Array 1 9823-8418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBW010000028.1 Pseudomonas aeruginosa strain 131709 13-1709_R1_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9822 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9762 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9702 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9642 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9582 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 9522 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9462 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9402 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9342 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9281 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9221 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9161 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9101 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9041 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 8981 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8921 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8865 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8805 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8745 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8685 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8625 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8565 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8505 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8445 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1102-114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBW010000127.1 Pseudomonas aeruginosa strain 131709 13-1709_R1_(paired)_contig_127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1101 28 100.0 32 ............................ ATCACCGCCGCCAGTCCCACCGTTTCCGTCTC 1041 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 981 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 921 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 861 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 801 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 741 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 681 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 621 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 561 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 501 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 441 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 381 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 321 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 261 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 201 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 141 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGGAGCGGGCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 285-1393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBW010000033.1 Pseudomonas aeruginosa strain 131709 13-1709_R1_(paired)_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 285 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 345 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 405 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 465 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 525 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 585 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 645 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 705 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 765 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 826 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 886 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 946 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1006 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1066 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1126 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1186 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1246 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1306 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1366 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GTGTAGGCAGCTAAGAAATTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTGTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCG # Right flank : TGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //