Array 1 83820-83222 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJQ01000003.1 Neisseria perflava strain UMB0023 .16933_8_36.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 83819 36 100.0 34 .................................... CGAATATCCCAGTCAAATTCTGGAAGTACTTTAC 83749 36 100.0 35 .................................... TTTGATAAAACATTTCTTGCATAATGATTCCTTTC 83678 36 100.0 34 .................................... CAATATCATCCTCACTAGGATTCACGCGTTTGAA 83608 36 100.0 35 .................................... ATCTCTGCACGCATTTGATAAAGACGCAGAGAATC 83537 36 100.0 36 .................................... CCCAATGAATCCCACGCGGTTTCACCGCCTGATTCA 83465 36 100.0 36 .................................... AACCTTCGCTGACATTAACAACGACAGCACCTGATT 83393 36 100.0 31 .................................... CTTGAGTAGGTACTTCTTTGCGTTGGTTGAA 83326 36 100.0 34 .................................... GCCATAAAACCAACTTGTACCCAATCATTACCGA 83256 35 83.3 0 .................G....TC......-..TT. | ========== ====== ====== ====== ==================================== ==================================== ================== 9 36 98.1 34 CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Left flank : AGGGAGAAAAAAAAATATAGCGTCGGTGACAACGAAGGCAGCCAATACTTTAAAGAATTGGAAACCGATTTGAAGCAGGCCGCAACGGACGGACGCTTGAGCAGCCAAGACAGACAGCAAATTACCGAGCAACTGGCTCTAAAACCCGTTTTACAGAAACACCAGCCCAACTGGTTAACAAGTAAACGCGAGAAAAGCATCAAGGAACTACTAAAAGCTTTACAAAACAACTCAAGCAGATAGCAAAGGCCGTCTGAAACTTTCAGACGGCCTTTTACTAAAATATGCTTCTCAAGCAATGGCTTGGATGTTAAAATGACAATATTGTTCCCAATAGGGGACAATAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCTTATTTTTCAGGCGGAAGCCTTATTTTCTATGTTAATCCCCGTTTATCTTTGTGAATATTTGTAATTTAGATATTGACCATTTTAACCTACTGAATTTAATAGAGAAAACACCCCTCCGCT # Right flank : AACGGTAAACAAATGCCGTCTGAAACCTGTATTTAGGGTTTCAGACGGCATTTTTATAAGGAACGGCCATCTATAAGACGGCCTTTGGTTTGTCAGCCCGAAATGACCGGAATATGGCCGCACAGTACGATGCCTTCCGCCAAGAGGCTGCCTTTGAGTTCGTAGATGGGGCTGTGCGGGCTGAGCGGATAGATACGCAAATCGTCTGCCTTATCCAACATTCCGGTCAGTTTTTGAAACAAATGTTGCGCTTCTTCTTGTGTGCCTTTAAAAATGAAGACGCTGTTTTGCAAATGTAGCGCTTGTCCACTTAAAAAACGGTAAGCCCTGCCCAATCGTTTACGGTCGGTAATATCGTAGGCTATCAGCCAGTTTTGTTTCATGATGCCTCGCTTTCTTCATCGGTTTCGTTTTCTATCACCATCCAGCCGCCGTCAAGGGCGATATCGGGCTGACGGCTGACTGCCGCCAGATACTTGAGCAGGCGGATGCAGCTTTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 86348-85676 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJQ01000003.1 Neisseria perflava strain UMB0023 .16933_8_36.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 86347 36 100.0 37 .................................... GATGTTCATTTTGTAGTCCTTTCGTTTAGGTTAATGG 86274 36 100.0 33 .................................... TCAGCAAACTCCTTGGATGCTTCCGCGTAAAAC 86205 36 100.0 36 .................................... TTTCTGGTGAAAGTTGTAAGCTACGTACGATTTTCT 86133 36 100.0 35 .................................... CCTCAGGCTGAAGCGGACGTTATCCGCTTTATTGG 86062 36 100.0 34 .................................... GCAGCAGCTGCTGCTATCGACATCATGGTCTTAC 85992 36 100.0 35 .................................... ACAGTCTGTTCAACAGTGTTACATCACCGTGTGCC 85921 36 100.0 35 .................................... ACTGTCTTTAGCCAACAGTACACGGTCTGAATGAG 85850 36 97.2 34 ...........T........................ GTTGAGTCTAGGACGATAGAGCCAGCGTTAGAAA 85780 36 97.2 34 ...........T........................ GCATTTTTGTCGGCATAGTCGCCGTCCAATGCCA 85710 35 86.1 0 ......................TC......-..TT. | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 98.1 35 CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Left flank : GTTTTGAAAAACGCATCATCTTCTCCGGCATCGCCGCGTCTTACCCGAATCCTGCCGAATTGAACGGCCGCATGGTCATCGCCGTCGCCAACTTCGCCCCGCGCAAAATGGCAAAATTCGGCGTATCCGAAGGTATGATCCTCTCCGCCGCCACAGCAGAGGGCAAACTGAAGCTCCTCGACGTTGACGCAGGCGCACAGCCCGGGGATAAAGTGGGCTGATACCTTTTACCACAGCACAAAGCAAAGGCCGTCTGAAACTTTCAGACGGCCTTTTACTAAAATATGCTTCTCAAGCAATAGCTTGAATGTTAAAATGACAATATTGTTCCCAATAGGGAACAATAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCTTATTTTTCAGGCGGAAGCCTTATTTTCTATGTTAATCCCCGTTTATCTTTGTGAATATTTGTAATTTAGATATTGGCCATTTTAACCTGCTGAATTTAATAAAGAAAACACCCCTCCGCT # Right flank : AACGGTAAACAAATGCCGTCTGAAACCTATATTTAAGGTTTCAGACGGCATTTTTTATAAGAAACGGCCACCTATAAGACAGTCTTTGGTTTATCAGGCCGAAAGGCCGGTGATTTTACAGCCCGGCCGTGATCCGATAGCCTCCATGCCCGAATGTGGTTTCTTTTCCGATATGCAGCCATTGTCCAATATAAAGTAAAGCCGACAATTCCTTAGGAAGATCATAGAAAGTCCACTCTCCCATTACTCCTTGATAAGTCATATCGCGCTGTTGTCTGTTGGAATGACGTTTCCATTTTGTATCAGATAAAGATTTTCTCCCCCTGACAAGCTCTGTCGCCCTGATTAATTCTTGAAACCTGCCCTCCAACGGATGTTCCCAATGCGTCGTTGCAATCGCAGAAATATCGCGTATTGCCTGACGCAAAAACATGGATTCGGTCAGCTGTCCGGCTTTCATCACCTTTTTGTCGTGCCGTATCGTCAACGGTGTCAACAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Alternate repeat : CTCTGAAAAACTTCCCCACCACATGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 44166-45530 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJQ01000002.1 Neisseria perflava strain UMB0023 .16933_8_36.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 44166 36 100.0 32 .................................... GTAGAATACGAAACTGAAACCCGTCACTACGC 44234 36 100.0 34 .................................... TACTGGGTCAGGTACAGGGTGCGGTACGAGGTGT 44304 36 100.0 31 .................................... CGCAAGCAAGACGTATTGGTTGACGACGAAG 44371 36 100.0 33 .................................... ACCACAGTAGAGTCATATTCAAAATCAGGATAA 44440 36 100.0 34 .................................... TCTTCGAGACGTTCTACTTCCTTGACGAGAGTGT 44510 36 100.0 33 .................................... CGAGAAAGCTAAAACTTTAGCTGCCTCCTTCGG 44579 36 100.0 34 .................................... GTTGGACGACTACACGTGTCATGCAAACAGCACA 44649 36 100.0 35 .................................... CTGGCAAGACATCTACATAAAGGTACCATTTTCCT 44720 36 100.0 33 .................................... TTACCAGCCTTTACAGACTCCACACGTTGTACC 44789 36 97.2 33 .............T...................... CTGAAGGAAGTTTTGGGCGCGTTGAGCTGCTGC 44858 36 100.0 34 .................................... GACGTACACAGTCGAAGCAATACGCGTCGATTTG 44928 36 100.0 36 .................................... GGTAAGATGTCCTACCTTGTAGTGCACCATTGATAA 45000 36 100.0 35 .................................... AGCCTACTTGCAACCAGTTTTCACCCAGTTGGATG 45071 36 100.0 34 .................................... CCAAGGTTTAGGTGCTACTGCAGGAATCACTTTG 45141 36 100.0 36 .................................... CGTGCCACAGTTTCGCGGCCCAGAGGTGAGTTAATC 45213 36 100.0 35 .................................... GCTACGAAGAGCAGGCAAATGATGACCATCGCAAT 45284 36 100.0 33 .................................... AGATTACGGAATGCTTGGTAAAATGCTTTTTTA 45353 36 97.2 35 ................T................... ACACTGGATACTTCCAATTTAGTGTCCAAGCGACC 45424 36 100.0 35 .................................... GCCACGATGTTGCGCATATCCTGCGCCAAGTCCGC 45495 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 20 36 99.7 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGGCAAGAAAGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTACAAACTGCCGCAGAAAGCCCCGATTTGAGCGCAGAGCAGAAAGCCGAAATCGCCGTTGCGTTTGCCGTCAAAAAGATGATGACAAAATACGCGAAATGGCTGACCGACAAGCGCGGAAAAGATCTGAAACCCATCTTAGCGAAGCTGCGCGGCGAATAGATTTTCGTCTTTGTCTGAGCCCGAACATTTCAGACGGCCTAAAGCCGTAAAACAGTTAAAAAGCGTTGTCGAATACGGAGTACACGGCTATAATTCGCAATACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTTAGTTAATATTTCGTTAATTAATGTCTTTGTTTATTAAGAAAAATGCTAACATTTCTTAACTATGCAGAGCTTTGAAAATAATGAAATTTTTTAATTGAGTGCA # Right flank : CCCGTTTTCGTTTCTCATTCGTGCGCCGCAATGCGTCGGAAGACTTGCCCTGCTAACGTTGGGGACGAGTGTTTTTCAGACGGCCTAAAAGCAAGGCCGTCTGAAACGGTTGGATGGTTTATCCTGTCCCTCTTGCGGCAAACAGCAAAATAGCCTTGATATTGCATCAAGGCTATTTTTGTTTTTTGATCGGTTTTTAGTTTTTGGTACAAAGCAGGCTGGGAATGCCGGATGGGGCCGTCTGAAAATCAGGCTCTGCTGTCGGGTTGAGGCTTAAAAATATCGGGTTGTCCATCCTTTATTTGTATTTTGTTTTTCATCAGTCGGCAGGCGGTATATAAGCAGGTTGGTGTTTACAGTGTGCCGAAGTTGCCCAATATGATGCCTTCGGGCAGGGCGGTTTGCCCCAAAGTATGGATGATGCTGCTGTTGGCCAGTGGGTAGAAGCGCAAGTCATCCTGTTTGGGATGGAGCATTCGGCATAGTTCTTCAAAGCATTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 51480-50526 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJQ01000002.1 Neisseria perflava strain UMB0023 .16933_8_36.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 51479 36 100.0 35 .................................... CTAGCTCTTTCAGCCAGAACCCACTCTTCTCTTAC 51408 36 100.0 33 .................................... TTTGATAGCATTTGCAGATGGTCGTTTGTTGAA 51339 36 100.0 35 .................................... AAAGTCTCTGCTATAGAAGCAGCAGATTTGAACAG 51268 36 100.0 33 .................................... ATGGTTTGATGGTTATTTGCCCAATTTCTCGGC 51199 36 100.0 34 .................................... GCCAGTCGGCTGGCTCGCATGGTCTTGCGGATAC 51129 36 100.0 34 .................................... TTATGCCTTAATCTACATACTTCTCTAACCAAGG 51059 36 100.0 33 .................................... CGTTTGTCGTCACCATAAAATTTTCCATTCCAA 50990 36 100.0 35 .................................... GTCTTCAAAGCGTTCTTTGTAGCATACTTTACCGC 50919 36 100.0 35 .................................... TTCTTCAAAAACTTGTGTTTCAATATTTGAGTTAT 50848 36 100.0 34 .................................... TAACATTTGTTTTTGTTTCTCTAAGAATGATTGC 50778 36 100.0 34 .................................... AGTAGTCTCTTCATTGCTTACTCACCTTCGTATT 50708 36 100.0 34 .................................... TCATTGCTGATAAAGAATGGCTCAAAAACAATGC 50638 36 100.0 35 .................................... TTGTCAGCCGTTTTCTTAACCCACTTCTTCATCAA 50567 36 88.9 0 .......................TT...C..T.... | CT,TA,T,T [50530,50538,50541,50549] ========== ====== ====== ====== ==================================== =================================== ================== 14 36 99.2 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGTTCCGTAAAAACCAACTGATTTTTTGCGAGCTCAAATCCGATTTAAGCTCCGAAAGCAAGCTGGCAGACCCACTAAGGCAAGTGATCGACCAAAGCCTCAACATGGGCAAAGTGCGCCGCGTCCTGATTTTGTCGCCCGTCATTAAAAACAATGCAAAGCCGCAGCAATGGACGGCATTCGAGCGCAACTGCGCCGCCAAAAATATCCAAATCATCATCGCCGTCAACAAAGAATCGCTGAAAATCCTGACAAACTGACATCAAAATCCCCTTAACACTTTACTGTCGTCTGAAACAGCTAAAAAGCATTGTCGAATACAGAGTACAAAGCTATAATCTGCATCACAAGTTTTCCGACGGATAACGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAATATTTCGTTAATTAATGTCTTTGTTTGTTAAGAGAAAATGCTAACATTTCTTAACCGTGCAGAGCTTTGAAAATAATGGGATTTTTTAATTGAGTGCA # Right flank : GGCCTTACTTTAAGGCCGTCTGAAAATATCCGCTGTCTTACCCTTTTCATTGGGACAAAAATAAAACGGCCTTGACGGTTTGCTCCGTCAAGGCCGTTTTATTGTATCCGGCGTATCTTTACAGTGTCCGAATAATGCGGTACTGCCCGTTGCCGAATACCGTTTCTTTTCCCAAATGCAACCATTGCCCGATATACAGCATTTGTGCGAAAGCGGGGGAAAGGTCGGTCAATTGCCATGTTCCGATGATGCCGCTCAACGGCGTAGTTTGCTTTTGACGGTTGGAAAAGCGGCGGTGTTCGTGCCATAAAAGCTGCGGAGACTGTCCTTGTCCTGCGGCTTGTACGGTCAGCTCGGCCGTGTCGGCGTTGTTTTGCCAATAAAGCCGGGCAAGCGTCAGATAGCGGCGCATAAGTTGGCGCAGAAAAATTGCCTGAGTCATTTCGTTCTCGCGCAAAATCCTGCCTTTTTGCTGGATACGCAAGGGGGTGAGCAGCTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 3 195381-202525 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJQ01000002.1 Neisseria perflava strain UMB0023 .16933_8_36.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 195381 33 97.0 33 T................................ TTTCAAATCGTGATGTGTACCTACAGATACTTT 195447 33 97.0 34 T................................ TGTTGTTGGTCATCCTGATGCATCATTGGAACAC 195514 33 97.0 33 G................................ CTGTTATGAAAATCAAATCGCCTGCTTATGTGG 195580 33 97.0 33 C................................ GTTTCAATATTGTTCAACCTGGCTCTGATTGGT 195646 33 97.0 33 C................................ ATATGGTGAATTGGTAACAGCACTACCTAATGT 195712 33 97.0 32 T................................ TACTACCAAGATTCGAACATTGAAGTAATTGG 195777 33 97.0 33 T................................ TGTCAACCCAACGTAAATTTGTTTTTGATGATA 195843 33 100.0 34 ................................. CGTAATTCTGACAACATCTCTACTACTGAAGGTG 195910 33 100.0 34 ................................. CGCAAATCACGGTAGCCGATGTGTTTGAAGCCCA 195977 33 100.0 34 ................................. ATTAATATTTATTCTGATAAAATCCCAATGATTT 196044 33 97.0 35 T................................ ATCCACGCGGTCAAGCAGATATTGCGGCCAACTGA 196112 33 97.0 35 C................................ GTCGATAAAGATTAATTATTTAAAAGAAGAAGGCC 196180 33 97.0 33 G................................ TGCCGTGGTCGTTGCAAGTCATAGGCTTGTACA 196246 33 100.0 33 ................................. AATCAATTCTTTCGGCAATTTGCCCCATATGGT 196312 33 97.0 34 T................................ TTGGCGGCGGCGCGCCTCGGCGGTGCGCTCTTTG 196379 33 97.0 33 T................................ TTCTGTTTTCAAAAAGTGTCCAACAGGTTTTGG 196445 33 100.0 33 ................................. ATCAAGCCATTGTTCATATTTATCAACAGCTTC 196511 33 100.0 34 ................................. ATGGATTGACCGACAAATCCAATACTGGCAACAA 196578 33 100.0 33 ................................. TTAACAAATACGTATATCCGCCGTCTTATATGT 196644 33 100.0 34 ................................. CGTGTCAATAAGACTAAGGGAATTTATACCACCT 196711 33 97.0 34 T................................ CGTGTCAATAAGACTAAGGGAATTTATACCACCT 196778 33 97.0 34 T................................ ATTATCGATATTAATGAAAAATGAGAGAAAAAAT 196845 33 97.0 34 C................................ TGCAGGGCATCTTCGGCGATGACGCCGAGACGCT 196912 33 97.0 33 C................................ TTGTATCGCGCGTTTGAAGCCGTCATGCGCGAA 196978 33 97.0 34 T................................ ACGGATAAGCGTAGGGATATAATATGCGATATAA 197045 33 100.0 32 ................................. ATTATTGATATTAATGAAAAACAAGAGAAAAA 197110 33 100.0 32 ................................. TACGCCCCCGATGGCATCTACTGCCAGTCTAA 197175 33 100.0 36 ................................. GATTACCACCGCCATGCCTAAGGCGTTGACGGAGCG 197244 33 97.0 34 T................................ CGGAGAGATAGATAAAACGCTGGCCGACTTTGAG 197311 33 97.0 33 C................................ GGCTTTGGTCTTGGCGGCGGTGTAGTTTGCGGT 197377 33 97.0 33 C................................ ACACATAAAGAGCTGACGAAATTCCGCTGGCGA 197443 33 97.0 32 G................................ AGACCGCCTTAAACCCAAACGCCTTTTAAAAA 197508 33 100.0 33 ................................. CGGCAAGCAGTGGCTGACCGCTGAAGACGACAA 197574 33 100.0 33 ................................. ATATCGCGTAAAGCCGACCGTAAAAACGACCGT 197640 33 97.0 34 T................................ TTGTGTGAGTTGATTCACGTTCATTTATCGCTCC 197707 33 97.0 34 T................................ CGAAATTGGTGCAACAGGCCGTCTGAAATTGGGA 197774 33 100.0 34 ................................. GATTATGAGCCGTTTTATAACGTAGGTCATTCCA 197841 33 100.0 33 ................................. AGGTAAGTTCAAAGGCGCGTTAATTAACGGCCT 197907 33 97.0 33 G................................ GCTGTAGCCTCGAACTTCTCGCCGGTGTTAGGC 197973 33 100.0 35 ................................. TTCGCCGATGGCAACCGCTATATCTTCGGGCGCAA 198041 33 100.0 34 ................................. GGGTGTATCGCAACAGCCTGTGTTGCAATCCAAG 198108 33 100.0 34 ................................. TTAGTAAAGGCATTGCGGTTTTCATTTTCGATTT 198175 33 97.0 33 C................................ AGTGTCACAATCAAGGATGGCGTTTTGCAGTTC 198241 33 97.0 33 T................................ CGTACATCAATTAAGCAACGGCAAACAAATAAA 198307 33 97.0 34 C................................ GTTATAAATGTTAATGATTTTGATATAAGAGGGG 198374 33 97.0 33 G................................ TGCCGTCCGAAAAATAAAACGGCTTTAAAAATA 198440 33 100.0 33 ................................. TTTGATGAGCTGGAAATAAACGAATCGGGCGAA 198506 33 100.0 34 ................................. CATTAGAATTCTTGCCAAATTTCATGTTGCTACC 198573 33 97.0 33 C................................ TTTACTTGGATTTCACGCAATAGCCTTTGGTAT 198639 33 97.0 34 T................................ CTAATTGCAACATCATATTAATAGCTCGGCCTGC 198706 33 97.0 34 C................................ GTATCATTCAACCAATCAGACCCAATTTGCGAAA 198773 33 97.0 32 C................................ TATTTGAGCCATAGGCAAATTTTGATTATTTG 198838 33 97.0 32 C................................ GCCCGATTCCGTTGCTATGCGCGCTATCTTGG 198903 33 100.0 33 ................................. TCTTAACTTACAGGAAAGACAAAATGAAAAAAT 198969 33 97.0 34 C................................ TGGACGGCCTTTGTGTTTGCGTTGAATTTGCGCA 199036 33 97.0 34 C................................ CATGAACATGGATCAGATGTGGGGCATACCCGAT 199103 33 97.0 33 T................................ ATGTTTCTTGAAGCTAAGAGATAGGCGTTATCT 199169 33 100.0 33 ................................. GACCTGTATGCGGCGAACATCATCGATGTAACC 199235 33 97.0 33 G................................ ACAACGTAGAAGCCTACCGCAATGAAAACCGCA 199301 33 100.0 33 ................................. AAGAATGAAGCCGCTATTGCTATTGGCGCGTCC 199367 33 97.0 34 C................................ AATTTCAGGCAACGAGGTCAGCGGTAGGAATGCT 199434 33 100.0 34 ................................. TCTGCATCGCTGAGTTTACCAAAGTCGATGCGGT 199501 33 97.0 34 C................................ GAGCGGACAAAAACACCTCTACTTGTTTTAGCAG 199568 33 100.0 33 ................................. GTTTTAAATCTTTTTTGTGTTTTTGTGTTATTT 199634 33 97.0 34 T................................ GCGTAAGACTGGCTTGTATGTCAGCAATGATGGT 199701 33 97.0 34 T................................ TACAATCTTCTGTTGTCGTTCCCTTTAGTATTGG 199768 33 100.0 32 ................................. AAAGTAGAAATCCATTGCCGACTGCAACACGT 199833 33 97.0 33 C................................ ATCCGAAAGTATGCGCGTAAGGCTGATTTAACC 199899 33 97.0 34 G................................ TAGTCGCGGTGTCGCAGGGTAAATGGATTACAGC 199966 33 97.0 32 C................................ TATGTCCTATGAACTTATACCTGAGCTGCAAG 200031 33 97.0 35 C................................ CCCTGCGGCTTCGCGTTCGCGGAGATGTGCATACA 200099 33 97.0 32 G................................ CCCAGTCGGCGTGCCAGTTGTCATTGTCGGCC 200164 33 100.0 35 ................................. CCCCGCGCATGAATAATAGTATGCGGAAAGCCGAA 200232 33 97.0 33 G................................ CACACCACCATCAATTGCTCGCGCTCCAACCGT 200298 33 97.0 33 T................................ TGCAATCCGTATCTGACCCTTGAGCAGAAGTAT 200364 33 97.0 34 C................................ AAGTCCCCCCATGCCGCACGGGTGGCGACAACAG 200431 33 97.0 34 C................................ GCGTCATAGGCGACATACACAGTTGAAACTTGTG 200498 33 97.0 33 T................................ CGCGAAATGGAAGGCTCTTTCGCCACTGGCGAC 200564 33 100.0 33 ................................. TTTGTAAAATAGGATTGTTTGCTGGTTAAGGCT 200630 33 97.0 33 T................................ CTGCCACATGCATGGTTTTGGTATCTGGTCTTT 200696 33 93.9 34 T........T....................... AGACGGGGTTTAAGGTATTGCAGGCGGCGGAAAC 200763 33 100.0 35 ................................. CGATTTGGTCTTGTATTGCTTGGCGCTGACCGGCA 200831 33 100.0 35 ................................. AACGCGGGTAATTTTTGGGCGTATTGCATTGGTCA 200899 33 97.0 34 G................................ AATCATCACATAATGCTTTTATTGATGTTTTAAA 200966 33 100.0 34 ................................. CCCGATGGTCGGCTGACCCAACACATCACGAAGC 201033 33 97.0 33 C................................ CGCCAAAGAGACTTATTACGCGGAATCTTTATA 201099 33 97.0 33 C................................ CGTCGCTGCTTGACCGTGCGTTGCAATCGGGCG 201165 33 97.0 33 C................................ CAACTGACTGGCGGCCACACCGCCTGGGTAGTG 201231 33 97.0 35 T................................ ACTTTCGGCAAAATGCTGCTGGCTCAATTCCGCGA 201299 33 97.0 32 G................................ TTCCAAACTCAACAGACTAATAAAAGGCCGCG 201364 33 97.0 33 T................................ CTGACGATTCTACTGTTGACGGTAAGGTCGTTC 201430 33 97.0 34 G................................ ATAGAGTGCAACAAAAAGACGGGCGTAATTTGCT 201497 33 97.0 33 C................................ AGAAGTTCTTGGGTACCAGTGAGGAACTCACGG 201563 33 97.0 33 G................................ CCTGCATCAGTTTCTAGGCTATCTTCTTTAGCT 201629 33 97.0 33 G................................ CGGCATCGCCATCGGCGACCGCGCGCAGGGCTT 201695 33 97.0 34 T................................ AAAAAACTATTTCAAACCTGACAGCACAAATACA 201762 33 97.0 33 G................................ CGCATGATGGCTATTAATATCAGCTTTATATGT 201828 33 97.0 33 T................................ CGATACGTGCAAAGTCGTTGCCTACTTGTGTGG 201894 33 100.0 33 ................................. GTTTTATCTTAATAGCCATTTTATCCGGGCTAT 201960 33 97.0 34 T................................ TTGCAAGATGCTGTCGTCCATATTGGGGAAGGCT 202027 33 97.0 33 T................................ GTGCAAGAAAAACACCCCAAACATTTGGCTGCC 202093 33 97.0 33 T................................ TTTCCAATAGACAAGCTCGACTGTGAATTTATG 202159 33 97.0 35 C................................ GGTTCCTACTCTGGATAAAGAAGGGTGGTTACAAT 202227 33 100.0 35 ................................. CATACAAATCATCAAATACTATTTTTTATCATGAA 202295 33 97.0 33 C................................ GTCTAAAGTCAATGAATCTGAAGCAAAAATTCA 202361 33 100.0 33 ................................. CTGTCACAGTTTTGTTTGATGGTGGTCTGTACA 202427 33 100.0 33 ................................. CGCAAATACTTGCAACCACCGAAACGCCTCCCA 202493 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ==================================== ================== 108 33 97.9 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTATGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTGGTTCTCATGAAAATGCGGCAGGGTTGGTGAACTGGGCTTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTTGCGCTTTTCTTGTGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGTAGCAAGGCTTTTAAGAGAGGC # Right flank : ATCTGCCACCGTATCTCATGTCTGAGTAGGGACGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTTCGAAGCTTTAGTGAAAGCTGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATTAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGAATCTATATCAATTTGAATTTTTTAGAATTTCAATATGACCCCCTCATTTACTACGCTCATTCCGCCCAAGATAAACTCGGCAATCCCTTGCCTTACAAACCATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTGGGCGAAATGGCGGCTGAGTTTGCCCGGGTATTTGATGCGCAGGAAATTGCCTGCCAGACGGGACAGCTTCATGATTTAGGGAAATATTCAGTTGCCTTTAATCACCGATTGCATGGCGGCCCTTTAGTCGATCAT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //