Array 1 1684-2323 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELV01000004.1 Thermus scotoductus strain 28_S28 NODE_103_length_7116_cov_26.9639_ID_205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1684 29 100.0 32 ............................. GATAGCTCCTCCCGTTGAACCTCAGGATGTAG 1745 29 100.0 33 ............................. GCGGCCAGCACGACCGCGTCCCGGGCGTCTACC 1807 29 100.0 32 ............................. TCAGCGGCCTGGAAGAAGGGGGCCTGGGCTGG 1868 29 100.0 32 ............................. GAGGTCCCGAACGCCCGGACCAACAGGGTGTT 1929 29 100.0 32 ............................. GCTCCGGGTAAGGCGGTCGGCGATGGTGGAGC 1990 29 100.0 32 ............................. AGCCATTTCATAGTGCGGAGCAAGACGCCCCA 2051 29 100.0 32 ............................. GTAGGAAAGGAGTGGACATATGGGAGGAAAAC 2112 29 100.0 32 ............................. GCACTCTGGAGGACCGCACTCCCGGACGAGAA 2173 29 96.6 32 .........................A... AGGCCAGGGAGGACGGTTTCGCTCGCAGCCCA 2234 29 100.0 33 ............................. GGCCCTGTCCGCATGGAAAATCAGCAGGCTTCC 2296 28 89.7 0 ......................-...T.A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : AGGCTGGGTTTATGGTGGCGCACCGTGGATTTGGCGATAGGGAAGCTGGGGTGGTTTCAAGCCTCGTTTTCTTCCTGCATGGGTCCACTCCCCAGGTTTCCAGGTAGAAGGCTCTCAGTTCCTCGGGTGATATCGGGGAGATTTCCCGTGGAAGTGGGCTTCCGGTTCGGAACCTCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGTATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1839-2601 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELV01000079.1 Thermus scotoductus strain 28_S28 NODE_171_length_3980_cov_48.9478_ID_341, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1839 29 100.0 31 ............................. GCGAACTCCCCGAGGCGCTTGGGGCGGGCCA 1899 29 100.0 33 ............................. CTCGGGGTGCTGGGCCCGCTGGGCGAAGCCCAC 1961 29 100.0 32 ............................. TCCATCATTCTAAATGGAAATCTGTTTACAAA 2022 29 100.0 32 ............................. GTCGGGGCGTGTACCCGACCGCAGATGGGCTC 2083 29 96.6 33 ............................T GGCAGGCGCCTGAGCCGCCGCGGGAGATGGTCC 2145 29 100.0 32 ............................. CCTGGCGGCCTGCGACTGGACCCAACTCCCCG 2206 29 100.0 32 ............................. GGTGCCACGAAAGAGCTCGTGGGCCCGGTGGA 2267 29 100.0 32 ............................. GAGCTCATGGCCCTCCTCAAGGCCGGGGCCCA 2328 29 100.0 31 ............................. AGCCTGCAGACGCTCAAAGCGCACCGTCAAC 2388 29 96.6 35 ............................T GGTGGGGGCTTCCGTCAGCAGGCTGGAGCTTTCCC 2452 29 96.6 31 ............................T AGCCCGTCCTGGAGTACGGTGCCGGGCGGCC 2512 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 2573 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 13 29 99.2 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGATCCTACCCGCCCGGGGGGCCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGAGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAGGAGCCTTAGGGGGGACCTCACCCGCTTCTTCGTGGAGGTGGACACTAGCGTTTTCGTGGGCCAGGTGAGCGCTTTGGTCCGGGAGCTGCTTTGGGAGAAGGCTCTGGAGAAGGCGGGCGAGGGACGGGTGGCTATGGCCTACAGGGCGAACAACGAGCAGGGCTTCGCCCTCAGGCTTCACGGCTACACGGACCGGTTTTTGCGGGACTTTGATGGTATACTCTTAGTGAGCACTCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAGT # Right flank : GGGCAGGAGGTAGAACCAAATGGGTGACGACTCCCCGGACTAAAGTCCAGGGCTTCTCGGGCATGGTATTGCTACCCCCGAAGGCCCCGTCCAGGCCCTTGCCAGGATGTTTTGGGCAGCGGCCACATCCCGGTGGAGAAGCGCCCCACACTGGGGACAGGTGTACGCCCGCACCCAGAGAGGCTTCTTCTCCCTATGGCCGCACACCGGGCAGTCCTGGCTGGTGTACTTGGGGTCTACCTTGATGACTCGCCTACCAGCCAAAACGCTACCGCTTGCGCGGTGAGCCGCCGCTTTGTAGGCGAGGATTGCGAGAAACTGGGCCCAGCCCGCATCGTGTATGCCTTTGGCTATATGGGAGCGGGAAAGGGCTTGAACGTTCAGGTCTTCGTGGACGATGGTTCCGTAGCGGTTCACCAGCTTTCTGGCCACCTTGTGGTGGAAGTCTTTGCGCTGGTTGGCGATCTTGCGGTGGAGCTTGGCTACCTTGAGCCTGGCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3119-3301 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELV01000389.1 Thermus scotoductus strain 28_S28 NODE_60_length_10540_cov_41.6905_ID_119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3119 37 100.0 34 ..................................... TTCCTGAGGTAGTCTTTTGCTTCCTTTAGAACTT 3190 37 100.0 38 ..................................... CAGGCGGGCCGTAAACCCGCACGCTAGATGTCAAGGAC 3265 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 36 GTCGCACTCGGGCTTCGGCCCGAGTGAGGATTGAAAC # Left flank : GAATGCAACGCTAAGATTGGGGTAAAAAAGGCTATGGAGATCGTTCATGCTCTCAACCTGGGGGCTCGTTTTTTGCTTGAGCTATGCGCTTTGGCCGCGCTCGGCTATTGGGGCTTGCGGACGGGTCAAAACGGGCTCACGAAAGCCTTGCTGGGGCTCGGGGCTCCCCTTTTAGCGGCGGTTGTCTGGGGGACTTTCGTCGCGCCTAAAGCTTCGGTTTCGCTACCGGGGGCGCTGCGGCTAGGGCTCGAGCTTTTGGTTTTTGCCGCCGCTGCAGCCGCTTTGCTTGCAGTCGGCAAGCCTGCACTTGCCTGGGCTTTCGCTACGGTGGTGGTGATCAATCGAATTTTGATGTTCTTGTGGAAACAATAAAACTAAGACGGTCGAACCACCAGCCAAGCTCCTAACATCAGTAGACCCAGGCCGATGATCTTGCCAAGATCTAGGGGACGCACGCCACTACCCATCCAGCCGAACTGATCAATCAGCGTGCCAATTAA # Right flank : CCCGGTAATTTCCGGATGGAAAAGCATCTTTCCTGCAGGTCGCACTCGGGCTTCGCACCTTAGAGACTGGGCCTTGTGGGTTAGCGCGAATTCTCGGAGGCGAGGCTCCACCTCCCGGAGAAGGAGGGCAAGGAGGGAGAAGGGAGAGCAGCTCCCCAGAGGACCGTGCCTCCTGCAACGGCCTACCGAGAACCCGGGTGCAATCCAGGTAGGGGGGTCCTCCAAAGTCCAGTAGCGGCCTCCCTCCACCCGGGTCTTGTGATACAAAAGGCCGGGTCCGGTATCACAAGTCCCTTACACCCGGACGACCTTACCCCTCAGGCACCGGGGAAACCCCTGGCCATCGGCAGGGGTGTGTAGGCTTTCCTGCCCGCCCCTCTACCTCCCCGGTTGACGTGGAACCTGCGCCTTGTCCTCCTCCTGGACGAGGCCAGTAGGGCCCTTGGGGAGCTTGCTGGACTTCTGCGCCGGCTTCCCAATCCCTACCTCTTCATCCGCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCTTCGGCCCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 3354-2959 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELV01000083.1 Thermus scotoductus strain 28_S28 NODE_175_length_3899_cov_35.2378_ID_349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3353 29 100.0 33 ............................. GCCACCAGCACCGCCCTCGGTCTGAGCGAAGGC 3292 29 96.6 31 .................A........... AGGTTGCGAGCCTCAGGGCTGGAATGGACAC 3232 29 96.6 33 .......................A..... GATGGGGCGCTCAGGGCATTCCCGATGGCGTTC 3170 29 96.6 32 ............................T GCCGAGAGCCCAGGCCAGCCAGTCCAGAGGAA 3109 29 100.0 32 ............................. GCCGCGGCCCCCAGGTAGGTCAGGGCTATGGT 3048 29 100.0 32 ............................. ACCGGCGCTACGAGGCGCTGGAGGCCCTCCTC 2987 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.5 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : CCCGGGTGGCGGTCCTCCTCAACGAGGAGGCCTACCTGGGGCGGGAGCTTCCTCACCACGTCCTGAAGGAGGGGGGCGTGGAGGGAGCGGGGGCTTACGGTGGGATACCTGCCCCGGTACAGTCCCCATTTGAACCCCATGGAGGGTGTGTGGCGGCGGGTGAAGGGGTTTTTGATGCCTCGGCGGCACTACGGGGGGGTTGAGGAGCTTAGGGAGGCGGTGGTTCAGGCCCTCAAGGCCCTGGGGGGTGTGGAGTTGAAAATCTTGGGGGAGGGTACTTAGCTGAAGCAGTCGGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGAGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAGT # Right flank : GAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAACC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //