Array 1 431957-433082 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKX01000001.1 Salmonella enterica strain BCW_1980 NODE_1_length_696253_cov_2.36717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431957 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 432018 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 432079 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 432140 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 432201 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 432262 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 432323 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 432384 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 432445 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 432506 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 432567 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 432628 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 432689 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 432750 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 432811 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 432872 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 432933 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 432994 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 433055 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449341-451004 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKX01000001.1 Salmonella enterica strain BCW_1980 NODE_1_length_696253_cov_2.36717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 449341 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 449402 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 449463 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 449524 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 449591 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 449652 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 449713 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 449774 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 449835 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 449896 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 449957 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 450018 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 450079 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 450140 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 450201 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 450262 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 450323 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 450384 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 450445 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 450548 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 450609 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 450670 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 450731 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 450792 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 450853 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 450914 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 450975 29 96.6 0 A............................ | A [451001] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //