Array 1 255071-254177 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALQM01000020.1 Streptococcus agalactiae CCUG 25532 ctg120001210246, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    255070	    36	 100.0	    30	....................................	TTGATATTACTAACGAGTTAGTGACAGTTA	
    255004	    36	 100.0	    30	....................................	TAGCTACCGAAGCACACTTTCGTTTGCGAC	
    254938	    36	 100.0	    30	....................................	CCAAATTTTGAAGAGAAAAAACTAAAAACT	
    254872	    36	 100.0	    30	....................................	CAAAGAACTTTGTGTCTCAATTTGTGAGCT	
    254806	    36	 100.0	    30	....................................	ATCACTTCTTTCGCTTCTTCAATATTCATT	
    254740	    36	 100.0	    30	....................................	TCTTGATAATGAATTTGAGTCAGCAATACA	
    254674	    36	 100.0	    30	....................................	CGCTAAAGCTTGCCCTAAAGTTACTGTTGA	
    254608	    36	 100.0	    30	....................................	TAGATTTCTACGAACAAGTGGATTGAGAAA	
    254542	    36	 100.0	    30	....................................	TCAGTCAGTTAAAGACACCGTTATTAATAA	
    254476	    36	 100.0	    30	....................................	AGGTCCTATGGGGAGAAAATTAAAAGTGGT	
    254410	    36	 100.0	    30	....................................	AACTGATAATCTTAAAAAAGTAAATGTGAC	
    254344	    36	 100.0	    30	....................................	TTGACCTTTTACGTTAACAGTCCATTTTGA	
    254278	    36	 100.0	    30	....................................	AACCTCATTATTAAATTTCACTACTACTGC	
    254212	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  TCTTTTAAAGCAGTTGATATCAAGACATCTGTTTTAGAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGATGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCGTTAATACTTGCAAGCTTACAAGGGAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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