Array 1 108002-106104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZE010000002.1 Salmonella enterica strain FUA10108 NODE_2_length_415858_cov_24.908822, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108001 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 107940 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 107879 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 107818 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 107756 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 107695 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 107634 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 107573 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 107512 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 107451 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 107390 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 107329 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 107268 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 107207 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 107146 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 107085 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 107024 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 106963 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 106902 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 106841 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 106783 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 106722 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 106661 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 106600 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 106539 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 106478 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106417 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106356 29 100.0 11 ............................. CGGCCAGCCAT Deletion [106317] 106316 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 106255 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106194 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106133 29 93.1 0 A...........T................ | A [106106] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125900-124284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZE010000002.1 Salmonella enterica strain FUA10108 NODE_2_length_415858_cov_24.908822, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125899 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 125837 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 125776 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 125715 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 125654 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 125593 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 125532 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 125471 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 125410 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 125349 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 125288 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 125227 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 125166 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 125105 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 125044 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 124983 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 124922 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 124861 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 124799 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 124738 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 124677 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 124616 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 124555 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 124494 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 124433 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 124372 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 124311 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //