Array 1 97911-99891 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNK01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM2896::KO_STM3664 BCW_7513_1__paired__contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97911 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97972 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98033 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98094 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98155 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98216 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98277 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98338 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98399 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98460 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98521 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98582 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98643 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98704 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98765 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98826 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98887 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98948 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99009 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99070 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99131 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99192 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99253 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99314 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99376 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99437 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99498 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99559 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99620 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99681 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99742 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99803 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99864 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116024-117500 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNK01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM2896::KO_STM3664 BCW_7513_1__paired__contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116024 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116085 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116146 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116207 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116269 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116330 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116391 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116452 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116513 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116574 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116635 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116696 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116757 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116818 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116879 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116940 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117002 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117105 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117166 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117227 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117288 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117349 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117410 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117471 29 96.6 0 A............................ | A [117497] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //