Array 1 31816-30658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048402.1 Pasteurella multocida strain HS_Canada1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31815 36 100.0 30 .................................... GGAAGATAGCGAGTTCGAATCTCGTGGCGG 31749 36 100.0 30 .................................... ACTTAATCGCAGAATCTCTTGTTTGGACTT 31683 36 100.0 30 .................................... GAATACGCAGAGTATTCTAACGCTACGGTA 31617 36 100.0 30 .................................... AATAACGAATTTTGGTGGAGATCTCCGTGT 31551 36 100.0 30 .................................... TTCTAGCTTTGAAAAATCACTAATTCCCCA 31485 36 100.0 30 .................................... GCGAAGTTGGTTACAAAGTTAATGAACACT 31419 36 100.0 30 .................................... GCATATCGTTAATCTTGGCGCGATGTCAAC 31353 36 100.0 30 .................................... GCTACGTCTTGAGCCAACACTCGCCGTTGA 31287 36 100.0 30 .................................... AATGGGCTTTGTAGCTGTATCCAGTAACGA 31221 36 100.0 30 .................................... TCTGATAACGATAAATATTCAATACGTCCT 31155 36 100.0 30 .................................... TAGGGTGTACTACACAAATAGTGTCTTCGC 31089 36 100.0 30 .................................... ATATTGTTGAAATGATTGCAAGAACTATTG 31023 36 100.0 30 .................................... ATATGGAGTTCATATATGACTTATAAATTA 30957 36 100.0 30 .................................... ATATCATTGCCCAGATGTCAGGACTTTTCT 30891 36 100.0 30 .................................... TACTTAACAAATAACTTTATCGCTGCGGTT 30825 36 100.0 30 .................................... CAGTGACATCAATAGGTTCAAGTGCAATTG 30759 36 100.0 30 .................................... ACTTTAGTCACACAAGATTTTGAGCGCGAG 30693 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : TTTTTATTTAGTAAATACCATTTGCCATAGCTTATTAAACGAGGACCAATCAAGCGCTAATCTAAATCAGTCACTTAACTGCTCCAGTTTTTTATTCAAAATTGCGACAAGATCTGGTGGATCATCAGGAATAACGCATTGTCCAGATGATGATTCTTCGTTTGACTGCTGACTTTTTGAACCAATCACCTCTTTAAACTCCGCAGACAGTGTAAAAAAACCCGTTTTGTGAGATGTACCCCATTCTTCACACTTAAAATGTCCTTGCTGTGTTGAATTGTATGGTGTCCAAAGAAAAGATTTTACTGCGCCATGATCGTTGAGAAATTTATCAATCTCATTAATTAATTCCTCACTCCCAGAAAAAGAAACTGAATAAACACGAAGGTTATTATTTATTCCCTGTGGGATTCGCTGTTCATAGCCGTCGCCAAATCTAATCGTATTTACGTTTGGCTTTTTTTTCATTTCCATGCCCCATTGCGGCGCATATTCAAACA # Right flank : CTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 300573-301080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048402.1 Pasteurella multocida strain HS_Canada1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 300573 28 100.0 32 ............................ TTATAGCGTTCTACATCATCTTTTGCGATAGG 300633 28 100.0 32 ............................ TGCGGGCTTTTGTCCTACTTTTACTGTTCCTA 300693 28 100.0 32 ............................ TGTGCTGTATGCCGTTGCGGTGCTACTTACCC 300753 28 100.0 32 ............................ ATATCATCTGCTTTACTTCCCATGATTCCACC 300813 28 100.0 32 ............................ GTTTGAGTCGAAGTTATTTGTCTGATTAATCA 300873 28 100.0 32 ............................ CCTAGCAAGGTTATTAAATCACGTGAACGGTA 300933 28 100.0 32 ............................ ATAGTGAAAATCCTGTCGCGCTTACACCGAAC 300993 28 100.0 32 ............................ ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 301053 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGATTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1545681-1542777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048402.1 Pasteurella multocida strain HS_Canada1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1545680 28 100.0 32 ............................ GATTAAGTATCCTTTTGTGGTGTAATCACGCC 1545620 28 100.0 32 ............................ TGAAATCACAGGCGGGCGGTTTAGTATTAAAA 1545560 28 100.0 32 ............................ GTTTTTAAAACGTCCATTTGGCAATCGTGAAG 1545500 28 100.0 32 ............................ GCACTTTCTTCTTCAATCCTCACCCAGCTTTT 1545440 28 100.0 32 ............................ TAACAATGCAAGATATTTATCAACAGCAAAGC 1545380 28 100.0 32 ............................ CAATGGACCGCCTAGAAATGCACTTGCTGCAC 1545320 28 100.0 33 ............................ GACCCAAAATACTCTTTGAAGCTCTCGCATGTG 1545259 28 100.0 32 ............................ TTTATGCACACGTCGGTCAAGTAGAAGCGGCT 1545199 28 100.0 32 ............................ GTTGGTTTAATAAAGGCAAGCTCTGCATCACT 1545139 28 100.0 32 ............................ GGCAAATGATAGTGCAGTAGATAAGTGCAAAC 1545079 28 100.0 32 ............................ AATTGCCCCTAATTGTTCTTGTGTCAATTTTA 1545019 28 100.0 32 ............................ TGATATTCCACAAGGCGAACCACAAACAGACA 1544959 28 100.0 32 ............................ AAGTGTTCTGCGTAGGTATCGGGGTCAGCGAC 1544899 28 100.0 32 ............................ TATTCCGGATGTCGGTTACTCAAATGGGTGGA 1544839 28 100.0 32 ............................ TGAGGGAGTGCACATTCTCATGGTAACACCTG 1544779 28 100.0 32 ............................ CGCTGGATGTGGCGGATCAAGTGCGGGAATTA 1544719 28 100.0 32 ............................ TTTGAGCTGTCTTAATGAGTGTATTAAACCGT 1544659 28 100.0 32 ............................ AGTCACAAATTTCTATATCTGTACAAGCCGTA 1544599 28 100.0 32 ............................ GCTAGAAATCGTTATTTTTTTCATGCAAATCA 1544539 28 100.0 32 ............................ ACCCACCTCAATTTAAGTAAGGGTACCCCCGT 1544479 28 100.0 32 ............................ AAAGCTAATTGGAGCAAGTGATTGGAAAAAAT 1544419 28 100.0 32 ............................ AGATAAGTGGCTTAATAGCGGAATGCACATCT 1544359 28 100.0 32 ............................ TTGCGTTACCCCTTCTCTTGTTTCTATAATCG 1544299 28 100.0 32 ............................ GTCTGTTGTGCTTACAGAAGCCATTACAAAGT 1544239 28 100.0 27 ............................ CAAATGGGCGCTTTTTGTTTCTATTTT 1544184 28 100.0 32 ............................ TCTTCATTTTACAACAATCTTCACAACAACAC 1544124 28 100.0 32 ............................ AATAGGTGAAAAAATCGGGCGTGATTTCGAAA 1544064 28 100.0 32 ............................ TTTGATTTTGAATTTTAATATTTTAGAAGAAA 1544004 28 100.0 32 ............................ ATGTCGAAATTCTCACATTTTATTTAACACCG 1543944 28 100.0 32 ............................ AATAGGTGTTAAGTTATATAAACTTTCATGAC 1543884 28 100.0 32 ............................ ATCATAGCCTTTTTCATAGCGTTGTTTTTTAT 1543824 28 100.0 32 ............................ GCAGTGAACTCAGGACAATTCTGAGCGACCAC 1543764 28 100.0 32 ............................ ACCCACCTCAATTTAAGTAAGGGTACCCCCGT 1543704 28 100.0 32 ............................ ACCTGCTTGTAATGTTCGGCAAGTTTGGCAAT 1543644 28 100.0 32 ............................ GACACCTGTTTTAGACCGTGCTGACATTCTGA 1543584 28 100.0 32 ............................ TAGGGCCAGCAACTGAAAATGAGATAAATCAA 1543524 28 100.0 32 ............................ AAGAATCATGAACGCAAATGAAGAAGTCAATA 1543464 28 100.0 32 ............................ CGTAGCGCAAGTGTGTCCAAGTATTCCTGTTG 1543404 28 100.0 32 ............................ TTCCAAAACATTACTGCATTAGCATCGTCAGG 1543344 28 100.0 33 ............................ AATTCTGTTTCATCGGCAACTCACCTTTTACAT 1543283 28 100.0 32 ............................ TGAAATTTTCAAATTGTCATTACGCAGTAAAA 1543223 28 100.0 32 ............................ TTTCCTAAAAATAGCTTAAATAAACAGTTTAC 1543163 28 100.0 32 ............................ TGCAATCATTACCGCAATCGTAATTACTGCAA 1543103 28 100.0 32 ............................ CATTTTCGGAAATTAAAGATGAATAAGGAATA 1543043 28 100.0 32 ............................ GTGCGTGAGTTCACTCGCACGCATGTCAAAGA 1542983 28 100.0 32 ............................ AAAGACCAAGACATTATTCAAAAGATGACTTG 1542923 28 100.0 32 ............................ GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 1542863 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC 1542803 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCGGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTAG # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //