Array 1 104518-104883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRY010000001.1 Listeria seeligeri strain FSL L7-1363 NODE_1_length_442813_cov_48.649468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104518 36 100.0 30 .................................... TATTAGCGGTGGAAGAGGTTGACCGTGGGG 104584 36 100.0 30 .................................... AGTTGCGACTTCTTAAAGGTGAACCGTTGC 104650 36 100.0 30 .................................... TTCAGGATGTAATTGGTGCGCTTGAAATTC 104716 36 100.0 29 .................................... TAGTTGATGTTCTCACTATTGATGATAAT 104781 36 100.0 30 .................................... AGGATAAGCAGTTGCCGTACGAATTTAGTA 104847 36 80.6 0 A..........................A..AA.GTG | T [104858] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.8 30 GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Left flank : GCAACAATGGTGTAAATAAAACATTAAAAAGCATTTGCAGTCGTCTTAACATCCAGCCAATAACCTGACACGTCTTACGCCACACTCATGGTTCTGTTCTTTTGTATCATGGTTTGAAAATCAAATATATTTCAAGAAGGTTAGGACATTCAGACATAGTTACTACACGTCAAATCTATTCTCATGTTTTAGACGAATTAGAACAAATGCAAAATAGAAAAGTTAATCCCATTATGGAAAGATTATTTTAGGTGTTGTGCAACCATTTGTGCAATCTTTTTTATAAACATACCTTTTTTAACACTTTCTCAAATAGAAAAAAAGAACTATAAACGGCTACACAAAGCGTTTTATAGTTCTTTTATCTTTTTCTTTATCCTTCTATTAACGTCCTTTGCGAACGTCCTTTTCTTTTAATTTCCATTTCATCTTCATCTAAAGTTTCCTCTCTAATATCGACGAATTTTTAATAGCCACTAATATAGTTATCCACATCTGGT # Right flank : GCTTTAAAAGAATTACTTCATCGTTAATAGTGTTTCTACCAGTTGACAGTATTCATTAGAAACTTGATTTGAAGAAACAGTACTTTTTTCACCTAAGTGGTGTATTTTTTTAGGGTGGAGTTTATCAATTTTCAAATGATGATTGTTTTGATATAGCGGTTTAAATGTCACTTCCATTCCATGAGAGTTTAAAATTTCTTTCAAAGATTTAGACACCGCATTCTTTAGTTTGCGATCATAGGAAAGTACATCCCGAGCATCGTCAAATAATTCTAAAATAGATTTCCTTAGCTGTCCGTTAAGGTAATTAAAATGTGAAATGTTATTTCGTTTTTCTTTCAATCGGTTATCAAAAAGTTCTAAGTACTCTAAGGTTAATCGTAATTGCTTAAGATCAACTTTTAACTGGGGATCATTTTTTGATGATACTTTTATAGAGGCATTTTTTAGATTATACAATTCGTAGTCGTTATATTTATATTTATTTTTATTTTCACTTA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 108251-109209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRY010000001.1 Listeria seeligeri strain FSL L7-1363 NODE_1_length_442813_cov_48.649468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 108251 36 100.0 30 .................................... TCGGACACAACACAAAAAGCGAATGCCGTA 108317 36 100.0 30 .................................... AATGATTCTAACGCAAAAAGTAACAGCAAT 108383 36 100.0 30 .................................... GCACGAGCATGGTTGGACGGATACGAGGTA 108449 36 100.0 30 .................................... GATTCTCCGGATATTGGAAGATGACTTAGG 108515 36 100.0 30 .................................... TTATTCAAAAGTACTTAAAATTTAAAGGGG 108581 36 100.0 30 .................................... CCAATTTCGCTTAAAATATTATGTGCTCCT 108647 36 100.0 30 .................................... AAAATGGTGATAGGAGCAGTTGTGTGGGGA 108713 36 100.0 30 .................................... CGGAAATTGACCAATCAATCGAATCACAGT 108779 36 100.0 30 .................................... TGTTTTATGCAAGTGATCATTTAAATATCG 108845 36 100.0 30 .................................... ATATGCTATCAAAGGCGCATTTGAAGCGAC 108911 36 100.0 30 .................................... AGTTGAACTAAGTATTAAAGCGACTATTGA 108977 36 100.0 30 .................................... AGCTAGACCTTGCTATGATTGACAAGACAG 109043 36 100.0 30 .................................... GGTACAGAACTTCAAAGATCGCAACAAGTG 109109 36 97.2 30 ..................T................. AAATGCGTTAATCGGAACAGTAACAACGGA 109175 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.7 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : AAATGTCCCTTTCTGTTTTTTTAAGCTTTCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTCAGGACTATTTTCAGGGAAATAATATAAACTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAACTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACACTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTCCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TTCCTACTTAATAATAGTAATTAAAACAACAAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGAGAATGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGATAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGATTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTTGACCATGCTCGCACAGTTACTTGACACTTTTCATCTTCTAAGAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACCTTAACTACATTTTTAGAATCACTTGTTATTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 72404-70117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRY010000003.1 Listeria seeligeri strain FSL L7-1363 NODE_3_length_310284_cov_66.449497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 72403 29 100.0 36 ............................. CCTTGTAGAGCTGGTAATGTTACCCCTTTGTCCATC 72338 29 100.0 36 ............................. TCGTTTGCTGGCGGTTTGACAACTCTGCATGAGCGC 72273 29 100.0 35 ............................. GTCAAAGTGCTATACTGGTAACCGTTTTGACATGT 72209 29 100.0 34 ............................. TTACTATATACATAGTATAATACGAATATTCGTA 72146 29 100.0 35 ............................. ATTTATTCTCATTGTTTCTCACCTCCTTCCTTGTT 72082 29 100.0 34 ............................. TTTCACTGTCGTTGCCCAAGCGGTTAATAATACC 72019 29 100.0 34 ............................. ACATCTGATTTGACATGCCGAATTTAGCTTTTTG 71956 29 100.0 37 ............................. ATCCATGTGGTTGATTGTTTGCAATCTTAAGTCCATC 71890 29 100.0 36 ............................. GTTACATGATGAAGCTGAGACAATGGAAGAGTATTG 71825 29 100.0 34 ............................. ATTTTCATCATCCCATCTGTTTTTGACATAAAAA 71762 29 100.0 35 ............................. ACAATTGCCAATTGCAAAACTCCTTTTAATATGTA 71698 29 100.0 36 ............................. ATTCCTACGAGAATAATGTATACTAGCGCGGTAAAC 71633 29 100.0 34 ............................. CATGCCGTACTCGTCAAGCATGCTGTTTGTATAC 71570 29 100.0 37 ............................. AATGAAATATACTTTCCGACTTCATCGCGCATAAGTC 71504 29 100.0 36 ............................. TTCTTCATCCCCATATACAACCATCTCTAACCCGTC 71439 29 100.0 36 ............................. ATGACCGCATTATCGTTGACAGAGACAAATGGAAGT 71374 29 100.0 36 ............................. ATAAAAATGGCATACAATAAAATTCTCGTACGGTAT 71309 29 100.0 34 ............................. TCCCACCAGACATCATTTTTTTAGATTCGCTATG 71246 29 100.0 36 ............................. TAAAATTACTAAGGGCGACCAGGCAGTTAGTAAGTA 71181 29 100.0 34 ............................. TTCTCATTTCGTTATATTCTGCTTCAACTTCTTC 71118 29 100.0 38 ............................. TTTACCTCGATTTCCAACTTTGTATCAAACGGAATATC 71051 29 100.0 34 ............................. ACACTGCCTTCAATTGTTGTACCGTCCAAAATCG 70988 29 100.0 35 ............................. ACAGTAAAAGGAATTGCAGAAAAATTCGGAGGTTT 70924 29 100.0 35 ............................. TGTCGAGTTGTTGCAAGGCATCTAGACTATCAATT 70860 29 100.0 37 ............................. CGAGAATCTTAGTTGTCGTGTTTGCGTATTGTTATCT 70794 29 100.0 35 ............................. GTTTCTGGGAAATATTCATCTAAGCCACCAGCGAG 70730 29 100.0 34 ............................. AAATTATAACTTTGTAATGCTAAATTTATATCTC 70667 29 100.0 36 ............................. CAGGTATAAATAGTAAGTTAGAGCTTACTAAAACCG 70602 29 100.0 36 ............................. AATAAAAAAACAGGTTTATTAGAACAAACGGATGAA 70537 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 70471 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 70404 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 70340 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 70275 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 70210 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 70145 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 98.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGGTATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 83633-82180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRY010000003.1 Listeria seeligeri strain FSL L7-1363 NODE_3_length_310284_cov_66.449497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 83632 29 100.0 35 ............................. ATATCTGGACAAGCGCAAAGAATATATACCGCTGC 83568 29 100.0 36 ............................. TCAACTAGCGAGGTAACTAAAGTAAGTGCTGCGTCT 83503 29 100.0 35 ............................. GAAATCACCTTGTCAAACACCAAAAAAACGGCAAC 83439 29 100.0 36 ............................. ATCTAAATGATCTTGACTGAAAAAAAATACCCTTCA 83374 29 100.0 36 ............................. TGACGAAATCTAGTGCCTGTCCTACCAGGTGATAAG 83309 29 100.0 37 ............................. ATCAACCTACTGTGGCGAAAATGAGACTTGCATCACG 83243 29 100.0 35 ............................. AGGTCGATGCCGAGCTTTGTAACAATGCCGAAGCG 83179 29 100.0 36 ............................. GATGATATATGAAAGCGACATACTCGCGGTCTTGCC 83114 29 100.0 35 ............................. ATGTTAGAATCTGTATTACTTAAAAGTTTAAGGCA 83050 29 100.0 37 ............................. CGATTTGATTTGATTTTGAGAAGTCGACACGAACATG 82984 29 100.0 35 ............................. AAAGCCGAGTAGGCTTATTTTTATGCAAAAAAATA 82920 29 100.0 36 ............................. TTCGGTGTCATCATGATGTCGAAACGCAAGGCTTTG 82855 29 100.0 37 ............................. ATGCTTTCCCGGCTTCAACTGTTTTCTTTCCAACCCA 82789 29 100.0 34 ............................. TCCCCTGTTTGTAACTTTAAAAATCCGGGATGAG 82726 29 100.0 37 ............................. TAGGCATCACCCCCTAAATGGGATTTAGCCACCATCT 82660 29 100.0 39 ............................. ATAAAAATAAATAATTTTGCTAATGCGCGCTTGGTTTCA 82592 29 100.0 35 ............................. CTGTGTAGCTTCTTAAGAACAGTAGCCATGTGAGA 82528 29 100.0 34 ............................. ACTTTTTAGGTTGCTCAACTAAATAATTAATTAA 82465 29 100.0 34 ............................. AGATTAAGTAGTTCCTGTATATGTTCTTTTGAAT 82402 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 82338 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 82273 29 93.1 35 ........................C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 82209 29 86.2 0 ........C....C..A...........G | T [82182] ========== ====== ====== ====== ============================= ======================================= ================== 23 29 99.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACAGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATAGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 90527-89854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRY010000003.1 Listeria seeligeri strain FSL L7-1363 NODE_3_length_310284_cov_66.449497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 90526 29 100.0 35 ............................. AAAAAAATATTGTCCTCGGAAATGTGATATAGTTC 90462 29 100.0 36 ............................. ACTAAAGAGTGACCCTTTGGTCTTAGTTGCTTTATC 90397 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 90331 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 90268 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 90204 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 90140 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 90074 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 90011 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 89947 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 89882 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGAACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //