Array 1 109-1217 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHZ01000028.1 Vibrio cholerae strain N2797 NODE_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 169 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 229 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 289 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 349 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 409 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 469 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 529 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 589 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 649 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 709 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 769 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 829 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 890 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 950 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 1010 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 1070 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 1130 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 1190 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTAGATCTAACAGCTCAAGAGTTTGAGCTGTTAGAGAGTAATTGCTTAGTTCTGGCTTAACCAGATCTCAGGTAAATTAGTTTGGGATTGTCGTGTGGTGTGTCCGGTG # Right flank : GGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2564-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHZ01000030.1 Vibrio cholerae strain N2797 NODE_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2563 28 100.0 32 ............................ TCCAAACAAGAAGCCGCTAGAGCCATCACGGA 2503 28 100.0 32 ............................ AGAACCGCGCCCAGCGCCACGAGCATGAAATT 2443 28 100.0 32 ............................ TATCAGCACACGATGCGTAACAACCTGCACCA 2383 28 100.0 32 ............................ TTTTGAACTAAGTTGACGGTATTCCCATTCTG 2323 28 100.0 32 ............................ ACTGGAAGTTACCTCATCAACAACGTACTGCC 2263 28 100.0 32 ............................ AGAATCGCCCGTTTGTGTGCCAGATTCGGCCT 2203 28 100.0 32 ............................ GTACAAAATGCGTATCCTGCCAATAACTATAA 2143 28 100.0 32 ............................ TGAAAGAGTTAGCACCAGACGGAACCATGGTT 2083 28 100.0 32 ............................ TGCAAATAACGGATAAAGCCCTTAATCATGCG 2023 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 1963 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 1903 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 1843 28 100.0 32 ............................ TGTCTGCAAATTATCTTTTGCAAGCTGCAGGC 1783 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 1723 28 100.0 32 ............................ TCTTTTTGAGAATTTTTCTTATTTAACTCTTC 1663 28 100.0 32 ............................ TTGAATCGAATGTTCATTTATTGCACAAATCG 1603 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 1543 28 100.0 32 ............................ TTATCCAAGCATACGGTAGACTGCCTGAGTAA 1483 28 100.0 32 ............................ TAAAAACGCGGTCGCCATGGAATCCCCAAGCA 1423 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 1363 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 1303 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 1243 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 1183 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 1123 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 1063 28 100.0 32 ............................ AATCACCCGGATGGAATCGGCAATCGCGTCCA 1003 28 96.4 32 .C.......................... ATAAACATCCATACCCATTGATTTCGTGACAC 943 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 883 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 823 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 762 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 702 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 642 28 96.4 32 ...........T................ ATTTCCTTGATGTGCTTGATTTGATCAGCTTT 582 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 522 28 96.4 32 ...........T................ ATAATACAACAAAACTCGAGTAACTCTAGCAA 462 28 96.4 32 ...........T................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 402 28 96.4 32 ...........T................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 342 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 282 28 100.0 32 ............................ GTTGAAATACCATGCTTTTTTTGATCTCGAAT 222 28 100.0 32 ............................ TTGCTGGCTGGTTATGTGATGCCAAACATGTT 162 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 102 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATTAACCTGAACTCTGGATAAGAAACTGAGCTAACAGAGGAACTAATTGCTCGTTCCCCGATCTGATCATTCGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //