Array 1 4167-2368 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVX01000043.1 Streptomyces subrutilus strain JCM 4834 sequence043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4166 29 100.0 32 ............................. GCCTTGCGCACGGTGATGTCGCTGACCCCGTA 4105 29 100.0 32 ............................. CTACGTCTCTCGGTTTTGGAGACCGAGCGGGA 4044 29 100.0 32 ............................. CGCGAAGGTTGGTAGCGTGGGTTCGATTCCCG 3983 29 100.0 32 ............................. GAGGAGTACCACGAGCGGCTGACCGCGAACCG 3922 29 100.0 32 ............................. GCGATGGAGCGGGCACTCACGCCGCAGCTCCA 3861 29 100.0 32 ............................. TGCTCGAATCCGGCGACGACCTCGACGGTCCA 3800 29 100.0 32 ............................. GCCTCCGGCTCCGGCTTCTCCGCCGACCCAGC 3739 29 96.6 32 ..................A.......... GGTGCCCGAACCCAACGTCCCGATGACGGACA 3678 29 100.0 32 ............................. GATCCGTCCGGCCTCGTGGACAAGGACACCAA 3617 29 100.0 32 ............................. CACTTCCCGAGCTGCTTCGAGTTCGGGATCTT 3556 29 100.0 32 ............................. GACCAGTTCCGGACGTGGCAGCGATTTCAGCA 3495 29 100.0 32 ............................. GCCGTCAGCGCCTTCGTGCAGCTCTTCCAGGA 3434 29 100.0 32 ............................. TTGACGGCGGCGTCGACGCGGATGGGGGTGCT 3373 29 100.0 32 ............................. TGGGACGTCATCGGCATCCGCGCGGCGGCCGG 3312 29 100.0 33 ............................. ACCGTTGGCGCGCACCGGCGCGGCGCCAAGCCC 3250 29 100.0 32 ............................. ACCCCGAGGGGCACTCAGTGGGGCGCACAGGG 3189 29 100.0 32 ............................. GAGGCGGATTCCCGGCACTCGTCAAGCTCCTC 3128 29 100.0 32 ............................. TCGACGTTGCGCCGGCGCCTGCCCACCCAGAA 3067 29 100.0 32 ............................. TGGCTGAAGTGAACTTGGACGCCCTGGACCAT 3006 29 100.0 32 ............................. GTCCAGATCAACCGAGAGGGCCTGGCCGCCGC 2945 29 100.0 32 ............................. CATCATGAGCACCAGGACCACGACCACCCCGG 2884 29 100.0 32 ............................. CCTCCGACGACCAGGCCGAACGTGCCGGTCAG 2823 29 100.0 32 ............................. TGTGGGCAAGCCTCCCTGGGGGGTGGGCAAGC 2762 29 100.0 32 ............................. GCCACCGTGAGAGCCACGGGGCCGCCGAGCAC 2701 29 100.0 32 ............................. GACTCCGTCAACCCAGAAGAGGACCTATGACC 2640 29 96.6 32 ..............T.............. CGCACGATGATCAAGACGCAGGGCCCGGCCAT 2579 29 96.6 32 ..............T.............. CACCTCGCGCCGTCGGTCACGCCCAGGGCGTT 2518 29 93.1 32 ..............TT............. CGTCCCGGTATCGACGAGCTCGTCGCCCGGTA 2457 29 96.6 32 ..............T.............. CATGGGAGCGCCGAGGACCGGCCGATGAGGAG 2396 29 93.1 0 ......T...T.................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.1 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCGACCAGGTGAATCTCCAGTCCGACCGTGACAAGGTGCTCCCTGCTGGCCGCAACTACGCCATCGAGGCCACCTGGTGATGGTTGTAGTACTCACTCAGTGCCCCGTCGGCCTGCGCGGCTTCCTCACCCGCTGGCTCCTCGAGATCTCCCCGGGAGTATTCATCGGAGACCCTTCAGCTCGAATCCGGGAGCTGCTGTGGTCCGAGGTACGCAGCTACGCAAACAACGGGAGAGCCCTCCTGGCGTACAGCTCGGACAAGGAGCAGGGCTTCGCTTTCGAAACCCACGACCACAAGTGGAATCCGGTGGACCACGAAGGAGTCACGCTGATCCATCGTCCAAACACTGCCACACCGAAGTCAGCTGCTCAGGGATGGAGCAAAGCCGCTAAGCGGCGCCGGTTCGGTAATATTTAGGCCAATTTGAACCTAATGTCTGATTCACTGGAAGTGCATCAAAATCACGGTTCTCGCGGGTAAAGCCCCAGGTCATTCAGT # Right flank : TGCTGCCCCCGCCGGTGCCCGAGCGGTAGCGACTGCTCCCCGCGTCCGCTGCTCCGGCTGCCGCCTGTCCGCAGGTTGTTGCCAGGTCCGGGCGCCGGGGTTTCCCGCGGCCGGGTTTCCCGGGCCCCGGCTGCCTGGTGTCTGCCCGTGGTCTGCTGTTGTCGTGTCCGGCCTTGTGGGTCGTGGCGTCGTGGCCGTCTTGGTCGTGCTTGTGCTGCTGCCGAGCAGGTCCGGGCCGGCTGTCCGCGCGCGGCCGGGCCGGCCCGGTTGGTTGGCCGGCCCGGGAGGGCGGAGTTGGTGGTGAGCCCAACCGGGCCCGCCCGCCGCTGCGCCCGCCCGTGCTGCTGGGGTGCGGCCCGCAGCCTGCTCGGCTGAGCCTGCCTGGCTGTTGTGGTGTTCCGTGCGCCGGTGTCCGTCCGCTGCCCGGCCGCCCTTTGCCCGGGCTGTTGTTCGGTGGTGCGGCGTTCCGGTGGTGCCGGGCCGGGGCCTTTGTCAGGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14602-13719 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVX01000043.1 Streptomyces subrutilus strain JCM 4834 sequence043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14601 29 100.0 32 ............................. CCACCGCGGCCCGCGCACGCATCGCCGCGGAA 14540 29 100.0 32 ............................. AACCTGTGCCTTACGGTCCTTGGCTAGCTTGG 14479 29 100.0 32 ............................. AAGCCCGAGGGCGGAACGGAAGGAAGCGCCAA 14418 29 100.0 32 ............................. CATCCTTTCGGGCAAGACGGACGGTTCGCTTG 14357 29 100.0 32 ............................. GGCTGGCACTGCCACTACCACGTGCTGCTGTT 14296 29 100.0 32 ............................. TACCCCGCGTGGCGTCCGCCCAGTACGGCGCA 14235 29 100.0 32 ............................. GCCCGGTTCCCGTCGACGCCGTCGGTGTTGCC 14174 29 100.0 32 ............................. TGGCTCCGCCGCAACACGGGGCTGACGAAGCT 14113 29 100.0 32 ............................. AACCCGGAGAACCCCGACCCGGTTGATGACGA 14052 29 100.0 32 ............................. GTTCGGCAGAACATGCGGATGACGCCCGAGTT 13991 29 100.0 32 ............................. GACCACGATGTTCGCCCCCGGGCAAGACTCCG 13930 29 100.0 32 ............................. AACTCGCCAGCTGGGATGGATCACCACGTACA 13869 29 100.0 32 ............................. CGCATGGGCCAGAGGGTTGCTGGTCCGCTGCT 13808 29 96.6 32 ..............T.............. TCGTCGGCGATCGACTGCCACTCGTAGGTGGC 13747 29 86.2 0 ...........A.G..T.......A.... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGCGCGTGCGGGGAGCAGTCGGGCCTGCCCTAGAAACAGGTAGCAAGGTAGGGGCCATCCCCGCGCGTGCGGGGAGCAGGCTTGCTGAGCTGGGACGTTACAGGGCGCGGGGCCTGTTCTGAAGCACTTTCACTGAAACCGGCATAACGGATATCTGTGGTGCAGATGCAGGTTCTTCTTGCGGTCTCTTCCCGTACGTCTCCGTCACAGGCGGTCGTATGGGAGTAGTCATCGCAACCCCACTCTCGACACCCGAGTGCGACGCCGGCGATGTCCGCCTCGGCGTCTCGGGTTCAAATGGAGTGCTTTCCAGCAGAGCGGACCTTCCCGGCGCCGGAGAAGGTGAGCTGTGAGGGCGGGGCTATGGCAGCCGCCACCCAACGGCCGCCTGTGGTGGTGGCGTGCGAGTACCCCAACAGCGAGACATATCCGGTATGCGCGTTTCAGCGAAAGTACTTCAAAACAGGCCCTCCGCCCGGTAACATCCCAGCTCAGCAAGC # Right flank : CTCGGTTCCCGGTCCGGGTGAAGACCGATGAGCTGTTCCCTGCACGCGGGGAGCAGGGACGGGCTGATGTTGGCGTTTTCCCACCGTGCGAGGATCGGCTCGCTACGGTTTGTCCGGAGAGTCGGCGTGCTGCGTAAGGCCACCTCTGGCATGTTCCTCCCCTCGCGGTTGCTGCGGGGTGGCCTGGGGTGTGTGCCAGGTCGGTCTCAGGAATCTGCTTGAGGTCGGCCGCTCCGTTGTGACGTGTCGTTGGGTGGGATCCGGGGGGATCTGTTGGATTTGGGTTCGGGGCCCTGGGGTGTGGGGCTTAGTGCTGCCGCTCGGGCCGTCTGGGCGAAGCATGACCGGAAGACGGAGAAGTGGTTGCCGCTGTGGCGGCACATGGCCGACTCCGCAGCTGTGGCCGGTCGGCTTTGGGACGAGTGGGTTCCACGGCATCTGCGGGATCTTGTTGCCTCCGATCTGCCGGGTGGTGAGCAGGATGGAAGGGTGTTGGTGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 15023-15843 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVX01000043.1 Streptomyces subrutilus strain JCM 4834 sequence043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15023 29 100.0 32 ............................. TACCTTGCTACCTGTTTCTAGGGCAGGCCCGA 15084 29 100.0 32 ............................. GCCTCATCACCGGCGGCCAGTGGGCGGGCGAC 15145 29 100.0 32 ............................. GGCATCCGCACGAAGTGGCGCAGGGTCGACGT 15206 29 96.6 32 ............................T AGCGGGTTGTCCCCAGAATCGGGACCCGAAAT 15267 29 100.0 32 ............................. ACCCTCCGACTGCCGCGGCCCGGTCCCCTCAG 15328 29 100.0 32 ............................. GATCTTGCCCTGAATCGCCCTGGTATGCGAGC 15389 29 100.0 32 ............................. ATAGCTGGTGGTCTCCTCGTAGGGTGGGGTGC 15450 29 100.0 32 ............................. CACCGTGCTGGACACGCCGTACTGCGAACCGA 15511 29 93.1 32 ..................A......T... TGGGGGGATCCAGTGAGTACACCTTCGTTCGA 15572 29 96.6 32 .........................T... ATTTCCGCGTCCGCCGACAGCAGGTTCCCGGC 15633 29 96.6 32 .........................T... TCGGCGCCGGACTGGGCGTAGCGGACCGACTC 15694 29 89.7 32 .....A..........G........T... GGGTCGACGCCGCGTACGGGCAACGTGCGGCT 15755 29 93.1 33 ...T.....................T... TTCGCGAGGGGCCCGAACGAGGACGGGTCCATG 15817 27 89.7 0 ............--...........T... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.8 32 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : CGCGTGCGCGGGGAGCAGTTCCGCGGCGATGCGTGCGCGGGCCGCGGTGGGGGACCATCCCCGCGTGCGCGGGGAGCAGGCTTGCTGAGCTGGGATGTTACCGGGCGGAGGGCCTGTTTTGAAGTACTTTCGCTGAAACGCGCATACCGGATATGTCTCGCTGTTGGGGTACTCGCACGCCACCACCACAGGCGGCCGTTGGGTGGCGGCTGCCATAGCCCCGCCCTCACAGCTCACCTTCTCCGGCGCCGGGAAGGTCCGCTCTGCTGGAAAGCACTCCATTTGAACCCGAGACGCCGAGGCGGACATCGCCGGCGTCGCACTCGGGTGTCGAGAGTGGGGTTGCGATGACTACTCCCATACGACCGCCTGTGACGGAGACGTACGGGAAGAGACCGCAAGAAGAACCTGCATCTGCACCACAGATATCCGTTATGCCGGTTTCAGTGAAAGTGCTTCAGAACAGGCCCCGCGCCCTGTAACGTCCCAGCTCAGCAAGC # Right flank : CGCCTCGCCGAGGCCCATGGGTGTACGGCCGTCACGCCGGACCGTCCGGGTCACGCGGCTTGCTCTTCGCCGTGCGGACGCCGTTCTTCTTCGCGGCCTCTCGCGCTGCCCGCAGTGCGACGCGGGCCAGGTCCACACCGCTGGGCTGGTGGGTCTGGCTCATCACGCCACCTCCCCGGCGACCTCGCGGGAGCGGTGGGTGAGGCAGACGCTGCGGGTCGACAGGGCCCTTCGGGTGCAGGGCCGTTCACCGTCGCGGCCGGAGCAGCTCCCCAGCACCGACGGCGTAGCGGGAGCCGCGGGCTCAACAGCATCCAGGGCATTGGCCTCTTGGCGGCAGAGCTTGCACAGGCCGGTGTCGACGGCCCAGCCGGTCAGGAAGATCACGCATCCACAGCCGCCGCACGAGGCCCGCTGCGGGCCTTCGGGCTCCCGAGGCGCCGGAACCCGTGCCGGGCGCCGGATGGCGGTCTCCAGCTCGCAGTCGGTGCAGTGGCCGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //