Array 1 161619-160692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXKV010000012.1 Salmonella enterica strain LSP 237/15 NODE_31_length_681218_cov_20.893673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 161618 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161557 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161496 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161435 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161373 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161270 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161209 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161148 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161087 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161026 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160965 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160904 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160843 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160782 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160721 29 96.6 0 A............................ | A [160694] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179243-177750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXKV010000012.1 Salmonella enterica strain LSP 237/15 NODE_31_length_681218_cov_20.893673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179242 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179181 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179120 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179059 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 178998 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 178937 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 178876 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 178815 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 178754 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 178693 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 178632 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 178571 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 178510 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 178449 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178388 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178327 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178265 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178204 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178143 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178082 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178021 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 177960 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 177899 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 177838 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 177777 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //