Array 1 232-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXB01000041.1 Vibrio cincinnatiensis DSM 19608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 231 28 100.0 32 ............................ CAATGAATTGCAGTTGCGCGTTTGCTCCCTGA 171 28 100.0 33 ............................ ATCATGGAGTCACAGCGTGACATCGTTGAAATT 110 28 100.0 32 ............................ GTCAAGCATCCCCCAGCGATTAGTAGGCCCAA 50 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATGCGACTTTCCTTAGAGACTTTCAAATCTTACCTGAGTTTCAGGGCATAGGAATTGGAAGTAAGTGTCTTGATTTAGTTGTTAGATACGCTTTAGATAGACAATCCATTAGGTTAGTTCTGCGAGTTTTTAGTGAAAATCCAGCGATCAATCTGTATGAATCCAAGGGCTTCGTGAGAACATCTGAAGTTAACGGGTTGGTTGAAATGGAGTTTCCTTTAAATTCAAACACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTGTGATTACGGTGTTATGCGGTGAGTTGGTAGTAGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCACCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGATAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATAATGGCAAGATTTACGGGATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 291680-290512 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXB01000002.1 Vibrio cincinnatiensis DSM 19608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 291679 28 100.0 32 ............................ ATAATCATTGTTTGCAAAGTAGTCACGTAGAG 291619 28 100.0 32 ............................ TAGTGAAAATTTAAGAACAGGCAAATCACCAG 291559 28 100.0 32 ............................ TTAGACGGTCAATATATCTATTTAAAATCGGC 291499 28 100.0 32 ............................ TTAACTAAGTAACCATCGGGGGTTATATGAAA 291439 28 100.0 32 ............................ GCTCACGCTCTTTCGGTGGTCAACGTATTTCC 291379 28 100.0 32 ............................ TTCGAAGATAAAGATGTAGAGCAGCATCCCCC 291319 28 100.0 32 ............................ AACTCGCCACTGAGGGGTTATTGTCTGGTTTG 291259 28 100.0 32 ............................ TCTAACACGTAGTAGGCTTGGTCTGAGTTGAG 291199 28 100.0 32 ............................ AGTAAGCGCCTTGAGTAAAATAGAAGAATTTT 291139 28 100.0 32 ............................ CCGAAGGAGCCACCAACCGCGAAAAAGCTACG 291079 28 100.0 32 ............................ ATGAAGAGGTGCTGATCACCGATTTCGTCCCT 291019 28 100.0 32 ............................ ATTGTAGATGTTTGGGGGCGTCCGATTGAGTC 290959 28 100.0 32 ............................ TATGCGCGAGGGCGCTTTACCCCTGGAACAAT 290899 28 100.0 32 ............................ CTGTAGAACAGGCTGCACGCAGCACATATTAC 290839 28 100.0 32 ............................ TCAAGCAACACTACGAATAACAATACATCGGG 290779 28 100.0 32 ............................ TACTGAGTACAAATTGCCATTTCCTTGGACAG 290719 28 100.0 32 ............................ GATAAGCACTGGGGCGGCCTCCTTAACTAAGT 290659 28 100.0 32 ............................ TTAAAGGGGTATTCGAAACAGTGTGAGTATCG 290599 28 100.0 32 ............................ TTGCGGCCCACGCGCCCCTTGATGAATGACAG 290539 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GATGTAAATTACGTAAGCTTTGTGCGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCCGCGCTATGGGCCGCAAAATCCGGTAAACCGCTGGTGGAATGCCTAGCCGATTTGCAACAAAGCAAGCCGACAGCCTTATGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACGAAGCAGCGCTCCCCTGAAAAAAGCAGTAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAGTGGGCAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAACCAATAAATACAATGAGTTACAACTGGTGGTTTTTTATAAGGTAAAAATGCAATTTTTATCCTAACTGACTGTTGTAACTTGTTTTTATTGATTTATTCTATA # Right flank : ATCGCCAGCACGTTGATGGCGTGGACGATATCGTTCACTGCCGTATATTGTGCACCTAAACTTCTAAGCTAGTATCAGTCAGGATAAGACATTAAGAGAATGCCACCCCTTTATATCGCTAGATTTAGAGACAAAAAAAGACGTCCTGGGACGTCTTTTTTCTGGAATTTGGCTCCCCCTGCGGGACTCGAACCTGCGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTAAGGGGGAATGGGTTTGTGCTGCGGATGGTAGCTACTCTGTTCTCATGTGTCAACTTTTGGCATTAAAAAAAAGAGAATTTTTTTGCGTAGAAGGCTTTACTTTTCTGTATCCCTTACCCCATTTGACCTCGATTCAGTTATCCACCAAATTTGTGGATAAGTGTGTTGATGAATGTTGAGTAATTATTTTATTGATGTTTTTATCTTAGACTCTTTAGAGTGAAATCAGTTGATTTTCTCTATAACTTTATGTTTTTGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4844-3735 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXB01000027.1 Vibrio cincinnatiensis DSM 19608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4843 28 100.0 32 ............................ TCCACCGCGCAAGTGCGGAGCAACAACTTCTG 4783 28 100.0 32 ............................ AAAAGCAAACGAAGCGGAGCCGCTACCATTTT 4723 28 100.0 32 ............................ CGATTCGCCAAGCTCGCGTGATAACCCATATC 4663 28 100.0 32 ............................ AGCAAGGGCAATAGTTTGACCATATTTAGTAT 4603 28 100.0 32 ............................ TTCGGTTAAAATTACTCGTGTTGATATTGCTT 4543 28 100.0 32 ............................ ATTGGTGTGATTGATAGTGATTACCGTGGTGA 4483 28 100.0 32 ............................ CTAAAAAACGTCCGGTTTATTTTGAACGTCAC 4423 28 100.0 33 ............................ ATAAAAAAGAAGGGTGGTTTTAATTATGGCTTT 4362 28 100.0 32 ............................ CTCACCAACAAGCAAATACTCCGCAATGCCTT 4302 28 100.0 32 ............................ GCTCGGCACAAGCAAATACTCCGCAATGCCTT 4242 28 100.0 32 ............................ GCTCGGCAATAGCGATAAATTCGCCACTCGAT 4182 28 100.0 32 ............................ GTCTTGGGCAACGAAGCCAGCATGAGTGAATA 4122 28 100.0 32 ............................ ATTACCGAAGAAGTCGTCACTCACTCAGTAGA 4062 28 100.0 32 ............................ GGAATGCAAGCGCCTTATGCGATTAGCAACAA 4002 28 100.0 32 ............................ GTTTAAGCCCTCTCGAAACTTTTTTCGCGCCG 3942 28 100.0 32 ............................ TAGATTAGTCAATGCGTTACATGAAGCGCGGC 3882 28 100.0 32 ............................ AACATCAAGATTCCCTCTTGGACGGCATCGTA 3822 28 100.0 32 ............................ GGGAACTGGGAACGTGACCTCGTTTTTTTGAT 3762 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CCAACCAAGAATGGCAAATGCTTATCGACAAATCTAAATCGAGTTCCTTGTCAACACTCGCATTTTACCTGACTGGATGAACAAGGTTTCCTGACGATACAGCGGAAGTGTATACTGATATTTGCCTAAAATAATGTTGGCAAGCAGACTTTCGGTGGCGAAGCTTTTGGGATGATGCTTATCGGTGCGGGTTGTTGGTGAATCCTAACGACTGCTGATTTGGGGATTTTTACGGTTGTTTATGAGCTACACATTTGCTATATCAATATAGTTTGTTGCTGTGGTGTTTGTTTGTAATATATTGATATATAAAAATAAAGTGTTGTCTGCGTTGGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTTTATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTGGGATTGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGTATTTTTGGTTCGGGTGAGCATTTGAGGTGACGGCTGTTTAGTTTAAGTGCAGCGTTTTGCGTTACTTGCCCCTTAATGCAGCGTTATGTAACCGTAAAGAAAAAGACCGCAATATATTGAAAATTAAAAATATTTTTATGCTTTTGCTTTTTTAAGTTGGCTTCTACTTCACATGTTTATGGTTTTAACTTAGTGTTTTAATTGGTTATTTATAAAGTTTGTAAAGTCAGTCTTATTCATGTTGGTTTCGTTTCCGTCTTCTTGTTCTTCGAGTTTTCAGTCTTTTCTCAATGGTTAAGTGAGTTTGCGATAAGTTTGGTGGCTGTTATTTTTTTCTTTGAACTAGGGCTCGCAGTTTCGTCGTTGTCACGCAAATTCTACTGGGTTACTGCTAACTTTTCATGTAAGTTAAACGATATTTGGCAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1193-1881 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXB01000045.1 Vibrio cincinnatiensis DSM 19608, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1193 28 100.0 33 ............................ ATTTCAACAAATGGATTTGATTTTAGCCCGTCT 1254 28 100.0 32 ............................ ATCGCTGCCGTGATTGCATTAATTGCGCGCAC 1314 28 100.0 32 ............................ TAAACCAGAACCAGAGCTTGAGTTGGAGAAAG 1374 28 100.0 32 ............................ AAAAAGGGTGGTCGTTTGAGTCACTGGGTCAA 1434 28 100.0 32 ............................ TTCCGGCGTGCGGATTACAATTCGAAACTTGA 1494 28 100.0 32 ............................ ATTTGGCAGTACCACTGAGTGAGCCAAAAAGG 1554 28 100.0 32 ............................ ATTACGCACTTTAGGAGCAAAACCACGAGAAC 1614 28 100.0 32 ............................ CGACTGAGCGACAGAACTCAAGAGACAATTAT 1674 28 100.0 32 ............................ AAGTTGCCGAAGAGCACAATAAAACCATTTTA 1734 28 100.0 32 ............................ TTTAATGATGGAAATAAGCGTACCGCGTTTGT 1794 28 100.0 32 ............................ GATCATCTTTTCAGCTTCAAATGTCCCAGAAA 1854 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGTTAGAATCGAGTGCAAGACCATGTTTTATCAATTCTCCAAATTCACAGGTAGGTTGAAATGTTTACTCAAAAAGAACGCCGATATATTAAAAACTGTTTGAAAGAGAAACTTGAGCGAGAGCAACTTCAGTTGTCTCAGATGGATGAGGATACTGATGAATACATGGAAAAGGCAAATGATCTAATGGTTCTGGATTCACTAATAGCTAAACTTAGTGATTAAACAAACATAACAAACGCTTCAAGAAGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGGTTACGGTGTTATGAGGAAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTTGTTGAATCCTAACATATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTACTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCAGTTTTGGTTTGGATGCGCATTTGAGGTGACAGCTGGTTAGTTTGAGCGCAGTGGTTTGCGTTGCTTGCCCCTTAATGCGGCGTTAGGCGATATTCGTGAAATTACACAAATGATTCGTTGATTCTTAATCGTGATTCTTTGAATTATTTTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //