Array 1 121430-120382 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLO01000091.1 Pseudomonas aeruginosa isolate 196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 121429 28 100.0 32 ............................ TTCGGTTGCATCAGCCGCGTGCGCCGGTTCGA 121369 28 100.0 32 ............................ TGAATGGGGATGCTAACAGCCAGTATCATACC 121309 28 100.0 32 ............................ CTGAATGGTACGAATACACTGTTACCCTGAAT 121249 28 100.0 32 ............................ ATCGAACCGCGGCGACCGTAGGCCATCGATCG 121189 28 100.0 32 ............................ CTCGCCGGGGGGCAGGGATGCAGGGGGTAAAT 121129 28 100.0 32 ............................ GTCTGTTCGTCTCCGAGCAAAGCGCAAACGTG 121069 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 121009 28 96.4 32 ..C......................... TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 120949 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 120889 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 120829 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 120769 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 120709 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 120649 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 120589 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 120529 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 120469 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 120409 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-858 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLO01000042.1 Pseudomonas aeruginosa isolate 196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 32 ............................ TTCCACGCGGGTGACTATGCGCTTACTGGCCA 110 28 100.0 32 ............................ GCCTGATCGACGCCAACGACCTGCCCGAGTAT 170 28 100.0 32 ............................ TTTCCCTGACGAGGCCGACCGATTCGGCTGGC 230 28 100.0 32 ............................ GCCCCAGATCAGCGTTGCGCCGCACGCGATGA 290 28 100.0 33 ............................ TTCGACACTGCTAGAGCAATGTCCGGGCATCCC 351 28 100.0 32 ............................ ACTCAGAAACCGGAGCGAAACCCATTGGACTC 411 28 100.0 32 ............................ TGTATATGCCCGTGATAGTAGCGGGTCCAAAG 471 28 100.0 32 ............................ CTGATCCGGGCGACGGTGGAGACGGTGGGGAT 531 28 100.0 32 ............................ TGGCACTCTGATCAGCGCGCAGCTCGAACTGG 591 28 100.0 32 ............................ GTATCCGCCCGGCCAATTCCGCATCAACGGTA 651 28 100.0 32 ............................ GCGACTGGGACGTTGTGCTGCTGCAACTGACC 711 28 96.4 32 ..................C......... AGAAAAAGCCCAGCCTTCGAGCTGGGCTTTTT 771 28 100.0 32 ............................ TCGAAGGGGGGAAAAATCCGCGAATGAGAGGG 831 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10312-9384 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLO01000042.1 Pseudomonas aeruginosa isolate 196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10311 28 100.0 32 ............................ TACTGGAGGTGTCGGAGTTCGAGCCGAGCCAG 10251 28 100.0 32 ............................ TGATCGGAGCCCTCATTGCACACGCTCCAGCC 10191 28 100.0 33 ............................ AACCAGGGCGGATAAAATCTGCCCTTCTGGATT 10130 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 10070 28 100.0 32 ............................ AGCTCGGCCAGCGCAGCCCGGCGCGCTTCGCC 10010 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 9950 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 9890 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 9830 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 9770 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 9710 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 9650 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 9590 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 9529 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9470 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 9411 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //