Array 1 3225503-3225103 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_015578.1 Treponema primitia ZAS-2, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                        	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=======================================	==================================	==================
   3225502	    39	 100.0	    34	.......................................	AAGTAAGCCTTTTTTACTGGTAATTTTTCGGCCA	
   3225429	    39	  97.4	    33	.....................................G.	TTACGTGATAATATATATTTTACATTTTTATGG 	
   3225357	    39	 100.0	    33	.......................................	CATGATATCCGTCAACGTTGAATGGTTATACTT 	
   3225285	    39	 100.0	    34	.......................................	GAACCCCACGTTGTTATGTTCAACGGTGCCTTCA	
   3225212	    39	 100.0	    32	.......................................	GTGCAATCTGACACGCTTGTCTAGTTTTTGTG  	
   3225141	    39	  97.4	     0	......................................G	|                                 	
==========	======	======	======	=======================================	==================================	==================
         6	    39	  99.1	    33	ATTTTAACCAATGACCTGAATTAAAAGGGATTGCGACTT	                                  	       

# Left flank :   CCTGTATGGGGGTAGTATAGGTACGGGGTTGGGGATTTGTCAATGTCGATATTATGTATAGCTTTATCGGCCAGCCGTGCGGATATAATCCGTTTGTTTTCTCCGCGCTCTGTATAAACTGTAAACAATATTTTCCCATACATTCCTATTGTTTGCCAGCTCTCTAACGGTATAGTCTGTTATTTTTGGGTATCTTTTTCTAAATGAGGCACAGTCCCGTTTTGGTATCTTTTTCGATGAGGCACTGCGTGTCGTAGACAAAGGGCGGAATTTCTACTATATGTTTCGTATCCTGCATTTTGGTTTTTGACAGTCTGCGAATTCTTCCGCTTCCGGGCAGGCAGCAGAGGGAACAGGGTTCGCATAAATGATAATTGCTTATAAAAAAAGGAGTTATGGGATGAAATGGGAACTATGCTTCTGTGAAATCGGATTTCAGAGAGGGGTTCGCGAAAAGTGGCAAATAAAGCATTGTGGGATAAGGAATTATATGGGGGTGT
# Right flank :  TTTACACGGTAATATACAATTTGAGTTTCCCGTATTTTAACCACTGACCTGTTTAAGGGATTAAACTGCCCCCTGTAATGCCTAGCAATTCTCTTTTTAGCCACCAATAGATGGCTCTCTTCTTTGGGGCATTTCGGAGGCCTCCCGCAATGCCCGCTTGTACCCCGCATGCCCGGGTGGTACAATACCCACATGAAGCTGTTTTACAAAAAAATCAGATTCACCCTGGCTTTTGCGGGGGAGTTACGGTTTCCTGTGCCTCCTGCGTTTGTCTTTAGAAGTATTATTGGTGCTCAGCTGCACCGGATTTGCTGCATCGCCCATGGCGTTAAGTGCCCGGATTGTATGTTTAGCGGGACCTGCGCATACGGGTTTGCTTTTGAGTCAATCCTGCCCAGGGATAACCCTGTGCTTTCAGGGCGGGATCGGATTTCCCATCCGGTAATAATTGAAACAGAGAGTTTTCTTGAAAAACCCGGGGATTCCCTGGGCTTGTACCT

# Questionable array : NO	 Score: 3.21
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTTAACCAATGACCTGAATTAAAAGGGATTGCGACTT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-2.50,-4.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,0.78   Confidence: MEDIUM] 

# Array family : NA
//