Array 1 34347-30086 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEZ01000063.1 Streptococcus ruminantium strain DAT837, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 34346 36 100.0 30 .................................... TTGTCGATGGAAAGTATGGTACACACACGA 34280 36 100.0 30 .................................... TCTCGTTCGTTTAAGATTGAAAGAACATCA 34214 36 100.0 30 .................................... ATCATCAACTTCGTCATATTCAGACCCCTT 34148 36 100.0 30 .................................... TCCACTGACAGCGAGAACATAGATTGTCAT 34082 36 100.0 30 .................................... AGAGAGGGGAGTGACGAAGAATGATCAACA 34016 36 100.0 30 .................................... CATTTCTGAGTTGTTACGCTACGGAAAAGG 33950 36 100.0 30 .................................... TGTACACTGGTTTTAATACCAAGAAATACA 33884 36 100.0 30 .................................... ATAATCTACGTGGCTATAATAGTAACCTTG 33818 36 100.0 30 .................................... ATTAAATGGGAAAATCGTGTGCTACCTTAA 33752 36 100.0 30 .................................... CAACCCTACATGGACTTGGTTTGAATCACC 33686 36 100.0 30 .................................... AATTGGCTAAAATAGAAGGGGGTTAAGTAT 33620 36 100.0 30 .................................... TTGAGGTAGGCTGGAAAGCTAGACGGAACG 33554 36 100.0 30 .................................... GAAGTCTTTCTTCCTCTTGTTTTAATACCA 33488 36 100.0 30 .................................... CATTAAATTCCAACTTGATGACGGAATTGA 33422 36 100.0 30 .................................... TCAGATGTGTACTGGCGAATAGGTCTGGCA 33356 36 100.0 30 .................................... TCTTCAATGAATTAGATGAGCTATTCTTAC 33290 36 100.0 30 .................................... ATTACCAAGTCGGTACTAACAAAGGCGGCG 33224 36 100.0 30 .................................... AGCAAATTGATGACCTCTTGCTAAAAGCTG 33158 36 100.0 30 .................................... ATACCGCCCGCAATGATAAATACTGGAATC 33092 36 100.0 30 .................................... TTCTTTGAGCTATCTTGGCACATAATTTCA 33026 36 100.0 30 .................................... GCTTTAGCAAGTATGTCACTAGCTGCTAGA 32960 36 100.0 30 .................................... ACAAAGATTTCTATGATGAATGGTCTCTGG 32894 36 100.0 30 .................................... TTTGTGTGCTTTGAATCGGTTTAACCCTCT 32828 36 100.0 29 .................................... CCATCGACCAGGAAGAACGCTTCAAAGAC 32763 36 100.0 30 .................................... CAGTTGGCAAGACTGTGGTTATGAGAGCTT 32697 36 100.0 30 .................................... TCCGCATTGAAAGCAACGGTCCTGGCCGCA 32631 36 100.0 30 .................................... GTTAGTCGGTTGGTTGCGATGACATCATAG 32565 36 100.0 30 .................................... TTGCAGCATTATTTACCGGTCTCATGCGTC 32499 36 100.0 30 .................................... CTTAATGACATCTGATGGTGTCAGCATATG 32433 36 100.0 30 .................................... ATATAGTATGTATAGTAGATATACTAACTC 32367 36 100.0 30 .................................... CAAACGATGTTATCAATAGAGTTGAGAAAC 32301 36 100.0 30 .................................... CTTTTTTGTTTTTTAGAATGCGATATAATA 32235 36 100.0 30 .................................... AGTGTCTGTTAAACAAATCATAATCAAAGT 32169 36 100.0 30 .................................... TTGAAAACATAGGCATTGGGGACCTACAAC 32103 36 100.0 30 .................................... ACGAGGCAGTAGAACTTGGCTTCGCAGATG 32037 36 100.0 30 .................................... TTTCAACAGTCAACACTGCCCCAGCTGGCG 31971 36 100.0 30 .................................... TTTCAAACGGTGCTTGGTCATAAAATCTTA 31905 36 100.0 30 .................................... CCGTGACCTCTTCTGCTTTCGAGTAAAGTT 31839 36 100.0 30 .................................... TTCCTCTGTGGTCAGAAATTGAAGAGACTA 31773 36 100.0 30 .................................... ATGGTTTCAGGATATGGCGTATTTGGATTA 31707 36 100.0 30 .................................... TGGCTCTGGCACATCGACCAGTAGCACACC 31641 36 100.0 30 .................................... TTATCGCCAGCTCAGCACTGGGCATTTTAA 31575 36 100.0 30 .................................... ATTCTTTCTGACGTATTCTTCGACGATGTA 31509 36 100.0 30 .................................... CATCTTCTGTTTCCATAAAATCCATAGAGA 31443 36 100.0 30 .................................... CCATTATTAAGCGTTATGTTACCGCCAAGT 31377 36 100.0 30 .................................... ATGTTTATGAGTATCAGAGAGCGTTACAGT 31311 36 100.0 31 .................................... CCTTGTTCTATGGTTAGTGGGATGGAAACTT 31244 36 100.0 30 .................................... TCAATGTTCAGGATATTAAGACGGGGCCAA 31178 36 100.0 30 .................................... ATTGTTTCTTGATTGTGTATCCAGCTCAGC 31112 36 100.0 30 .................................... ATTATCAAGTTTGGAATATCCCATCAATCG 31046 36 100.0 30 .................................... CGTTCTCTACGAACTTCTTGACTGGCAGCA 30980 36 100.0 31 .................................... CCCCACCTCGTCTCTCATAACACGAGATGGA 30913 36 100.0 30 .................................... CAAACGATGTTATCAATAGAGTTGAGAAAC 30847 36 100.0 30 .................................... GTTCAACATTGACGGGCAAACGGTGGATAA 30781 36 100.0 30 .................................... TCCGCATTGAACACGATGGTCCGGGGCGGA 30715 36 100.0 30 .................................... AACTCTGTAGGATGGATGTCTAGTTCTAAT 30649 36 100.0 30 .................................... TAGAATCAAGTCTAAACGATTAGAGATTGT 30583 36 100.0 30 .................................... CTGGAGCAGATGGACCAAGTCACATTACAG 30517 36 100.0 30 .................................... TCAAGGAGTTAAGACAGCGACAGAGATTGT 30451 36 100.0 30 .................................... TCTCGTTTGTAAAGATATGGATTTTTGCGT 30385 36 100.0 30 .................................... TGCCTGTTTTAGGTAACTGTGCCTTGACTG 30319 36 100.0 30 .................................... CAACAGAATTAACACATACTTCAAGTATAT 30253 36 100.0 30 .................................... AAGTAGCTATTGGATTCCAGATGTTTGGAA 30187 36 100.0 30 .................................... TTTTTGCTTTGCCATGCTGAGGTTAATCAC 30121 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 65 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAACAGTTAAATGAGCAACCGGAGGTGAAATCTATCATTGAAAAACTAGCAAACTCGATTACTGAACTAATTAGCTATGAATGTTTAGAGAGTGAGTTAGATTTGGAATATGATGAGATTACAATTTTAGAATTGATAAAAGCTTTGGGGGTTAAAATTGAGACTCAGAGTGATACCCTATTTGAAAAAATTTTTGAAATATTACAGGTTTTTCGCTATCTAACAAAGAAGAGATTACTGATTTTTGTTAATAGTCTATCCTATTTCACTAATGATGAAATTAAGAAAATAGTGGAGTTTATCAATTTATCGCAGTTAAGGGTTCTATTTTTAGAACCTAGGAGAGTAATAAATCAAACTCAATATATTTTGGATGAAGACTATTTCTTACTTGTTGAAGAAGTGGTATAATCAAGTCAATGGGAACTAATTTGAAACTAAAATCTGGCTGAGATGAGCAGCGCGATTACGAAATTTCGAAAGAAAAAATTTCTACGAG # Right flank : AGAATGTTACTTGCTCAAAAGTGTTATTTAGCCAATGGATTAAAATTTAGACCTTTTTGTTTTAACTCATAGATCTAAATTTTATCATCACAACTTAACTTTATAGCTCCTCTACTTCAATCGCTAGATTTTGTTTCTGATTTATGGAGAAAGTTCAAGATTTCTAGGGTGTGAATTTGATTACCGAACTGGTAGTGAGAAAACGGAATCAATTTTTATAAGATCAGTAGATCTTTTTGTCATCTGCCAACTAATATGTGTGTATAACATTGTCTGAACATGATAGAGCAAGCAATTCATTCCTATGCTGATTGTTTCAATTGTGAGAGGAAATAAGTGTTAGGTCGGATTGCTTTTGACTAACTTATCCGGAGAAGAAAAGTTGGTTTATCTGAAAGAAATAAGATGTAAAAAGAGAGGACGGAAGGTTTTACTGAGAAAAGTATCCGATCAAGTAGAAAATCCATCTATGGTCATTTAAGAGAAAGTATTTTTTGACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 42751-41671 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEZ01000063.1 Streptococcus ruminantium strain DAT837, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 42750 36 100.0 30 .................................... CTCAACACAGTTTAGATTTATGAACCAAGA 42684 36 100.0 30 .................................... AAAGTTTTTGTCTGAATCCGGAAAGATAAA 42618 36 100.0 30 .................................... CAACTGTATTATGAAAGTAACTGGGGTAAC 42552 36 100.0 30 .................................... TATCTGATAAGACATTACTTGTCTCTTTAA 42486 36 100.0 30 .................................... AGCCGCTTGTCACGGATGCCTGGTATCATG 42420 36 100.0 30 .................................... CTGCTCATCTATCAAATTTTTATTCAAATC 42354 36 100.0 29 .................................... ATACATGATTTGCCTTACGCTCTTGGTCG 42289 36 100.0 30 .................................... GGTACTCCTAAAGGAGAATACAAGGTAGTC 42223 36 100.0 30 .................................... TGATTGCTAAAGACTACGGAATGAGTGCTA 42157 36 100.0 30 .................................... AAATTTAGAAGTCGAGGTCAATTTAGACGG 42091 36 94.4 31 .................................CC. CCCCATTAGGTCTATCAATCTTTGATAATGC 42024 36 100.0 30 .................................... GGAGGGCCTTCAACTCTTCCCTATCGCCTT 41958 36 100.0 30 .................................... ACAACCTCCCACGGGCGTACAGGCTCCCCA 41892 36 91.7 29 ............C................AC..... TTAGAATTATGATACAATAGATTTGTTAA 41827 36 83.3 19 ......A..T.....G................C.TA ATAATTTATATCATGTTAT Deletion [41773] 41772 36 100.0 30 .................................... ATAGATTGAGCATGTAACCACTCATATTCA 41706 36 94.4 0 ...........................T......T. | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 97.9 29 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTCTGCGAAAAGTTAGTTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTATTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGACTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG # Right flank : TTAATCAAACCAATATGTTAGGCTTACCCTGATTATAAGTGGGTAATGAAAAAACAAAAAATAAATGATAGAAGTCTTCTCTAGACTAGAAGATAAATAAGAAAGACACTCATTGAAGTCAATAGTCATAAATTTGGTCTGTTACATAGGAGTTTTGTTCCAGCCGAAACTATTCAAGAGTGAAGAAAGTTGACCAGACAGTGGAAAAGCTATGACGAAAGTCGGAGTTACAAGACCAATCATATCCGTAAAATCTTATAGTCAGGTGATATTAAGTTTGAGGATATTATGGGGCGGTCACAAGTTGCTGATTGATTGCAGCTAGAGCATCTATTTAGACTAGTTTGGATGAAGCAAGTTCCTCAACTTCTGAAAGTATTTGATGGCTATTTCGCTAATCACTACTGTTTTATATTGAGGTAATCATTGGAGATTTACGACTTTTATCAGAACCCAGCTAGAGTGGATTGGCGATTATTTTGTGTCATTATAAATTTCAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //