Array 1 34018-34725 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIML01000040.1 Paenibacillus xylaniclasticus strain NBRC 106381 PXY01_CON02910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 34018 32 100.0 35 ................................ TCTACATCATCAATACCATCTGCAAATTCTTCATG 34085 32 100.0 35 ................................ GACTACAATTTTAAAAAAAAAAGATGTATTTGTCG 34152 32 100.0 35 ................................ AGCGTTGACGCGCCTTAAGTCATGCAAGGCCGCTG 34219 32 100.0 37 ................................ AGATGATTTGCGACACACTCAACCAAAACATAAAGGG 34288 32 100.0 35 ................................ TGCAAGCGGCCGTCGTCGTCGTAAGTGTTCCGGCG 34355 32 100.0 37 ................................ TTATACCAGCAGGTCGTATCGCTCTCTATCGCCACTG 34424 32 100.0 35 ................................ TCCTTGCATCCCCATTACCTCCAGTTAAGTGGTGG 34491 32 100.0 35 ................................ CCACCGGATAACCTCGCGTACTCCACCATTTAATG 34558 32 100.0 36 ................................ GGCTGCTTTGTGTGCCTCTTGATACGTCGTGTATAG 34626 32 100.0 36 ................................ TGCTATTTGGCGGCATTTATGCCTGGAAGTATGGCG 34694 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 100.0 36 TCGCACTCCATGCGGAGTGCGTGGATTGAAAT # Left flank : GTTCGAGCATGATCGATCAGCTGCACGCGGTTTAATGGGTACCCGTAAGCTCATAATATTCGAGCATTCTTCCAAGATGGGGGATATCGCTGTACAGCCTCTGTTCGATGCTGTTACGGCTGAACTCAAAGATCCAGGCAAACCTGCACGGACATATGGTGATTATATCATTTCGATTAATAGGGAAGCGATCCCATCAAGCGTGAGAGTGATTGAACGATAAGTAGATATCAGTGTAGTATGAAACATAGGCATTAACTAATCGAGTACTGCTGGAAAGCGTGCTATTATCAATACTGTCTTTGCTATGATTTTTAAGTGCGAATGTGAAGCTCCCATAATTTTTCTAGGGGATTCGCACCGCGAATTTTGTCGAAATGATTTGGTTCGTTTGCTTTTCAAACGAAGTCAACTGTTGATCTATATTTTGATTCGATAGGTAATTAAGGGGCTAGGAATGATTTATCTCGCTAGGCGATCAATCATTCCTAATTTCGCTG # Right flank : ATTAGAGAATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGCGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8383-7890 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIML01000046.1 Paenibacillus xylaniclasticus strain NBRC 106381 PXY01_CON03320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8382 31 100.0 35 ............................... CGATGGGGATATGTCCATCCCGGCTACTACTGTTG 8316 31 100.0 36 ............................... TTAAAACAGTCTCCAAAGGATCTCCATGAGTATGCG 8249 31 100.0 37 ............................... CTTTTGTTACTGACGTAGATGCAGAGTTAGAAGAAAG 8181 31 96.8 34 ............T.................. GGCACCGCTTGCATGAGACCGAGCATAATCGTCG 8116 31 100.0 34 ............................... CGACGTGGATCGCGCATCTGGTGTTATTGCTGGG 8051 31 100.0 36 ............................... GAAAAAAAAACGCCGCGGGGAGAGATGATGAGATGG 7984 31 100.0 33 ............................... CGTCCCCCCCGGGGGGAAACGCAAAGGACCCGG 7920 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 8 31 99.6 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : AACGTAC # Right flank : CCAGCCCCGACTACGCGGATGCTGCGATTTCGGCCAAAATCTAGTATACACCTCTTTATCTGTTGGCTTCAGAGTATTTGATGCTATTTGGATACAAGTGAAGCCCTGCCAGCGTATGCAGGCGGGGCTTCTTTGTCTACCTCAGGATGGAGGTACTTGTCGAGTATTCATCTGACTCCATTCTATTTATGGGTTAGTGTTGGGTTAAATACACCAATACCGCTATTAGTATTACCGATGTATTCCTTGTTCTGAACCTTGAACGTAAGTTTTTTTACGCCTTTCACATCAACAGTAACATCCTCTGGGAAGGTGCCTCTACCAAAATCATGGGAGTACAATTCTACGCCATCACCTTCGATAATGAAGGTTACAATGTTCGTTGAATCCTGAAAATCCTTTAAGATTCCAACTTTCGCTTTAAACGTTGTGTACTGCCCGTTAAGCGGATAATCCTGCCAAATCTTTTCTACTTTAAGTGAAGGTCTCATATCCTCCGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 35-1204 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIML01000056.1 Paenibacillus xylaniclasticus strain NBRC 106381 PXY01_CON04020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 35 31 100.0 36 ............................... AAACTACTCAATCTGTTTAAGGTCACTATATTTATG 102 31 100.0 36 ............................... ATAACTATCTCTCTCCTCGGCGATTTTTAAATACCG 169 31 100.0 35 ............................... ACAAACATCACCCCCTCTAACCACACTTTTTAACG 235 31 100.0 36 ............................... GACCAAACCTGGTCAAAGATTGTGGCGCACGTTTTG 302 31 100.0 36 ............................... CTTTCTCGGTGCCTTGGGATGTTAAGCGACAGTTGG 369 31 100.0 39 ............................... CAAATGAGATTTACGATCATCTATCACAATTTGGTAAGG 439 31 100.0 36 ............................... GATTCCATGGGACGTTAAGCGACAGTTGGATATATG 506 31 100.0 35 ............................... ACAGCCGTTCACGTCAATCAACGCTATTAAGGGCG 572 31 100.0 37 ............................... GTTTACATACCTCCTTAAAATACTCCCTCACAACATG 640 31 100.0 36 ............................... GAATGCGATCCGGCCAAACGGGGACCATCATCGAGG 707 31 100.0 37 ............................... ACGTAGTGCTATTAACCTTTCGGCAAACGACATTTTG 775 31 100.0 36 ............................... TTAGCATCCCACGCTGGATGATGCGTTGCGTAGATG 842 31 100.0 34 ............................... TTGCCGTTCCGTTCTACGCCAGGCATCCGGGACG 907 31 100.0 36 ............................... ATGAACTTAGGCAGATTGATAGCCAGCTCTTCAACG 974 31 100.0 35 ............................... CATAACGGCCACAGGCATCGAAAACCCGAATTACG 1040 31 100.0 36 ............................... TCGTACTCCACACGGTACTCACTTGCGTCTGCCTCG 1107 31 100.0 36 ............................... TTGGTCTTCCGTTATGTTAAGCTAAGGTTAAAACTG 1174 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 18 31 100.0 37 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : CACGTGCTGCTATGTGTGACGCCGTCTTATTTTGT # Right flank : CTTTCTCGGTTCCTTGGGATGTTAAGCGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21145-20978 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIML01000048.1 Paenibacillus xylaniclasticus strain NBRC 106381 PXY01_CON03510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21144 32 100.0 36 ................................ CGCAAAAAATGGCCAAAGAGAGGTGAGTACGTACAG 21076 32 100.0 35 ................................ TGGCTGATTAGAGCATTAAGCGGCGCGATCGGTCG 21009 32 90.6 0 .........................A.A..T. | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 96.9 36 TCGCACTCCATGCGGAGTGCGTGGATTGAAAT # Left flank : TGCACTTTTCTTGACAACTCCAGAATACTGAGAGAGGAGGATTCCCTAT # Right flank : TGGGAGGGCAAAAACGGAGACCGCATGGGCAAACTCAGTCGCACTTTTTGCGAAACACGAGTAACGAATGCACGATAAAATGTTTCACTTACACCATCATCGGGGAGGTTGAAGATGTACTTACGCAGCGTAACCATCATGAGGAGCGAAGAGACAGACGAGTCCGCATATCCGTTCTCGATTCCGGCGGTGAAAGCGATTGATCGGTTGGAATTCAGCCATCAGGTTACGTTTTTCGTTGGAGAAAACGGTTCTGGCAAGTCCACACTGCTCGAAGCAATTGCTGATCAATGCGGCTTTCATACAGCTGGCGGGGGCAAAAATAATATTTATGACGTTGATGCCGCACATTCAGCTTTGGGCGAGCACCTCCGGCTATCTTGGATGCCGAAAATTTCGAACGGTTTTTTTATGCGCGCAGAAACGTTTTTTCAATTTGCCTCTCATCTAGATACGATGCCTGAGTCATTGCGATATTATGGCGGCAAATCGCTTCATGA # Questionable array : NO Score: 8.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGCGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1332-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIML01000077.1 Paenibacillus xylaniclasticus strain NBRC 106381 PXY01_CON05810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1331 31 100.0 36 ............................... TGCTGCGTGTCTCCGTAAACGGTTGGGCTGTAATAG 1264 31 100.0 34 ............................... TTCGATAAGATCTTTTTTATTGACCGTAATTTCG 1199 31 100.0 36 ............................... AACTCAATAATCCGAATAGCCAAAATTAAAAACGGG 1132 31 100.0 36 ............................... AACACTGGTTGATGTGATTGAGAAGGGGAGCTTTTG 1065 31 100.0 35 ............................... TTGTTTGTCGGAAATGAATTCGTTTGGAACTGGTG 999 31 100.0 34 ............................... CGGCCGGCTGGGTACCAAATTTTTTTACCAACGG 934 31 100.0 36 ............................... GACAGATCGAACAAAGTCGTTGCAAGGTCCGTATCG 867 31 100.0 35 ............................... AACTGCAGCTCTCAAAACAACCTGACTTAGCCGAG 801 31 100.0 37 ............................... CCGAGACGATTGGAACGGTACACAGGCCCCGACAGAG 733 31 100.0 35 ............................... CAGTTCAGCCTGTTTTGCTTCAAGTAACCCGGCTG 667 31 100.0 36 ............................... ATTGATAAAGAAGTCTATAAGCTTTACGGCGTCGGG 600 31 100.0 35 ............................... TCGTTAAATACCAGGAACCAGAAGTCTTAGTTTAG 534 31 100.0 35 ............................... TTGACGCCTTCCGGGTATTCTACCCGCGTCCAGGG 468 31 100.0 36 ............................... GCTGGAACGCCCAAATTTTTATATTTGCCGTCAACG 401 31 100.0 34 ............................... ATGTTTTGCTATGTGTGACGCCGTCTTATTTTAG 336 31 100.0 36 ............................... CAGGCGTAGATTGCTCCAAACAGCAGTATCGCAACG 269 31 100.0 35 ............................... ATTTCGGGGTGTATGACGTGACGGCGAAGTCAGAG 203 31 100.0 37 ............................... GGACACTATGCTTATCCGAGAATGAAATGGCTGACCG 135 31 100.0 36 ............................... TTTCTTAATCGCTCCATCCATCACTATCACTCCTTG 68 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 20 31 100.0 36 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : TGTTGGATCATCCGGCGGCGTTATGTCGGTTGGTTTA # Right flank : TTAATCGGGACTGTCATAGTCGTATTAGCAGTAGATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 666-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIML01000078.1 Paenibacillus xylaniclasticus strain NBRC 106381 PXY01_CON05820, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 665 31 100.0 38 ............................... TAGCGCCGATCCAGACCAATCTTAATGAGGACGTACCG 596 31 100.0 36 ............................... AAATTTTACCGCTGTTTCTGATGTGGGGCGTGTGGG 529 31 100.0 33 ............................... TTCGAAACTTGTAACCGGTCAACACGTACCGAG 465 31 100.0 36 ............................... GTTTTGTTTTTCCTTGGTGTTCCGATCCTGCTGATG 398 31 100.0 36 ............................... TATCAATCTAGTAAAACAACCTAATAGGCAAGGCGG 331 31 100.0 35 ............................... TCATGACGCAGGTTTTAAATTACGTACGTAAATTG 265 31 100.0 35 ............................... ATTTTCGTATCCTCCGATAATACATGAATACATTG 199 31 100.0 36 ............................... TCGTAAAACCATTGCTTATCTACTGCCGATCCGAAG 132 31 100.0 35 ............................... CCCAATCGATTTGAAATGGTACAGGATCGTATAAG 66 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 10 31 100.0 36 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : TTGCTTAATCTTTCTATATCACTATTTGCAATT # Right flank : TGCCCTCCTTACCACCATTTGATTAAATCTTTAAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1918-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIML01000082.1 Paenibacillus xylaniclasticus strain NBRC 106381 PXY01_CON90106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1917 31 100.0 34 ............................... ATCCTATACATGATACAGAAGCAAAGCCGGGTTG 1852 31 100.0 35 ............................... ATTTCCATTTTTTGCGCGTTGCGGCGCACCTATCG 1786 31 100.0 34 ............................... AATTAGCTGTCCTAATGCCGTGCTGCCTGCCGAG 1721 31 100.0 35 ............................... GAAACGGGGCCGTCTGTCATTAGACGGCCCCGTTG 1655 31 100.0 35 ............................... TTTTTGTCTGTTTGAAGTGAATAAGTTTTCTAAGG 1589 31 100.0 36 ............................... GGTGATTTGCTCATCGCTACGCTCCTGACGCTGCTG 1522 31 100.0 35 ............................... CAGATTCGCGCGGCTTGTCCGTTTTTCCGCTTCCG 1456 31 100.0 35 ............................... CAGTTCGTCGCGCGTAAGTATCGGCTTATAGTCCG 1390 31 100.0 36 ............................... ATTGTCCGTGTACTGGGCTTCTTGCCGCTCCCAGCG 1323 31 100.0 35 ............................... CACATACGTCGAATCCAGTCTGTCAATGAACCCCG 1257 31 100.0 37 ............................... TGGGCGTTAATGCCGTACGCCGACATTCGGGTAGTCG 1189 31 100.0 37 ............................... TAATAGTGTTAGCCATAAGTTAAAATCAGAAGACTCG 1121 31 100.0 36 ............................... ACGGATTGCCAAGCCGCGCCCCAATTACCTTGTAAG 1054 31 100.0 35 ............................... CCAACGTCTTGTTGGACGTGCTGGCGAAATACATG 988 31 100.0 35 ............................... AGACCTGGGGACCACTTGATAAAGAGGGCTATCCG 922 31 100.0 33 ............................... CTCGCGCACCCTACGGCTAATCTCTGAGCCGAG 858 31 100.0 36 ............................... TCGCTCCGATGGAACCGGGGACGTATACAGCGACAG 791 31 100.0 35 ............................... ACGACGTATCTGTTTGGCTCCGGTGCGATTGGTGG 725 31 100.0 35 ............................... GCTTTCATTGTTTCTGCCATCGTTTTTTATCCCCG 659 31 100.0 35 ............................... TGGGCGTCATACGCTAATAAGGCGAGGTTTTATTG 593 31 100.0 34 ............................... TTTTAGCGTGTACATGCCTATCGCCAGCTTGGAG 528 31 100.0 36 ............................... TCCATCCTCGTCATCATCGACGCTCACACTACCTTG 461 31 100.0 35 ............................... GAACGATTTACTACCAGATAATCCATAATTACTGG 395 31 100.0 35 ............................... TTTTTGATAACGAACAATTTGTTTCGCTTCATCGG 329 31 100.0 35 ............................... TTCAGCAGTCACTCTATCGCCAAGATATATTCTTG 263 31 100.0 35 ............................... TATAAGCGCGTACAGCGCGAGAGAAGAAAGGCAGG 197 31 100.0 37 ............................... GTATCGTCAAATTTGTGCATAAAATCTAACGTTTCGG 129 31 100.0 37 ............................... TCGGGGTTACATCATTGTTCAAGTGGTACTGTACACG 61 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 29 31 100.0 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : TTGTTACCATCTCAGAGCGTCCAAACCGCTGCCA # Right flank : TTAGACAACGAAGAGACGGCCAGGCGATACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //