Array 1 154684-152719 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXO01000009.1 Salmonella enterica isolate STY44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 154683 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 154622 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 154561 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 154500 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 154439 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 154378 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 154317 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 154255 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 154194 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 154133 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 154072 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 154011 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 153950 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 153889 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 153828 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 153767 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 153706 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 153645 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 153584 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 153523 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 153462 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 153400 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 153297 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 153236 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 153175 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 153114 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 153053 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 152992 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 152931 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 152870 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 152809 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 152748 29 96.6 0 A............................ | A [152721] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172308-170815 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXO01000009.1 Salmonella enterica isolate STY44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172307 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 172246 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 172185 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 172124 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 172063 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 172002 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 171941 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 171880 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 171819 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 171758 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 171697 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 171636 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 171575 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 171514 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 171453 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 171392 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 171330 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 171269 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 171208 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 171147 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 171086 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 171025 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 170964 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 170903 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 170842 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //