Array 1 27003-26025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000067.1 Frankia sp. AgB1.9 NODE_67_length_49939_cov_37.239220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 27002 36 97.2 36 ....................T............... CGGATGATCACGTTCAGGACATCGATGTCCTTGTCG 26930 36 97.2 34 .....G.............................. TCTTTACGGTCAGTGCCTTGATGACGTCCGAGAT 26860 36 100.0 37 .................................... TCGTCATAGACGCCCTTACCGAGTCGCGCTAGCAGGG 26787 36 100.0 35 .................................... TACGACCACGCCAGGCGGCGGCGCCTCGGTTTCGG 26716 36 100.0 41 .................................... TGTCCTCCAATGCTCGGCAGAGCGTCCCAGGGGATCTGGGA 26639 36 100.0 37 .................................... ACGGTCCGAACGTCGCGGCCGAACTCGACAGCCTCGT 26566 36 100.0 34 .................................... CCCGTGTAACCCGCTCCGCAGGTCTGCGGTGGGT 26496 36 100.0 39 .................................... AGGACGGTGGCGAACAGGCCGTAGGCCTTACGCTTGCTG 26421 36 97.2 35 ................G................... AGCCGGTGGACCCGCTTGCACAGGTACAAGAACCT 26350 36 100.0 38 .................................... TCCACCAGGACGCGGAAGGAACGCGATGGCTCTTGCGG 26276 36 100.0 36 .................................... GCGGAGGCCGGAGTCGATCCGGAAACCGCAATTACA 26204 36 100.0 37 .................................... TAGCCGTCCTGGCTCTGGTCGTACTGCTCGTCGAGGG 26131 36 97.2 35 .............................C...... GTGAAGGAGCAACGCGCAGGGACGTTCTCCTGGGG 26060 35 83.3 0 .C......-.....T.......G.....G......T | C [26048] ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 98.0 37 GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CGGTCGAGCCGAAGCCCGAGGTCCCGGGCGAAATCGGCGACCGAAAGCCCATCAGCCCCCGGCATCCCACTGCCCGCGGCCACCCGCGCCCACGCCGCCCACAGCACCCGCGGCTGCGCCATGGCCTTCGGCATCCGACTCTCGCCCGCCGCCCCCCGCAGTGTGGCCGAACCGACAACAGGCAGGACCGGCCCGTCAACGGCACTACCCCGCCTCACGCCGAACCGCATCACCATGCCGCCGAACCTCCGTTCCGTCCGAGCCCGCCGCGCGCGGGCGGCGGGTCTCACCGGCGACAGACGGACGCGCCCGGCGACCTGGCCAGAACCTCCGACACGCCGACAGACCGAGCAGGTTCTGGCTGTAGCTCGACTTGTGCCCTGAGCTGCGAGGACGCCTATCTCAAAGATCCAATAGGCGATCACGAGTCGATCTTCCAGTCGAGGTTCTGGTTCGATCTTGCAAACCCGCAGGTCAGCCGGTGTACAATTCGGGCAGCT # Right flank : CCCGCAGGACGGTATTTTGCAGCGAGCGCTGCGCCCCCGGAGATCGCCGAGTCTGATTCGCATAAATCCCGAGGTGTGTTGATGCCGGTGAACCTGACGCCGGGTGAGGTCGCGGATGGGGGTGCGCTGTCCGTCTGGTTGGGGTGACGGACGCCGGGGGGATCGCGGGTTGCCGGGGCGCTGATGCTTCGCGCGCCTGGGCGGTCGCGGGCCGTCGGTCTGCGCGAAGGGATCTGGGATGTCTGTGTTCGGCCTGGGCGAGGCGCGGTGGGCGATGTCGTTCGAGCCCGTGGGGAGCGGGGTGTCCGCGTCGCGCGGGTCGGGGAGGCGTCGCGGCTTGTCGGGAGGGTCCAGCGCCGAGCTTCTCGTCGGCCGTCACGTCCGCCGGCTCTTCGGGGGGTCCGGCGGACGGAGCGCGGGCGCCCGGCCGCGTCGGAGCGCGGTCGGGCTGCTCGTCTGCCTGGTTGTTCTTCTGCTGGCCCTGCTGGATGGCTGCGGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 29892-29278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000067.1 Frankia sp. AgB1.9 NODE_67_length_49939_cov_37.239220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 29891 37 86.5 35 T.C..G.......G.......T............... GATGGTCCAGAACGTCTCTTGCTCCGATTCATCAC 29819 37 91.9 35 ..C..G.......G....................... ATCACTACTAGTCCTCACTTTTCAGTTGTGTCCGA 29747 37 94.6 37 .....G.......G....................... CAGGAGCCAGCCGAGCAAGACCCCGAAGATGAGCACG 29673 37 100.0 35 ..................................... AGTAGAACACCGGCCGCAATCGCCAGAACAATGCC 29601 37 97.3 35 .............G....................... CGTGTAGCCCGGTCCGTAGACACTCGCGCAGGTCT 29529 37 91.9 35 .....C.......G.........G............. GTCTGGGCCTTCTTGTACTGGCCGGCCAGGTGGAT 29457 37 100.0 35 ..................................... CCACCACGACCGACGTCATTCAGGTTCGCGAGCTG 29385 37 97.3 34 A.................................... TTGAGGCCACCGGCCTGGTCCGGGGTCAGTGTGT 29314 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 95.5 35 GGTGCAGGTGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CCACCTGCCCCGCCGCGAGCGCCCGGGTGCGCGCGCCGTCCCGTCCGGCGGCCCCGCCGACGCCGGCGGCGCTCGGCAGCGGGCCCAATCGGCCGACGCCCGGCCCCGGCCTGGACCGGACCTGCGAGCGTGGAGCCATCGCCCGTGCCCTCCTCGTCCAGCACAGGTACTGCGACTCCCCGCCCGTCGACCCGCAGCCGCGGCGGACTGGCCACGATCACCACCCCTCCCCGCGACCAGGCGGCCAGGCCAAGCAGCCCGACGTCCCGAGCAGACGGACCGGCTCGGCGCGCCGCGCGACCCCGTCACGAAGACAGCAGTCCGAGCGTTCGACGCCTTGACCGGCCCTGGAGAGGTTCTGGCTTATGATCGACATGCCTTCTGACCTGACCGGATGATGGATTTGAAGATCGAATGTGGCGAGGGATGCCGACCACCGCGAGGAGGTTCTGGTTTGATCTTGTAGAGCCGCAGCTCAGCCGGTGTACAATTCGGACAGC # Right flank : CAGCGGGCCAGGATCCGGGCGCGGCGGTCAGCAGGGTGCAGGTGCCGCTCTGCCTGGCGATAGGCGAAGAGGTCGGGTTTGTTGTGGCCGGGTGAGTGCGTCCGTCTGGTGTGGCTGTCGGGGGGTGCGTCGAGCTACGGGGGCGGGAGATGGGTTCGCGGGTCGCTCGTGGTGGGGCGGGGTCCGGGGCAGGACCTCGAAGGCGCGGCACGGCTGGAGGCCATCTGGAAGGGGAATGCTCCTGGCCTCGGGGCCAGGACGCGGTTTCGGTTGTGGTGGTTGGGGCGTCGGGATGGCCGGGCTGGTGTGCCGCCCGTCGGCGTGTCGATGGTGGCCGCGGTTCCGGTGTCGCCGGCGGGCTGGGCGGCGAGTCCGGTGGTGCTGGAGCTCGCCTCGGCGGCCGCGGGTTCGCATGAGGTTCTGCGCGGGGTCGTGGCGGCGGCGCTCGTCGGCCTGGACACGCGGATCGCCGAGGTGTCGGCGAGGGTCGATGTGCTGGT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCAGGTGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : NA // Array 1 22591-22271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000011.1 Frankia sp. AgB1.9 NODE_11_length_117189_cov_42.181211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =============================================== ================== 22590 27 100.0 46 ........................... TTACGTGGGTCTTTGAACCCCGGATCGAATACCTGGTTGCACCAGC 22517 27 100.0 46 ........................... AGCCATTCGCGGATCACGCGCGAGCGGTCGCAGGCGGTTGCACCGG 22444 27 96.3 47 .....C..................... CTGCTGACACCTGAAACCTATAGTGAACAGTAGGGATGTTGCACCGG 22370 27 92.6 46 ...A...G................... CTTCCTGGCGATCGCCATGTCGTGGTGTTCGAGGGGGTTGCTCAGG 22297 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =============================================== ================== 5 27 97.8 46 CCACCAGACACCGAATCGGATTGAAAC # Left flank : TCCAGCAGCACCAGCCACATCAGCCGGCTCGGCCGCGCGGGACCACCTTCTGTCACGTCAACATCCGCAAGTAGCGCGCTCAAAGCAGCTCCCCCGTTGAGCTGGTCATCGCCACGTGGTCCTGGGAATCCACGTGGGCAATGACGGTAACGGTTCGGATCCGGTCAGCACAGCCAGGGTCACGCACCGCGTTGGATTCGGGACTTCCCTGGGCTGGCCCCGGCCGGCTGTCACCCCTGTCTGACGGACAGGACCAGCGATGGCTGACGTCGATCGGTGAGCGCACCGGCCGCGCCACGAGACGATCTTCGAGGGGAGTCCGATCCGGGTGGGCCTTGGCCCCGCCGCGTCCTGGCTCGGCTTCGGAACCCCCGGCGCCCTCCGAATCCCCGGGAGGTTCCGAGGCTAGAACCAGGGCAAACCGGACGACAGTGACCGACTACCGGCAGGCACTCCGACTGCTACGATCGGAACCCGCAGCTCACGCAGGGTTGCACCAG # Right flank : TCCATCAGGCGGCCTCGAACCCGTGCAGGTACGCCAGCTCCGAGAGACGGAAGCCGTCGAACGGCTCGGGGTCGCCAGTGGCGTGCCTCGGAGGTTGTTGGGGGGCCCCCCCCGCCCTCGGGGGCCCGGCGGGGCCCGGCCGCGACGGATGTGAAGTACTCCGACCCTGCCCTCGTCGGACCTGGCGCGATGCCCGCCAGGAGTGCGAAGGCGAGGTCTTGCCTCGATCTGACCACCGAAGGTAATCTCCGTTTGCTGCACTATCAGAACAGTCGAGTGCATTATCTGCACCCATGACCCATGCACCCAGGCACGCTGATAGCTGCATGCTGATAGCTGCGCAGTCTCGTGGCAGTGAGGGCTCGCGATGCACAACAGCTACGACGTCTTAGTCCTCGGCTCGGGCGCCGCCGGGCTGACCGCCGCGCTGTCGGCGGCGGTCGAAGGCGCTCGGGTCGCTCTCTTCGAGAAGGCCGAACTGCTGGGCGGCACGACCGCCC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCACCAGACACCGAATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 33137-33527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000011.1 Frankia sp. AgB1.9 NODE_11_length_117189_cov_42.181211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 33137 34 100.0 39 .................................. CACCACGGCTGTAAGGCCGCCCGCGACTCCTACGAAGTC 33210 34 100.0 36 .................................. TGTGGCAATAAGCCTGTTACGTCGGAAGAAGGAGTC 33280 34 100.0 36 .................................. CTCGACGAAGACGCGGGTGCCTCGGTACTGGGCGTT 33350 34 94.1 39 ....T........G.................... CAGCTGTAGTTGTTCTTCGCGGTGTCGTGGTTCGAGGTT 33423 34 91.2 37 ....T........GG................... TGGTCGCACATGCCGGATCGGCCCGACTTGGGCTGTT 33494 34 85.3 0 ....T........G........T....CG..... | ========== ====== ====== ====== ================================== ======================================= ================== 6 34 95.1 38 GCACCGGCGACCACACACCGAACCGGATTGAAAC # Left flank : TCCCGGCGGTCCGGACCAGGCCCGCCGCCCTGGCGGCTCCGACCGCGGCCCGTCCCAGGAACGTCGCGCGAGTCCACCGCCGGCCGTGAACCGTGTACCCCGCCCCGGCCCCGGGCCGCGGCCGGGCCCACCCCGCAACCCTGGCCAGCCCTGACTCAGGGCTGGCGAGACCTACCCTTCGAATTCGAGAACTTTGTAGTTTGTCAGTGGCTGTCCACGGACGTCCGCTGGTGCAGGTCACGGGCCGTCCGGATTCCGTGGTCGTCCACGCTCGTCCGTCGTTGCCCGCCGGTTTGGCTGCCGGGCGACTGCTGCGTCGTCCCGGCAGTCCTCCTGATCCGGTGGGCCTCGCCGCGTCCTGGCTCCGCTTCGGAACCCCCGGCGCCCTCCGAATCCCCGAGAGGTTCCGAGGCTAGAACCAGGGCAAACCGGACGGCAGTGACCGACTGCCGGCAGGTACTCCGACTGCTACGATCAGAACCCGCAGATCACCCAGGGTC # Right flank : CGCGCGTACCCTGCCGATCGGCTCGACGGCGAGCTACGAGAGATCGTGGCGGCCGCTCGCGCCCTGACCGTTACGCGGGAGCCTTCGCAGCCGTAGGCCGCAGTTTGCCCGGCGCGGGGATCGCGAGGACGTGGCCCATGCCGACGGTGGTGCGGTCGCCGAGGCCCGCGTAGGTGGCGAACGTGGCGAGGGCGGACAGGGCGTGGCGGGCGTCGACGGAGACCGACGCGGCTTCGGCAAGCGTGTAGCGGACCGTGCCGACGGCGCCGCGCAACGGCGGGACCTTGGGTTTGACGAGGTGTTCGGCGCTGTGCAGGTCGAACTCGACGACCTGCAGGTTGCGCTCGGCGGCGTCGACGGCGCCGCCGAGGTCGAACGCGGCGCCATCGGGCCCGCGCAGGTCCGGCGCGTTCGTCCGCCAGCGCTGGGCCAGCGAGGTGAAGACCCATTCCGGCTCGGGGAACACCCGCTGGCGGCGGGCGCCCTCCTCCCGGGCCGTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCGGCGACCACACACCGAACCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 42913-43394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000011.1 Frankia sp. AgB1.9 NODE_11_length_117189_cov_42.181211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 42913 36 97.2 37 .C.................................. AGGAACGGTGGGATTCGAACCCACGGAGTCTGGCCTA 42986 36 100.0 38 .................................... CTCCGACCTCCAGAACATGTCGCCGAAGATGACGCCGG 43060 36 100.0 40 .................................... TACAGGTTCCTCCTTCGGTTGAAGCCACACACTGAGGCCT 43136 36 100.0 44 .................................... TACGCGAGTTCGGTCGCCAGCTCAGAAACCCGCTCATAGGGCCA 43216 36 100.0 36 .................................... TCCGAGGCCCACTCGATCCAGCTCGCTGGAATGGTG 43288 36 97.2 35 ...................................A GTCTGCGACCGCGCGCATCTCACTCGCGAGGCCAG 43359 36 88.9 0 ............................G...G.GG | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 97.6 38 GTTCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CCGACGGCGCGCCCGCGAGCGCCCTCGCCGAGTCCGTCCAGTTCGTGGCGGCAGGCCTCGGCCGCGTCGGCGGCGCTGTGCGGCTGGCCCGATCGGCCGGCGTGCCACCCCGTTTCCCAGCAGTGCCGGAACAGCGATGATGGGGACATGCGCGGCGGTGTTCTCGTCCAATACGGGCACGGCGACGCCACGGCCGTCGAGCCGCATCCGCGGTGGACCAACCACGCCTTCCGCCCCCTCCCACGTCCCGGCGAGCCCGGCGTCCAGACTAGACGGACCATCTGGTCCACCGGCACCCGCCGCCGCGTCGAAGATCGTCAGCCAGAACCTCCGACCCGCCGACAAACCAGGGAGGTTCTGGCTGCTGATCGACATGCCCCCCGACCTGCGGAAACAGGTGCAAGAGTGATTGAACCGCTCGCTCGGCGTCGATCTCTGGCGGGAGGTTCTGGTTTGATCTTGCAAACCCGCAGGTCAGCCCGTGTACAATCCGGACAGCT # Right flank : GGTTTTCGCCGTTCGCTGGAACTTGCGTCGGTCCGTCGGTCCGTCGGTCCGTCGGTGATCGGTGGGTCCGTGTTGCCGGGATCGGGGTGCTCGTCCGTCTGGCTTGGCTGTCGGCGATAGGGCGGCGAGCTACGGGGGCGTCAGGTGGTATCGGATGGCGCGCGGGGCCGGCGGGGGCCGTGCGGGGGTGTCGTGCGCGAGACGTCGTTGGCGGGCGTCTGGAGCGGGCATCGGGACCCTTTGAGCCTGGGGGTTCGTACCCGGCTGCGGCTGTGGTGGCTGGGGCGTCGGGATGGCCGGGCTGGCGTGCCGTCGGCGACCAGGTCGGGGCCGACGGGCGACGCGCCGCCGGCGTCGATGGTGGGCTGGCTGGCCAGCCCGGCGGTTCTGGAGCTGGCGTATGCCGCCGCTCGGTCGCATGAGGCGCTGCGAGGCGTCTTGGCGGCGGCGCTCGGCGAGCTGGATATGCGGATCGCCGAGGGAGCCGCGCAGGCAGGGCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 58452-58998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000011.1 Frankia sp. AgB1.9 NODE_11_length_117189_cov_42.181211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 58452 36 100.0 37 .................................... TTGCAGCGATGATTCCCCCGAGGGACATGATTTCCTA 58525 36 100.0 37 .................................... CTGGTGATCCACTCCGAAGACCGTTCGGTCAGACCCG 58598 36 100.0 39 .................................... GCTGTCGAAGGTGATGTCGAGGAAGACGCCCTCGGCGAT 58673 36 100.0 36 .................................... ACTTTGGCGGGCTGCGGAGCGGCCTGGACGGGTGGG 58745 36 100.0 37 .................................... GAGCCAGACCCAGACCCGGGAGCCGGGTTGGTGTCGG 58818 36 100.0 35 .................................... GGCGATCAGGAAGGTCTGAAACAGACTAACCTTTG 58889 36 100.0 38 .................................... CAGACAACGTCTACCGCCTCCTTTCGTGTAGCGCGCCG 58963 36 86.1 0 ..T..C......................G....GG. | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 98.3 37 GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : ATTGACGGCCCGCCCGCGATCGTCCTTGCCGCGTCCGCCCGGTTCGCGGCGGCTGGCCTCGGCGGCGTCGGCGCCGCTGCGCAGCTGGCCCGATTGGCCGGCGTGCTGCCCCGTTTCCAGGCGTGGCTGCGTCGGTGATGATGGGGTCATGAGCGGTGGTGCGCCCCTCCAACACGGGCACGGCGACGCCGCGGCCGTCGAGCCGCAGCCGCGGTGGACCAACCACGTCTTCCACCCTTTCCACGCCCCGACCAGCCCGGCGCCCGGACCAGACGGACCACCTGGTCCGCCACCACCCGCCGCCGCGTCGAAGATCGTCAGCCAGAACCTCCGACACACCGACAAACCCGGGAGGTTCTGGCTACTGATCAACATATGCCCCGACCTGCGGAAATATCCCAGAGAAAGATCGAACCGTCCACTAGATGTCGATCTCTGCCGGGAGGTTCTGGTTTGATCTTGCAAACCCGAAGGTCAGCCCGTGTACAATTCGGACAGCT # Right flank : CTGGATCGGGGATGGTGATCAGCGAGTTTGTGGTCGTTTGGGTGCGGGGTGTTCGTCCGTCTGGGTTGGCTGTTGGTGGCGGCGCAGCGAGCCTTGGGGGCGAGGAATGGGTTCGGATCGCGGTCGGAAACGGCACGGTGGTGTTGTGGGCGCGAGGCCGTTGGGGGATGTCTGGGGTGGGCCTACGAGCCTGGGGCCCGGACCCGGTTGCGGCTGTGGTGGCTGGGGCGTCGGGATGGCCGGGCTGGCGTGCCGCCCGCGGTCAGGCCGGTGCCGACGGGCGACGTGCGGCCGGTGATGGTGGGCTGGTCGGCCTGCCCGGTGGTTCTGGAGCTGGGGTATGCCGCGGCCCGGGAGCATGAGGTGTTGCGGGGAGGGTTGGCCGTGGCGCTCGTCGAGCTGGATGCGCGGATCGCCGAGGGGACGGCGCTGGTCGGGGTGCTGGCGGCGCGGGTGGCTGGGAGTCCGGCTGAGCGGCTGGTGCGTGAGGCTGAGGAGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 61088-61336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000011.1 Frankia sp. AgB1.9 NODE_11_length_117189_cov_42.181211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 61088 33 97.0 40 ..G.............................. GTCAGCCAGCCACCGAGCACCGGCCCGCCGGCAATGCAGT 61161 33 100.0 42 ................................. ACGCTGGGATTCCGTGAGAGCGTCGGGGTCGACAGTGAAGTC 61236 33 100.0 35 ................................. TCGACCGATCTTCAAGAAAAAGGTAGTTGTCGGTC 61304 33 87.9 0 ..........A..G...........G....G.. | ========== ====== ====== ====== ================================= ========================================== ================== 4 33 96.2 39 CCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : GTCGAGCCGCGGCCCGAGGTCACGGGCGAAGTCGGCCACGGAGAGGCCGTCGGCCCCCGGCATTCCGCTGCCGGCGGCCACTCGCGCCCAAGCCGCCCACAGCACCTCCGGCTCCGCCATGGCCCGCGGCACCCCACCAGCAGCCGCCCGGCGCCGCGGCCTTCTCGGGCTGACGACGGCTCCGTCGCGCCTGTCGGGCACCCGCCCCTGCCAGCCGCCGAACCGCGCTCTCATCCCGTCCGCCCTCCACTCCATCCGGACCCCCGGCGCGGCGACCGCAGGCCTCGCTCACTACGGACGGACGGCACCGCGGCACGGCCAGAACCTCCGACACGCCGATAGCCCAAGGAGGTTCTGGCTTCAGATCAACATGTGCTCCGACCTGCGAAAACCCGGCCAGAAACGATCGAACGCCCCGCCGCGAGACGATCTCCATCAGGAGGTTCTGGTTTGATCTTGCAAACCCGCAGGTCAGCACATGTACAATTCGGACAGCTGTC # Right flank : CCTCGAAGTAGACGTGCCGCTCTTCCGCTGTGGTCCGCACCAGATCGCATATTGCAAGGCGGATGGAAACACCTGGGCGGTCGCGATCACTGGCAGTTTCGGGGCCTGATCCAGGAATCACGTACTTCGGGGGCGAACAGGGGACGGGCACCCAGCCGCGCTTTGGCGCGGCCAGGTGCCCGTCTGGGGAGGCCTGGTTTCGGTCAGCAGGTACCGGCGACAGCGTTGGCGTGGCCGGTGTAGACCCAGGCGTCGGAGAGGTAGCCGGGGGTGCCGTTGTAGGTCGTGTGGTCCCAGAGCGTGGTCGCGCCGTAAGGACCGGTCACCGAGTCGCCTTGCGCGGTGCAGTCGATCGAGAGCACGGTGTCCTTGGGCACGCAGCCAACAAGGCCCGTGTTCCCGTTGGGTCCGGAGCGCAGGTTCAGGCACGGGTCGATCAGGACTCGGCCGCTGCCCGCGGGCACCGGCTGCTGGGCGGTCGACGTCGGCTGCGTCGGTGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 33945-33786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000072.1 Frankia sp. AgB1.9 NODE_72_length_45754_cov_36.227948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================= ================== 33944 23 100.0 45 ....................... ATCTCCCGAGTGTGGCGGGACGCGAGCACGCCCGCGTTCGGTCAC 33876 23 95.7 45 ...................G... GCCTCTCCAATGTGGCGAGACGCCAGAACGCGTGCGGTCGGTCGT 33808 23 95.7 0 ...G................... | ========== ====== ====== ====== ======================= ============================================= ================== 3 23 97.1 46 AGCAATCGACCGCGTCGTGAGGT # Left flank : GGACACCCCGTGGTGATGGTTGGCCGACCGGGTGGCCGGCGCCACGTGGGTCTGGCCCATCCACAGCCGCTCGGTACCGACGGTCGTGCCGGACAGCGCCTCGACCCGGCGCATCCCCTCGGTCTGCGCGGTGTGCGCCGACAGGCCGGCGGGGCGGATCTGGTGGAGCCGGCGGTGGAACGCGTCGAACTCCTGCGGGGTCGGCTCGTCCGGCCCGGTCGCCGTCCCCTCGGCTGCGGACGGCCCCTTGGCGACGGGCGCCCTATCGGCGGTGCCCGTCGGGTCGGGCGAGGCCGCTGCTTGATCAGGCACGGTGAGCCTCCTCAGCGTGTTTCGGGGACCGGTCCCGTTCGGCAGCACCCGGACGGGTCGGCCGCACGTTCGTTCCTACGTGGTGGTGACGGAATCCAAGCATCCGCGACCACCATGTAGGAACGATCGCGTGGTGGTGAGGTATCTCCCGAGTGTGGCGGGACGCGAGCACGCCCGCGTTCGGTCAC # Right flank : GCCTTTCATGTGTGGCGCGAAGCGAGATCACCTGCGGTCGGTCACCGGCCGACGAGGCGTAGCGGCTGGGGTCGGTCGCGGTTGAGCTCGTCGAGCGCAGCGGCCGTCGCCGCGTCGGCGGGCAGGTAGACGACGAGACGCTGGTCGTCGTCGACGGAGAGCTCAAGGGTCTCGTAGGCGAGCCGAAGCGCCCCGGCGCCGGGGTGGGCCAGGCGAAGGACGCCGGTGGCCTTAGGCAGGCCGGGAACCGTGTCGACCCGGTGGGTGAAGGCCTCGCCGACGGTGACCGTCAGCTCATCCGCCAGCGCCGCCATATCCGGGCGAGCCCGGAACGGGCCCTGTTTGAGGGCCGCGACCTGTTCGTCGGCGACATGGTCCCAGTCGAGGTACGCCTCGCGGGCTCGGACGTCGGTGAAGAGGAACCGGGCGAGGTTGGGCTGCGCGGCCTCCAACAGCCCCATGGGTCCGACGAGCCGCTCATAGCCTGCGGTGTGCGCGAG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAATCGACCGCGTCGTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 99339-99481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000012.1 Frankia sp. AgB1.9 NODE_12_length_116905_cov_40.678202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================== ================== 99339 23 100.0 37 ....................... TCAGGCAGCGCCCGCAGGACCCGCCGCCGCGGCTTCG 99399 23 100.0 37 ....................... CTGGACAGCGTCAGCAGGATCTGCCAGCCCGGTTTCC 99459 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ===================================== ================== 3 23 100.0 38 CGTTCCGCGGAACGCGGAGATCG # Left flank : ATGGACACGCTGCCCTTCCTGCGCCGCAACCTCTGGGACGCCGGCGTCGAGGACGTCGTCACCGTGGTCGTCGGGCGCACCGAGGAGGTCGGCGGCTGGTGGACGACCCCGGTCGCGCTGCTGTTCATCGACGGTGGCCATGCCGAGGAGCAGGCCCAGGCTGACTACGCGGCGTGGGCCCGGCACGTCGCCCCCGGCGGTGCGCTGCTCATCCACGACGTCTTCCCCGACCCCGCCGACGGGGGCCAGGCGCCGTACCACCTTTACCTGCGCGCCCTGGACGAGGGCTTCAAGGAGCGGTCCCGCACGGGTTCGCTGCGGGTCCTCGAACGCGTCCAGTAGGGGTCCCGGTTCGGGATCTGGCACCTGCGGCTTGGCCGCGCCTCGCCGGCCGCCGCCGCGTCGGACGCCCGCGCCAACCGGGCGCAGGCCGACGCCATCGCGAACCGCGCCCATTCCGCCCTGGCCGGCTGACGGTGCCCGCGGCATCCCGCCAGCCG # Right flank : GTTTGGTTAGCCCACGCGGCGGTCAGCCCGTGACCGGACCGCCGCGCGGTCGGCCGTTCCGGTCCAGCCACACGTAGTCGTCTCCCACCCGGACGCCGCCGAACTCGACCGGCGCGGACGGCACCGCGTCGCGGCCGGCGGTGTCGCAGGCGTACGGCCACTCGACGCCGGACCAGCGCTGGCTCCAGGACGTGCACCAGCCCGTCGCCGGCGTCTTGGCGGAGACCGGCCCGCGCTCCAGGTCGAGCACGGTCGTCTCACCTCGGACCCGCAGGACGTACCGGGTGTCGCTGACCCGCAGGACGAAGTCGCCGCCCTGCCCTCGGGCAGCAGGGCCCGCTCCGGCCGCGTTGGTGAAAACCCAGGAGTCCCCGGCGTCCCAGGACCAGGTGGTCCGCCCGGTCTCGAGATCGAAGCCCTCCAGCGTGACGCCGAAGTTCGCGAAGGCCGCGTTCAGCCCCGCTGTCACGGTGCCGCGGAACACGCAGCGCACCGGGTGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTCCGCGGAACGCGGAGATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 7058-6604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYX010000157.1 Frankia sp. AgB1.9 NODE_157_length_18310_cov_39.679647, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 7057 29 93.1 32 .....................T......G CCCTGAGCGAGCCGGAGACTGCGCGAATCCTC 6996 29 100.0 32 ............................. CCGGCCGGGCAGATGTCGCAGAGCATGGTGTC C [6991] 6934 28 96.6 32 ............-................ TTCCCGGCCACCCAGCCCGTCCGCGGGACCGT 6874 29 100.0 32 ............................. ATGGGCCCGTCGGTGACCGGTGCGTTCACCAC 6813 29 89.7 92 .......T..............A..C... CTGTCCGCGACGGCCTCGTTCACGGTGGTCCCGTCGTCCCCGCCCGCGGGGATCTTCCGTCAGACACCAGGCAGCTCATGCGACGTCAGGCA 6692 28 93.1 32 .......-..............C...... GTCACGCAGCTGCTCGCAGACGCCCACGCCCT 6632 29 86.2 0 ..G.....A..A.....A........... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 7 29 94.1 42 GTCGTCCCCGCCCGCGCGGGGATCTTCCC # Left flank : GCCTCAGCCGCCCCGTCGAAATCCGCCTCGTCCCGCTCCATCCGGCACCTCCAATAGGCCCTGCAACATCAGCCCCAGTCCAACATCACGAACCCGAAGAGGACCAGGCCCCGCGAACAGCTGTGGAAAACCCTCCGCCGCACGGTCCTCAGGAAGGCCATCCCCAGAACACCGCGAACCGCATGACGAGCCACAAACGCCGAGGCCATTCACGAGGACTCATCTCACGGCGCGATCGCACGTAAGGGCCACCGCGATGGCGCCCCGCAGGAACGACGCCCACATACCCCGCGGCCTGACCGACCGCTCCCTGATTCACCGACCACCGGCGTCCCAGCAGACGACTCCCGGCGCCGCCGCAGCAGGTCAGCGTGGACAACGCAGGCAGGTAGTCAGTCAGTCCACCGTCGCACCGAGCGGCGGCTGGCCAGACAAGAAGCCGCGCCAACGAACCGATGTGCTTTCCTGTACTCGGCGGATAAACTCGCAGGTCAGCAAGC # Right flank : GGTAAGAGCGTGGCCGGCGTGAAGCGGGGGCTGTCGTCCCATGGTCGCGGCCCAGTCCAGTCCGGCATCCGACGACCCCGCCGTAACACAGGCACGACGCACGATCGAGGAGAGCAACGCCAAGCTGACCCGCTACCGGGCGGCGTTGGACGCAGGAGCCGACCCCCATGTCGTGACCGCATGGATCGCACAGGCCCAAGCCGAGAAGATCGCCGCCGAGCGCCGCCTCCGCCAGGCCAACGAGGACCAGGGAAGACAGCTGACCCGCGACGAGATCAGCGAAATGATCAACTCACTCGGGGACATCGCCGTGGCGCTCTCTGCCGCCGAGGCCGCTGAAAAGGCGGAGCTGTACCGCCAACTCAACCTGCGCCTGGCCTACCAGCCGGCAACCAACACGGTGCGAGTCGCCGTGAAGATCGACTCTAGCTACCGTGAGGTAATGGATCGTGTCCGAGGGGGGACTTGAACCCCCACGCCCGTTAAAGGGCACTAGCACC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCCGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //