Array 1 134219-135928 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRDE01000004.1 Aggregatibacter actinomycetemcomitans strain HK_1002 NODE_4_length_136677_cov_48.0476, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134219 28 100.0 32 ............................ CCTAAATTCGCTTATGACGACGGAGTGAGAAC 134279 28 100.0 32 ............................ TTTTTAAAATTGTTGATAATCCGTTCAACATA 134339 28 100.0 32 ............................ ATACCCCTTAAAAAAATTATTCCTTATTCTTC 134399 28 100.0 33 ............................ CAACAAAAGAACAATTAGACAATGCTTATCAAC 134460 28 100.0 32 ............................ TGCATTAGAAAATAATAAATACAAGATAAGCA 134520 28 100.0 32 ............................ AATAAAGGACGTTAAAGATGTTTAATAAACTT 134580 28 100.0 32 ............................ TAAACCCGCGTCATTACTAGATTTATGCCGTT 134640 28 100.0 32 ............................ TATATGCGCGTTTAATTTGTTATTTTTAATCC 134700 28 100.0 32 ............................ TTGCTTGCGACGTTTTCTATCCCAATATTTTA 134760 28 100.0 32 ............................ TTATATCAATCGTATAAAAAATGAACAAAATA 134820 28 100.0 32 ............................ ACGATACAAACTTAAGCCCAATTTCCTATAAT 134880 28 100.0 32 ............................ TAACATTTCATAGAGATTCAAGAAACGTTGTT 134940 28 100.0 32 ............................ AATCACAACCCGTTTTTGAATCAATCAAAAAT 135000 28 100.0 32 ............................ TTCTTCCACCAGTATTTGAACAATACCTTTTA 135060 28 100.0 32 ............................ TTTGAATGTTGGCAAGCTATATTATGAATTTG 135120 28 100.0 32 ............................ TAATATACGCAGTACCATTACGTAAGGCTTCT 135180 28 100.0 32 ............................ TTTGCTGAGGTGCTTTTTCTTTTTCAGTTTCC 135240 28 100.0 32 ............................ ATGTGCGCCCCGCTGGTTCATCCCGATACTGC 135300 28 100.0 32 ............................ AAACTATGCTTATGATGACGGTATTTTTACTT 135360 28 100.0 32 ............................ TTCAAAATTGGTTAGTCAACAAGGTGTAAAAG 135420 28 100.0 33 ............................ CAGAAATTGTAAATTGAATTTTTAAGAGTGAAC 135481 28 100.0 32 ............................ TGTGGATAACTATTCAACATTTTCGATCTAAA 135541 28 100.0 32 ............................ AACTTTTATTTATTTCGATGTCATTTTTCATC 135601 28 100.0 32 ............................ TAACAACAAACACACAACTTACTCACAATGCC 135661 28 100.0 32 ............................ TGTGGGCAAGCTACCCTATTGCTTAACCCCAA 135721 28 100.0 32 ............................ AAAATTTATGGCTGCAAATGTGTTAAATTTGA 135781 28 100.0 32 ............................ TATGTTGCGTAATGATATACGTAATTTTTTCG 135841 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 135901 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGAGAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAAGCTACCGCGATTTATCCCTCGAGAAGCAAAGTACCAAGCCATCACGACGTTAAAATCGCGCGGAATCAAACGACTTTGTGCGCTGTTTGAGGTGTCTGAAAGTGCGTATTATGCCCAATGTAAAGCGGTAAAAACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 34405-34773 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRDE01000007.1 Aggregatibacter actinomycetemcomitans strain HK_1002 NODE_7_length_72826_cov_49.8831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 34405 33 100.0 35 ................................. CATGTTGTCGGCACCGGCTTTGATTTCCGCATAGC 34473 33 100.0 34 ................................. AGAAAAAAGTGACACCACCCCGGAACAACAAAAT 34540 33 97.0 34 ................................T GTTCGCCTAGCTGATATGCGCAATTTAAAAAAAG 34607 33 97.0 35 ................................T ATCAAGGCAATGGGGTTGTTGACAGCAGCTACTAA 34675 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 34741 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 96.0 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : AGGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //