Array 1 255-1840 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQR01000021.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP28 x_contig000021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 255 29 100.0 36 ............................. CCAAGCGGATTTAGAAAATGTTTTTAGACAAAAAGC 320 29 100.0 37 ............................. CCCACGTAGCAAATGAAAGAATGGCTAGTGTAGTTTA 386 29 100.0 37 ............................. CGCAACAACAAGATATTTGATGAATTTTTTGAGCGTG 452 29 100.0 36 ............................. CAAATCCTACCCCAAGCACTGATGAGAATGTGCAAA 517 29 100.0 35 ............................. CCTGATATCAATGACAACCAAACAATAAGCGAAGG 581 29 100.0 35 ............................. CAAACTCTTATATTTCCAAAATCTTTATTCTCAAA 645 29 100.0 36 ............................. CACACCAGTTTTAGCTGAGATGGCATCAGTTAATGT 710 29 100.0 38 ............................. CATCCAGCTCTCAGCCCAAGCTATTTGTGCTTGTGATT 777 29 96.6 35 .C........................... CTCAAATATTTTTGGCAATGAAATAGATTTATCAT 841 29 100.0 36 ............................. CCAAATTGAGCTAAAAGCACCAAAAACACAGTTTAA 906 29 100.0 35 ............................. CTTGATGATGTTGAACTTATGCAATACATAGGATT 970 29 100.0 38 ............................. CTGCTTAATGATTTTTTAGCTCTTTTTAACTCGATAAA 1037 29 100.0 34 ............................. CTAAATTAGTGCTTAGATTTTCATTATTTAGCCT 1100 29 100.0 35 ............................. CACCACGACATCCAGCCATATTACATCCTTTCTAT 1164 29 100.0 34 ............................. CAGCGTAAATCGTCTCATTGCTTTTTGGTGTGAA 1227 29 100.0 37 ............................. CCCTCAAGTAGATACGCAAAGTGACCTTTGCCATCAG 1293 29 100.0 36 ............................. CTGATAGTTTTCAAGCTCTAGGATCGGATTTATTGC 1358 29 100.0 37 ............................. TCGTCGTTCGCTTGTCGTACCTTGGCGAATCGAGCTA 1424 29 100.0 35 ............................. TAAGTAGAAGGCTAATAGCTTGCTGGCCTTATGTG 1488 29 100.0 38 ............................. TTACACAAAGTAGATGATGAAAACTACCAAAACACCTA 1555 29 100.0 34 ............................. TGCATAACTTTTACTTCTGTTCCACCATTAGCCT 1618 29 100.0 35 ............................. TCCAGATTTATTTCCAAGCTCTATTTGCAAAGCAG 1682 29 100.0 37 ............................. TAAAGTGCACTTAGCACAAACTACAGTACAGGCATTT 1748 29 100.0 35 ............................. CAATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 1812 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.9 36 GTTTCAAATCCTAAAAGGATAAATTTATA # Left flank : GCATTTCATCACTACTAACAAATACAAGCTCAATCTCTGCTTTAGTAAGCTCATCGCATATATCATCTAAAATACTAGGGTAATTTGTATCACAAAGTATCAAATTTAGTCCTTGGTGTGAATTAAATCAATCGGCTTTTTTGCAATTATTATTTGCTTATTTTATATAAAATCAAAGATTTTAAAGCACTATTAAAACCGATTAAATTTAGCTATAAAAATTATGGTAAAACTATACGCAAAATATAGCCCTAG # Right flank : CGAGAGTTCATAGATATGACTTTCAGAGAGTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1-491 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQR01000024.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP28 x_contig000024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 30 100.0 34 .............................. AATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 65 30 100.0 37 .............................. GAGAGTTCATAGATATGACTTTCAGAGAGTATGATAA 132 30 100.0 38 .............................. CCTAAGCACTCTTCCTAAAATATCTTTTAAAGAGTTTT 200 30 100.0 38 .............................. GGAGTTGGGTGTTTTGGCTTTCAAAGCATTAGCTTATT 268 30 100.0 34 .............................. TTGAAACGGTTTTGTAGCTCTGATAGTCTTCAAA 332 30 100.0 34 .............................. CTTCTCTTTTTGCCCTTGCGTCTTCTAAAGCCTT 396 30 100.0 36 .............................. GTTTTCTTTGAGTAGGAAGTTTATCTACTATCATCA 462 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : | # Right flank : CAGCAACAAAAACAGCTAAATTTAGTATTTTGTACCAAGTTTTACGATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTAGGCAAAAGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACACTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 8307-10691 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQR01000014.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP28 x_contig000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8307 30 100.0 34 .............................. ATCTTATTTTTATCCTTTTTATTCAAATTCTTTA 8371 30 100.0 34 .............................. CCATTATTATAATTATGTGATATCTCTTTGTACT 8435 30 100.0 35 .............................. TCAAGAATGGACAACTTGGAGCTTAGAAAACTTCA 8500 30 100.0 37 .............................. AGAGACGATGAAGACTATAAGACAAATAGAGATTATC 8567 30 96.7 35 ........C..................... CTTTGCTTCAATAGACAGCTCATCCCTAATATCAG 8632 30 100.0 34 .............................. ATATAGCAAATGATATTAAATCAAAATGTACAAA 8696 30 100.0 36 .............................. AGGATCGTCTTCATCTTGCTCTTCTAATGCTTCTTC 8762 30 96.7 35 A............................. CATATAGAGTTTTCTAAAAGTTGTTTAAAAAACAG 8827 30 100.0 33 .............................. CTTTTGGTCTTACAACTATCGCACCCATTGCCA 8890 30 100.0 35 .............................. ATCACTTAGGTTTAGTCCGGTTTGAAGAGTAGCTA 8955 30 100.0 36 .............................. TTTGTTCCTTTGGAATAAAATCAATTAAAGTCTTCA 9021 30 100.0 36 .............................. CAAGCCCCTCATTATTGCCCTTATATTCGCCTTTTT 9087 30 100.0 33 .............................. CGTAGCCGTATTTTTCATGAGCAACGCTAGGGA 9150 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAGAA 9216 30 100.0 36 .............................. ACAATGAAGACGAAGTTAAAAACTTCGTAGAAATGG 9282 30 100.0 37 .............................. ATCAACTCGCAAAAGCTCGTTAAAATTCTCATTTTTG 9349 30 100.0 34 .............................. AAGGAATACCCTTATATACAGTCTTTTTATAGAC 9413 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAGAA 9479 30 100.0 34 .............................. TATGGGCGCTTGACGTTGCAAGGTATGGCGATGA 9543 30 100.0 35 .............................. AAAGCAATAGCAGAAGCTAGGGAAGAGTTCGCTAC 9608 30 100.0 37 .............................. TCTAAATTTTGGCAACATTCATAAGAAACTCCTTACA 9675 30 100.0 36 .............................. TTTCACGTCTTTTAACACTAGTGCCACTTTCAAACA 9741 30 100.0 35 .............................. TAAAGGTAGCCCACTGAAGGAGTGTGAGCTTAAGA 9806 30 100.0 35 .............................. TGTTATCAGCGTCTCTTGTCTCACGCAACCTTGCA 9871 30 100.0 35 .............................. ACCGCCAAGCCCAAGCATAGCACTAGCAGTAGCTA 9936 30 100.0 35 .............................. AAAAAACAACTACTAGACCACGGACAAATCAGCCG 10001 30 100.0 36 .............................. TAGCTTTAGCTATTTCTGTTTGAGTTCTAGCTTGTT 10067 30 100.0 37 .............................. AGAGACGATGAAGACTATAAGACAAATAGAGATTATC 10134 30 100.0 37 .............................. ATTATTTTGAAAAATGCTAGTCTTTGGGATAACTCAA 10201 30 100.0 38 .............................. GCTTTTTTCAAGACAGATAAAATAGCACTTGTGGATTA 10269 30 100.0 36 .............................. TGAGCTGAAAAAATACCTTTGCAAGTTTGGCAAAGA 10335 30 100.0 38 .............................. GCTTTTTTCAAGACAGATAAAATAGCACTTGTGGATTA 10403 30 100.0 36 .............................. AGAGCAAATCAAGCTGGTCGATTGGCTCAGGGTGAA 10469 30 100.0 33 .............................. TATAAATTTATCTTGCCTTTGCATCCAAATCAT 10532 30 100.0 36 .............................. GTTTTTAAGAGATGAGTTAATACAAGAAGATAAAGC 10598 30 100.0 34 .............................. AATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 10662 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 99.8 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGGCAGTTAAGTCTCATTAAAATAATAACCAAAATAAAAAGAATAAAACTAAACATCTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATCAACAAAACAGCCACTACTCTAAGTGATGCCTTAGACAAAAATATCAAAACAGCTACAACAGCGATAAAAAAACGCAAATCATAAAAA # Right flank : GAGAGTTCATAGATATGACTTTCAGAGAGTATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //