Array 1 68371-69805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXAY01000014.1 Ralstonia solanacearum strain CIP120 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68371 29 100.0 32 ............................. CTGGCGGAGACGTTGAAAGTGCTGATCAGCCT 68432 29 100.0 33 ............................. CCACGATGCATCGCATCGCGCGCGGTCTGCGTC 68494 29 100.0 33 ............................. GCGAAAACCGGCACGTGTACCGCTGGCGCGTCC 68556 29 100.0 33 ............................. TGGGTCAGGCGGAACTGCTCCCATTCCGGCGTG 68618 29 100.0 32 ............................. CCCGCGCTGGGCGGGCTCTCTGGTGATTTGAA 68679 29 100.0 32 ............................. CGTCTGCAGGTTCTCCATTGAGTTATCACTGC 68740 29 100.0 32 ............................. ACAGCGACACCGATCGCTTCCGCATGGCAGTC 68801 29 100.0 32 ............................. GCGGCGGCGTTGGCGGCGACTGGCGGGAAATG 68862 29 100.0 32 ............................. ATGGCGATGAACGCTCTGCGATATGCGCAGAC 68923 29 100.0 32 ............................. GCGCCGGCGTGATTGTGCTGCACGACGCGAAG 68984 29 100.0 32 ............................. CTACGTGGCGAGTGTCGGCTCGCTGCCCTGGA 69045 29 100.0 32 ............................. GCTTGCACACCGCTAGACGGCTACATGAAGTT 69106 29 100.0 32 ............................. ACGCCGCTTCCTCTGTCTTGCGTCGATGCCAG 69167 29 96.6 32 ............................A CCACCGGCAACTCGCTGACCGCCTACGCGGCC 69228 29 100.0 33 ............................. CGTCGCTGAGCTGCAAAAGGGATTGGGGATTGC 69290 29 100.0 32 ............................. TTTGAGGAGGCATTCAAGCTGGGCGTGGCGGA 69351 29 100.0 32 ............................. GCGGCCGCCCACAGCGCGACCCATTCGAGACG 69412 29 96.6 32 .....T....................... TCAGTCTGCCGCGCATCCCCTTCGTGCCGTTC 69473 29 100.0 32 ............................. CCTGGGCGGCCACCTGGGGCATTCGCCAGTTT 69534 29 100.0 32 ............................. GTGGTGCTAATCGAGCCCGCCGAGGACATCGC 69595 29 100.0 32 ............................. AGAGGGGGTGTTTGCCTGTGGCGCAGGGTGGA 69656 29 89.7 32 ..........................TTA CCTCGGCCCAGCCCACCTCGGAGCGCACGAAC 69717 29 100.0 32 ............................. CAACAGCTAGACGGCGCCAGCGGCACCGTTAC 69778 28 86.2 0 .A......T.-A................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.7 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GCTGCATCAACAACTCACCGTTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGTTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACGGATTAATGCCTTCAACTATCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGTCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATACAGGAAGGTACCAGTCAGCTTTATCATCTCCTTGTCTTTCACGCATTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTACACGATCTTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79240-80611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXAY01000014.1 Ralstonia solanacearum strain CIP120 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79240 29 100.0 32 ............................. TTCGCCTCCGGCGCTCTTCGCCCACTCGAGTT 79301 29 100.0 32 ............................. CTCACGGTCAAGAGGTGAGCCGCTCGGCCACA 79362 29 100.0 32 ............................. ATTTGGATGTGGCCGCCTTCCGCCTCGCCCAC 79423 29 100.0 32 ............................. AAAATGGAGAACGCAGTGGAAACGCTGACGAC 79484 29 100.0 32 ............................. ATGCGTGCCCTGCTGCGTCCAACACTCACAAC 79545 29 100.0 32 ............................. CCTTGGCCATTGCGGGATTCACCATCACTTTG 79606 29 100.0 32 ............................. TTCGGCGAGCGTAGACGCAGCCGCAAATGCGT 79667 29 100.0 32 ............................. CGTCGACCACCACCTCGCCGCGCGTGCCGGCG 79728 29 100.0 32 ............................. CCGATGTCGGCATCCAGCAGATGGGCGTGATC 79789 29 100.0 32 ............................. GCTCATCGCCTCCCCAGGCTTCGCGTTGTGCA 79850 29 100.0 32 ............................. TTTGCGAGGTCATCGTCAGCGACGACACGTTC 79911 29 100.0 32 ............................. AAGCTGCTCGCTCTCGGCGCCGCCGTGTGCGC 79972 29 100.0 32 ............................. GCAGTGCACATCGGCTGCTGGCGGCTGGTGCA 80033 29 100.0 32 ............................. TCGCCCCCGCCACGCAGAGCCAGCATGCGGTG 80094 29 100.0 32 ............................. GATCCCGCGGCGCGCGGATTGAGGCCAAGATC 80155 29 100.0 32 ............................. CGACACGAACAAGTCAGCCGACGGCGCGCTGA 80216 29 100.0 32 ............................. CCAGATGGGTGCCGCGCAGCTTCATCGCCAAC 80277 29 100.0 32 ............................. CCGCGCTGATAGCAGACGGCCCGAGACATGCC 80338 29 100.0 32 ............................. CGTGGCGCCTTTCACGCCACTGGCCTTTTCCA 80399 29 100.0 32 ............................. ATGTCATCCATCAGGCCGCCTCTTTCGCTTCG 80460 29 100.0 32 ............................. ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 80521 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 80582 29 86.2 0 ...........A.A..........CT... | C [80587] ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.5 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCTATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGGCGCAGCGCGTCCGGGCCGCTGGCGGCGACGCGACGTCGCCGCAGGGCTGGATCAGTCCGCCAGCGCAGCGCGCGCAGCGCCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //