Array 1 1164892-1164476 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MKNI01000007.1 Listeria monocytogenes strain NRRL B-33364 PROKKA_contig000007, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
   1164891	    29	  96.6	    34	.G...........................	TCTGAAATTTTAATCATGGATACAGATGATGTAA    	
   1164828	    29	  93.1	    35	AG...........................	CACGGTGTCTACAATGAACATCTGTCAAAAGACTG   	
   1164764	    29	  93.1	    35	CG...........................	ATGTTTGTCGTACCTAACCATCTGATGGATCAATG   	
   1164700	    29	 100.0	    38	.............................	TAGGCAGCGTCAGCAATAGTGGTGAAAACAGGTTCTAC	
   1164633	    29	 100.0	    36	.............................	TCGACATAACACATATATTTAAAATCATTAAAACTA  	
   1164568	    29	  96.6	    35	..............T..............	GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT   	
   1164504	    29	  75.9	     0	A.....A.......TCA.A....A.....	|                                     	
==========	======	======	======	=============================	======================================	==================
         7	    29	  93.6	    36	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                      	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGAAGTTTGGTGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTCGATGTTTTTTGGTAGGTCGACAGAAATACCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCG
# Right flank :  CTCCTCCATACACAACTCCACCATCCATCAAAATAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTAG

# Questionable array : NO	 Score: 5.50
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:81.48%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//