAAGGCTAC 3937824 28 100.0 32 ............................ TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 3937764 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 3937704 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 3937644 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 3937584 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 3937524 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 3937463 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 3937403 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 3937343 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 3937283 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 3937223 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 3937163 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 3937103 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGCACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCACGTAGGGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //