Array 1 9-2868 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000164.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 9 30 100.0 36 .............................. GTCAGCAAGCCATCCTAAGAGTGCTTGCCATTCGGA 75 30 100.0 34 .............................. ATTGTGTCACCAATGTACGCCCAATCCATTACTG 139 30 100.0 38 .............................. AGTGACACCCGAAGCAGCTCCGACCGGAGAGTTTCCGG 207 30 100.0 36 .............................. CTGTGCCAGCGTCCATGCAGCGAAAGGTGTCTCGCC 273 30 100.0 36 .............................. CGCGTACCGGCCTCCAGCTCGGCCACGCGGGCGCGG 339 30 100.0 39 .............................. GCGCCACCCCGGAGACGTCACAGGAGGCGGACCGGTGAG 408 30 100.0 35 .............................. CACTGCGGCGGGCAGAGCCACCACAGGCGGCCGTA 473 30 100.0 35 .............................. TCGAACCGGCAGACTGGTTGACACGTACCCACGCC 538 30 100.0 36 .............................. TGAAACCCGTGGTAGCAGCCCTGGAACTTGATGATC 604 30 100.0 38 .............................. GCGAGGGCCAGGCGCTCGGCGTGCTCGGCGCGCTCGGT 672 30 100.0 36 .............................. ACCGTGGGAGCACCGGCCGTGCCGTGCGCCGCCGCC 738 30 100.0 35 .............................. GTTGTCCAGGAGGCTCCTCCTCCGGCGGACATCGC 803 30 100.0 36 .............................. TGCAGCGTCCGGGCCTTGGCGGGCCATGACGCGGTG 869 30 100.0 35 .............................. GCGAGCGAGGTCATGACGTCCAGCACGGGGACCCC 934 30 100.0 34 .............................. ATGCTGTCGTTCCCGGACATCGCCCCCCCCGCTT 998 30 100.0 34 .............................. GTTGCGGAGTCGGCCGCCGCGCGCGCGGCGTCGA 1062 30 100.0 37 .............................. GGCATGGCGCCCAAGTCACGGCCGATTTGCGGCCCGG 1129 30 100.0 36 .............................. TTACGCACCGTGATGTGACTCAGCGTGACCGAGCAA 1195 30 100.0 36 .............................. TCGCGACCACGAGCACGCCGGCCGGCTCGGTCAAGC 1261 30 100.0 36 .............................. GTTGTACTTCGGCCTCCCGGCCACGGACGCGCAGGA 1327 30 100.0 34 .............................. AGGACTTCCGTGACCGTGTCGGTCGCGACCCCAA 1391 30 100.0 34 .............................. ATGTGCTGGCGTCCATCCTGGAGCGAGAGCAGGA 1455 30 100.0 34 .............................. CTGAGTCGCACCAGCGTGGCTCTCCAGAGCGGCG 1519 30 100.0 35 .............................. CGGTGGTGGCGCGCAGGAGCCACGCATGCGCGGTG 1584 30 100.0 37 .............................. CCCGACACGCCCGACACCGGCACCGGTAACGCCGGTA 1651 30 100.0 38 .............................. CCGCCGGGTTGCGATTCCGTTCATTCCGGGGCGTCCGG 1719 30 100.0 34 .............................. GGGATGCGCGTGCCCTGTGTGCGTGTACGCCGTG 1783 30 100.0 34 .............................. CGTGGTGGTCCCCGTGCGCCGACTGTGAGTGGTG 1847 30 100.0 45 .............................. CGCGGGCTGCGGACATCCGCATGTACGTCAAGCGCGAGGTCCGTG 1922 30 100.0 35 .............................. TCACGCTCGGATGGATGCCGCTGCCGCGGTGACAG 1987 30 100.0 36 .............................. CCGGCCGGGGGGCGCCGATGACGGGCCTGGCGGCCG 2053 30 100.0 35 .............................. AGTTTCCATTTACCGGTGGATGTCTTCTCAGACAG 2118 30 100.0 34 .............................. GATCGACAGCATCAGGGAACGACGCCTGGACCAC 2182 30 100.0 36 .............................. ACGTCCTTGACGAGCACCAGGCCGAGGTCTACGCCG 2248 30 100.0 36 .............................. ACCCGACGAGTCCGGCGCTCACTGTTCAGATGGCGT 2314 30 100.0 40 .............................. AGACCGGCCTGCGCGTAGGAGAGCAGGTTGTCCTGCTGCG 2384 30 100.0 37 .............................. CCCAGGCGATCGCCGGCCTGGCCCACCTGGCGGACGG 2451 30 100.0 34 .............................. CGATCCTGCCGGCGCTTCTGCCGCTGATCCCGAC 2515 30 100.0 36 .............................. CCGGTCTCGTTGGCCATCTTGGCGAGGCGACCGTGA 2581 30 100.0 34 .............................. ATCATGCCCGCGACGTCGCGCAGGGCCGCGGCGA 2645 30 100.0 36 .............................. CTGATCCGTCAAGACTGGTAACAGGCCCACCCGCGG 2711 30 100.0 33 .............................. CATGGGAAGCGCGTCGGAAGCGGATCCGGCGTG 2774 30 100.0 35 .............................. GTGAGCACGTCATCTCTCCGGCGTCTAATCCATAG 2839 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 44 30 100.0 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : ATCTTCGGG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 61-3583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000166.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 61 30 100.0 36 .............................. CCCGGCCCGCGCGGCTGGCTGGCCCTGGCGAACCAC 127 30 100.0 35 .............................. ACTGGACCGAGCTGGGGCAGCGGATCGGGGAGCGC 192 30 100.0 37 .............................. TGGTCCGCCTGCGGGTGGTTGGCCTGGTGGACTCGAC 259 30 100.0 36 .............................. GCGGTGGCGCGGTAGTGGGCCAGCAGCGCCGCTGTG 325 30 100.0 37 .............................. AGGTCGGGCGCGGGCATCCCGCGCCGCCAGAACACGA 392 30 100.0 35 .............................. CCATTCGCTCCAGGGAGATGACGCCGACTTCTCCG 457 30 100.0 34 .............................. CTCCAGGGAGCCCGCCAGGTGCGTGCGGGCGTCT 521 30 100.0 39 .............................. GTACTGTTCATGGTGCATCCCCTCCGTTCCGTGGGTGCA 590 30 100.0 36 .............................. GTGTGGATGGTCTGTCCGCTGGCGATGTCTTGGATC 656 30 100.0 36 .............................. GGGCCTCGCCCAGTCGGGCGAGTTCCGCGGGTCGGG 722 30 100.0 35 .............................. GGCCGCACCCAGTCCGGGACGGCAACGGTCGTGGG 787 30 100.0 36 .............................. CCGCGCTACTCGACCGCGCCCGATCCATTCTCGGCA 853 30 100.0 38 .............................. TCGCCAACCCGGACCTGACCCTGGTGGCGACCGTCCAG 921 30 100.0 37 .............................. ACGATTGCAGTGGACGCGTAGATCGACGTCGTGCCCG 988 30 100.0 38 .............................. CTGGGGACGCGGTCCCCGGGCAGGAGCTCCGGTACGAC 1056 30 100.0 34 .............................. CCGACCGTTTCAACGATCCGACTACCGGGGTCGC 1120 30 100.0 36 .............................. GCCGCGGCAGAATTGATAGTGCAGCCCGGGAATCCT 1186 30 100.0 37 .............................. ATCTCCCACTCGTCGCCGGCCGCGCCCAGCAGGGCCG 1253 30 100.0 36 .............................. GCCACGCGGGCGGCGTACGCCGCCTCAACCGCCGAG 1319 30 100.0 36 .............................. CCGTCCGGCAGTGGCGGCAGGAGCTCCATATCTCCT 1385 30 100.0 34 .............................. TTTCCCGGGGCCGCTCCCCGGGGTGTGACTTAAC 1449 30 100.0 36 .............................. GGCGGACCACCCCGATCTGGGTGCCGTCCAGCGCTA 1515 30 100.0 35 .............................. GGGAGCAGGACTGCGGGTTGCGCTTCTGCTCGCCC 1580 30 100.0 37 .............................. CCTTGACAGCATCCAGGAGTTTCCGACTGGTCTCCGG 1647 30 100.0 35 .............................. CGCCGTTGAGCGAGGAGGGCTGACCCGATGCCCTG 1712 30 100.0 36 .............................. CAGTCCCGATGAGCGGACAGCCGGGCCGCAGGGAGC 1778 30 100.0 34 .............................. GTGAGCTGCTTTTTCGTCCGCCAGCTCGCGCCGC 1842 30 100.0 36 .............................. GCCGCGTGCGCCCGCAGCGACGGCCAATCCCGCCCG 1908 30 100.0 35 .............................. AGGATCGTGGCGACCCGATTGAACAGGTCCTGCAT 1973 30 100.0 36 .............................. CCCGCTGCCTGCGTGCCGACCCGGCGGCGTTCCTGC 2039 30 100.0 35 .............................. CCGTGGAGGACAACCAGGGCGGGGACATGTGCGCG 2104 30 100.0 35 .............................. ACGGGTCGCATCAGGCGCATCGCCAAGCGGCTCCG 2169 30 100.0 33 .............................. GCGGACAGCTCGACCTTGTTGGATGCGCTTGTT 2232 30 100.0 34 .............................. CGTCGAACGCGGGCAGTGCCGTGTTGGCGTACTG 2296 30 100.0 37 .............................. GTCTACCGGAGGCCGCCCGTGCGGTCGGCACCTCCTA 2363 30 100.0 36 .............................. GTGCCGTCCCGCCAGCTCCAGGCCACGTTGACCGCA 2429 30 100.0 36 .............................. TCGGGCGTCAGCCCGGCCCACACGCCGTCCTCGGCG 2495 30 100.0 36 .............................. AGGTACCGGTTCCCGTCGAGATCCCAAACGTAGGCG 2561 30 100.0 34 .............................. AGGCGGACAAGAAAGCGATCTACGACGCGGCCAT 2625 30 100.0 36 .............................. TTCAGGTCTACGGCTGGGATCTCAAGCGCCTCGCGC 2691 30 100.0 36 .............................. AGATCAGTGACCCGAACGCGCCGATCGGCGTCCACC 2757 30 100.0 36 .............................. ACGACCCACTGAAGGCCGGCAAGGAAGCGTCCTCGC 2823 30 100.0 36 .............................. TTACCGGCCAGGACTGGGAATACAAGATGATCCAGG 2889 30 100.0 38 .............................. GCCCGGCCGACCAGCACCCGGCACGTGAAATCGACCTG 2957 30 100.0 37 .............................. GTGACGGCATACTGTCCCATCAGACGGGACAGGAGGC 3024 30 100.0 36 .............................. TTGTCCCAGAAATACTCCTCTCCTTCCTCCCTATCC 3090 30 100.0 37 .............................. CCGCCCGGCGTGGCCCGGACGTACCGGGCCTCCACCG 3157 30 100.0 36 .............................. GGAGACGGCCGAGATCTGCACTGGCGAGGACGGCGC 3223 30 100.0 38 .............................. GTGGTCGTCCACGAAGTCATGCTGCCTCCGTTGATGAG 3291 30 100.0 36 .............................. GCGCTGTGCTTGTAGATCTTTCCGGCGCCGTGGCAG 3357 30 100.0 35 .............................. AGTCGTACTGGCTGTTGCCGCGCCCTTGCGCCCAG 3422 30 100.0 34 .............................. CGGTCCACGTGCACTGGTAGTGACCCGTTACCGG 3486 30 100.0 38 .............................. TGCTGATCAGAATGTGTGTGATGTAGACCACATGATGA 3554 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 100.0 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : GTGATCATCCCTGGAGGGATTGAAACAGCAGTCGCCGACGTGCTCGACCGCGGCGAGCTGG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 1203-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000216.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1202 37 100.0 35 ..................................... GTCGTATGCACGGAAGCGACTTGCGTCGGTCGGAG 1130 37 100.0 34 ..................................... CGCCAGGGCCGCCACCATGACGGGATTGGCCTGG 1059 37 100.0 35 ..................................... GCCAGCTACGCCGACATGTTCGTTGCGAAGGACGG 987 37 100.0 35 ..................................... TTCCACGGCTTGGACAGCGGACAGTCGACAGCGAC 915 37 100.0 34 ..................................... CTTGCCGTGGACACGCCGTATGTTGTGATCCAGC 844 37 100.0 35 ..................................... CCTTTGGCCATCGATCTCTACGCCGTCGTGGTCAC 772 37 100.0 36 ..................................... ATCTCGACGCACCGGTCGAGATCTGCATCGAACGCG 699 37 100.0 35 ..................................... GTTCAGGAGCAGGTGATCCCACTGTTCACCCGGGC 627 37 100.0 35 ..................................... CAGAAGTTGGGCCCGATCCTGGAGGACGAACTCGA 555 37 100.0 34 ..................................... ACGTGGTGATCGCCACCGGCCGACCGGTGGCCAA 484 37 100.0 36 ..................................... TCCACCCTCGTCCCATCTGCGCGTTACTCATCGGCG 411 37 100.0 36 ..................................... TTCAGCGGTCATCCATGTGGAGCTGAACGTTTCGGA 338 37 100.0 35 ..................................... CACGTCACCCCGCCCCGAGGCAGATCCACGTCGAG 266 37 100.0 35 ..................................... TACCGAACCGACAAGGCGACGATCTACGACCGACC 194 37 100.0 34 ..................................... CAGTAGCCATGATCGGGATGTCCTTTCGGGGAGC 123 37 100.0 34 ..................................... TTCGGACGGTCCGATCGAAGGGAACTGTCGTCCG 52 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 100.0 35 GCGGCACCGGGGCCCCGGCCTCGGTGAGGATCACAAC # Left flank : ATCAACCGACCTGCCATTCACCTTGACTCGCCCGCCAGTCGCCTCCGCGGCGAGCAGGCCCTCCTGCCACAGGCATGACGCCTTCCCCACGTCATGCGCCAGCCCTAGAAACCGTCCCAGTTCCCCCGCGCCGAACGCCGAGGCGAACCGTGCGGCAAGATCCCCAGTCCCAACGAGATGATCGACCAGTAGATGCCGCCTGCCGGCAGCATTCATACTGTGCGCCCACATCACAACCACGCCCCCGTAGCCCGTGTCCCCGCTCTACGCGACGACCGCATGCGAATCTAACAACACGGGTACGACAGAATTAGGGGGCTCCACGGCGCTCAGATCGCCGGCCGCGAACCCAGCCGCAAACCCACCCCCGATCTAGGAATCCCCAGCTCCTCCCAGAAGGCAGGAGCCCCCGAAGCCAAAAACGGGATGAAATGGACACCCGTCGCCACTCCTACCCACGCGCATGCACTATAGGAAGCCGAATGCCCTGTTCAAGCAGG # Right flank : CCTCCCGTGCCTGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGCCCCGGCCTCGGTGAGGATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.80,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1542-3152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000165.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1542 30 100.0 37 .............................. GCGGCGGTTGGCCGGTCCATGGTCGGCCCCCTAGCCC 1609 30 100.0 37 .............................. GTCGTCCCGGTCTCCCCGCCGGCGGCCGGCGAGGCTG 1676 30 100.0 37 .............................. GAGTGCGCGTGCAGCCGGCCGTAGGAGTCGTCTTCTG 1743 30 100.0 35 .............................. GTGCCACAAGGGCCGGCACGGCCACGCCGCCACGG 1808 30 96.7 36 ...................A.......... TCGTTCTCATCAGGCTGCGGCATTTACCGGACCCAC 1874 30 100.0 34 .............................. GGGAACACGATGACGTCGTCGGGGCTGTTGACGA 1938 30 100.0 35 .............................. GCTGTGGTTCCAGGCCACCCGGCCGGCCGGGTCCT 2003 30 100.0 36 .............................. AAACACCGTTGCCGGTCTGCGCGCTGGACAGGTTCG 2069 30 96.7 39 .C............................ TGGTCCTGCACGAGACCGATCAGGGCCGCCGGTTGGCTG 2138 30 100.0 36 .............................. GCCGACCGTCCGGTGAGCCGCAGCCGTTCCGCCTCC 2204 30 100.0 38 .............................. CTTGTCCGATCGCTCGCGCTACCGCTGTGGCATCCCGT 2272 30 100.0 35 .............................. CCCTGTGGGCGGCTATGACCGCGCGGCAGGAGGCC 2337 30 100.0 33 .............................. GGTTGAGCCCGGCGTAGAGGTCGCCACCAGCGG 2400 30 100.0 35 .............................. CCACGGCCCTTGATGCCATGCCCAGCGTGGCCGTA 2465 30 100.0 36 .............................. CCGCGCTGGCCCGGGAGCACCGGGCCGCCCTTATCG 2531 30 100.0 38 .............................. ATCGCGAACGCCACCGGGTCCAGTGCCTGCGACTCGGC 2599 30 100.0 35 .............................. CCGAGCACCTCGCTGCCGACCCGCCGCCGTCGATG 2664 30 100.0 37 .............................. ATGTCGAGCGCGGTGCACACCGCCTCGTACTGCTCAC 2731 30 96.7 36 ..........C................... AAGACGTACCAGCCGCGCGACGAGGAGGGCTACCAG 2797 30 100.0 35 .............................. TGCCTCAACAACCTTGGCATTGCTGGCCATGACGC 2862 30 96.7 34 ............T................. CTTTAGGCGGCGGGGTTGGCCTGGCGTGCCGCGA 2926 30 100.0 37 .............................. ATATATGGACGACGGCCAGACAGGCCATCGTTCCCAT 2993 30 100.0 35 .............................. AAACCGACGCGGATTTTCTTCAAGTCCACGCCGAA 3058 30 100.0 35 .............................. GCTGGCCGGCGCCCGGCACCGTGATAATGGCGCCG 3123 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.5 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCCGTGATCATCCCTGGAGGGATTGAAACCGGGCGCTGGACCGGCTGCCGCCGGAGCCGGAGCCG # Right flank : ACCAGCGTCGTCACCGGGCCATGGCGATTGGCGGTCCGTGATCATCCCTGGAGGGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 6-2907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000239.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 6 29 100.0 32 ............................. AACCGGTAGGCGTCACCGGCCGTCGGGCACAC 67 29 100.0 32 ............................. CCACCGCCTGCGCAGGTCGGGCAGGTCTCGCG 128 29 96.6 32 ............................C GATCTGGCACCAGCGCTGAAGGCCACGTTCGG 189 29 100.0 32 ............................. ATGGTGTTGACCGCTGCGCATCTCACGCTCAG 250 29 100.0 32 ............................. ATCCTTGTCTTTGTCCTTCTTGTCGCGCGCCA 311 29 100.0 32 ............................. TAGCAGCACGTTTGCCCTTGACGTCTGCATAC 372 29 100.0 32 ............................. GACCTCGGCGGTCACGTCCAGGCTGTCATTCA 433 29 96.6 33 ............................A GGAGATCTCATGTCGCCCGACACCGTGTATGAC 495 29 100.0 32 ............................. GGTCGATGCGGAACCGTTGGATCTCTCTTGGC 556 29 100.0 32 ............................. TTCGCTGGCGATGTCACGCGCCAGATGCGTGG 617 29 100.0 32 ............................. CCGAACGACACGCCGTCGGCCAGGCATTCGTC 678 29 100.0 33 ............................. GGCCGGCGCATCCGAGCCGGGTTCGGTCACCGT 740 29 100.0 32 ............................. ACTGCGCCGCGCACCCCCGGGCCGGTGGACCC 801 29 100.0 32 ............................. CCGGGCGAATGGTATGCACCCGACGCGGACGG 862 29 100.0 32 ............................. ATGGCGGCAGCCTCGCCTTCGGCACGTAGCCG 923 29 100.0 32 ............................. CTGGTCGACGGCGCCAGGTTCGCGGCCGAGAC 984 29 100.0 32 ............................. CATCCGCGCCTCCACAGGGCGGGCGGCCTTCC 1045 29 100.0 32 ............................. TCTGCGTGGGGGCGCGCGCTGCGGGTGGCGTT 1106 29 100.0 32 ............................. TCTGCGTGGGGGCGCGCGCTGCGGGTGGCGTT 1167 29 100.0 32 ............................. CCGGGTGCGGCGGTGCAGGCGCGCAAGGTTGA 1228 29 96.6 33 ............................C GCGGCAGGGCCTGGCACGCAAGACCTTCGAGCT 1290 29 96.6 32 ............................C AGGGCAGCGAACCCGAACGGGATCTCGGCGCC 1351 29 100.0 32 ............................. CTCCATGGAGGTTCTCTCCGCATCCGGAGGTC 1412 29 100.0 32 ............................. TACATCGGGACCGGCAACCAGCGATCGTGGTT 1473 29 100.0 32 ............................. GTCGAAGCGGCGAGGCCGGGCCGGGCGAGGGC 1534 29 100.0 32 ............................. CTGGCGATCTGGATCACGAGCAACGCCTTCTC 1595 29 100.0 32 ............................. GTTGAGGACCGCCGGCTGTCTCGACGCTGATC 1656 29 100.0 32 ............................. TCCGGCGCAGGGACGGCCGGATGGGCCGCCGG 1717 29 100.0 32 ............................. CGGGCCATCGTCCGCGCGGAGCTGGCCTCGTG 1778 29 100.0 32 ............................. TACAACTACTCGGCGGAGCCCACGACCGCGAC 1839 29 100.0 32 ............................. TCCCCGCGGGAGACGGCGACTTTCGACATGTC 1900 29 100.0 32 ............................. TCCCATTTCCCTCTTCTTTCGCTTCGGACGCC 1961 29 100.0 32 ............................. CGTGCGTAGCGGCGTTGGGCAACGCCACGGAG 2022 29 100.0 32 ............................. GGATAGTTCGCGAGATCGGGGACCCCGACTCC 2083 29 100.0 32 ............................. CGGACCCAGGGCATAGGGCTACTCCTCTTCGG 2144 29 100.0 32 ............................. ATTGGGCCCGTGCTCAGGGCTACGGCCCAGAC 2205 29 93.1 35 ...........................NN NNNNNNNNNNNNNNNNNNNNNNNGGCCCGGCTCGA 2269 29 100.0 32 ............................. CAGCGCGAGGCGCTGCTTCAGGGCCTGATGGA 2330 29 100.0 32 ............................. ATCACCGATCTCGTCCACCACGCGATCCAAGA 2391 29 100.0 32 ............................. AAGATGCCGAGTCACGTTGCCTGCCGGACGGC 2452 29 100.0 32 ............................. CTGATCGGCGCCATCGACACCGCGACCGGCCT 2513 29 100.0 32 ............................. CGGGGCCGTGTGGCGTGCGGGGCTACCGGCGG 2574 29 100.0 32 ............................. TCGTCTCGGCCGATCCGGTCGCGGATGCGTGC 2635 29 100.0 32 ............................. GACAGGGGTATGTCCGGGACGGACGTACGTAC 2696 29 100.0 32 ............................. CGCCGGGGGGCGCGCCGATCGTCACCCAACAG 2757 29 100.0 32 ............................. ACCCGCTACGCGCTCGGGGGACGTCGGTCCCG 2818 29 100.0 32 ............................. ACATCAACATCGGCAAGAGCAAGGCTCCGCTG 2879 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 48 29 99.6 32 GCCGTCCCCACGCCCGTGGGGGTGATCCG # Left flank : CAAGTG # Right flank : TCTTTGCGCCTGAGCAGCTCCAGATCGGAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 606-2280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000240.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 606 29 100.0 32 ............................. CTGGACCAGGGACAGCGCCGGCTGCCGTAGGC 667 29 100.0 32 ............................. CTCATCCCCGGACGGGCCTTCCCCCAGTGCGA 728 29 100.0 32 ............................. GATCAGAGGCAACCCTAGAAGGCTTGATCCAA 789 29 100.0 32 ............................. CCGGGACAGTCCGCCCCGTTCATCATCGTCAA 850 29 100.0 32 ............................. GTCGTCGATGTCAAACCGGTCCCACACCGGCG 911 29 100.0 32 ............................. GTCAGACATCAGCGGGCACCTCATCCGGGCTG 972 29 100.0 32 ............................. CCCCGTCTCAGCGCCGAGCTGGCCGCGATGGC 1033 29 100.0 32 ............................. GTCATTGCCGCTGAGCGTGAGATGCGCAGCGG 1094 29 100.0 32 ............................. GCCATGTGCAACCGCTGTCCGGTCGAGACGGA 1155 29 100.0 32 ............................. GCCATGTGCAACCGCTGTCCGGTCGAGACGGA 1216 29 100.0 32 ............................. GTGAGCGCCGATGTCTGATCTCCGCACTGTTC 1277 29 100.0 32 ............................. CTGACGCCCGAGGCGGCGATCACTGCCGACGG 1338 29 100.0 32 ............................. AACGACGACGTCGGTCAGATCCAGATCATCCC 1399 29 96.6 32 .....................A....... CCGTGACCGACACCGAGCAGCAGCGCAAGTGC 1460 29 100.0 32 ............................. GCGCCGCCACCATGGCAGTCAGCCGGCGCGAC 1521 29 100.0 32 ............................. CGTCCGTCATGGTCATGGCGGGGGACCGGCAC 1582 29 100.0 32 ............................. ACGCGCAGGCGTGTCATGGGCTTGCAGGCGTC 1643 29 100.0 32 ............................. CCGTCCGGACCGTCGTTGTCGATCCACGTCGT 1704 29 96.6 32 ............................C CCGCCGATCGCGTTGATGACCTGAGCGGACGC 1765 29 100.0 32 ............................. ATCTCAACATCGCCAAGGACAAAACGCCGCTG 1826 29 100.0 32 ............................. GATGATCTGCGTGGCCATTTCGGGCTCCCTCG 1887 29 100.0 32 ............................. GCGCTCGACGAATTTCATCGTCACACCAAGGC 1948 29 96.6 31 ............................C GAACCAGGCGTGTTCGAACCAGCCGGCGCAC 2008 29 100.0 32 ............................. CGGGACGAGGCCGCCGACCTCGGCAAGGCGTT 2069 29 100.0 32 ............................. CGCCGGTATTCCTGTTCCTCCGTGCAGATCAC 2130 29 100.0 32 ............................. GCATGTCTCGGCCGACTGCCTTTGATTGGCTC 2191 29 100.0 32 ............................. AAGCGGTTCCGCTCCTCCTCCAGCATGATCCC 2252 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GCCGTCCCCACGCCCGTGGGGGTGATCCG # Left flank : ACGCCCGTGGGGGTGATCCGTAGGGCGAGGCATGTTGCACGCCCCACTCATGGCCGTCCCCACGCCCGTGGGGGTGATCCGGATCGCGCACCCTCAGACGTGAGCGGTCCCAGGCCGTCCCCACGCCCGTGGGGGTGATCCGACAAACCCCACTGGCCTAGCGCGCCCTCGACCGCCGTCCCCACGCCCGTGGGGGTGATCCGCACTCGCGGCCCCGCTCGCCCGCAAGGGCGTCGCCGTCCCCACGCCCGTGGGGGTGATCCGGCACCCGGCGAGCTGGAACTGCGCAGCAGCGTGCCGTCCCCACGCCCGTGGGGGTGATCCGGACACCGCGAACGCGCTTGCGCCGAGGATGGCGCCGTCCCCACGCCCGTGGGGGTGATCCGTACCGGCCGACATCGCCATNNNNNNNNNNNNNNNNNNNNNNNNNGCCGGTGGCGCCGTCCCCACGCCCGTGGGGGTGATCCGAATCCTCCTGCCCGAGCATGCCTCCGTCGCAG # Right flank : GCCGGCGACAATCTGGGCCCATTGCGCGTCGACGCCGTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGACAATCTGGGCCCATTGCGCGTCGACGCCGTCCCCACGCCCGTGGGGGTGATCCGCAACGGCGCGGCTGGTTCGCGGGAAGGTCTTTGCCGTCCCCACGCCCGTGGGGGTGATCCGTACACGGATGTGCTCAAGATGTACGCCCGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22575-26170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000301.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 22575 30 100.0 36 .............................. GATTGCACCCTGCACCCGGACTCCGCCACGGGATAC 22641 30 100.0 34 .............................. ACCAGCGGTATCGGCTTGCCGAGGTTGTCTCGGC 22705 30 100.0 34 .............................. ACGGACTCAACAAGGCGCTCACCGGCAGCTCCAC 22769 30 100.0 36 .............................. GTGTCGGGTCGCCTCCGGTCGGAGTGGGCGTGGGTG 22835 30 100.0 35 .............................. ACGTGTAGGCATTACGCGCCTCACCCAAGGGGGGC 22900 30 100.0 37 .............................. GACCCGGGGCTGGCCATGCTGCTGCTCGGCGTGGCCA 22967 30 100.0 36 .............................. CCGCGCACGAGCAGGCCGGAGGAGCCGAGCTGTGAA 23033 30 100.0 35 .............................. CGGGCCGTCTTGTACGCCTCGACGCTGGCGCGGGT 23098 30 100.0 36 .............................. ACCTGCTGCGGAGTCGGAGCGTCCACCAGGGTGGCG 23164 30 100.0 36 .............................. CGACCAGCGTTGCCGTTGCCATGGACGCCGCCGGCC 23230 30 100.0 36 .............................. CGGCTGGCACCCGACCGGCGAACCGGCTGGCCCGGC 23296 30 100.0 36 .............................. CGGGCGACGCGAATCTACCCGCCAACTGCGGCGTGG 23362 30 100.0 34 .............................. GTGGCTACGAGCGACGGATCTCTGGGAGCGTGCC 23426 30 100.0 34 .............................. TCGCTCCCCATGAGCGCGTCCACATAGCGCTCCA 23490 30 100.0 36 .............................. TGGATGTCCGGGCGCAGGCCGAAGCTGCGGACGCAG 23556 30 100.0 34 .............................. AGGTCGTTCATGCGGTCGCGCTCGCCCGTCTGAC 23620 30 100.0 36 .............................. CCTCCCGCTGGTAGGGCCGCAGCGGCAGTGCCCCGC 23686 30 100.0 37 .............................. GCGACCGACTCGCGCGTACCGGCCTCCAGCTCGGCGA 23753 30 100.0 35 .............................. GTGGTGTCGAGGTGCCCGCCGGGGACCATGCGCTC 23818 30 100.0 35 .............................. CGGCGTAAATCCGTGCCAGGTCCCGGAACACGACG 23883 30 100.0 40 .............................. CGCACTGCGTCCCGCGACACGACCAGGCACAGCCGGCCCT 23953 30 100.0 36 .............................. GTGAGCGGCCCGAACCGGCCGAGAAGGAACGGCGTG 24019 30 100.0 35 .............................. GTGCCGTGAGTGGCGTTGTGCGTCTCGATGGCCTG 24084 30 100.0 37 .............................. GACTTGCGGCTCTGGCGGTCGTAGGTCCCGATCTCGG 24151 30 100.0 34 .............................. ATCGCGGCCTGGACCATCGCATCCGTGACCGCGA 24215 30 100.0 35 .............................. ATGTGCGCGTGCACAAGAACATCGACGAAACCAGG 24280 30 100.0 35 .............................. GTGTCCCGTCCGCTCCGCCCCTGGCAGGCCCGCGC 24345 30 100.0 35 .............................. TGTGTCCAGCCATGCCGCTCCCAGGCCACCGCCTG 24410 30 100.0 37 .............................. TCCACCACGCCGGCGTCCTTGCGGCATTCCACTCCGG 24477 30 100.0 37 .............................. GCGCACCGAGCAGCTGTTCCGGCTGCCCCATGCCGAG 24544 30 100.0 37 .............................. TATATTAAAGAATAACGTCCAAGCGATTTGCAGACAC 24611 30 100.0 36 .............................. GCTGTCGCCCTGTTCGGTCGCATGATCCAGCCGGAG 24677 30 100.0 34 .............................. GAGCCCAATTAGGGATTGGTGTCCCCGTCAGGAG 24741 30 100.0 34 .............................. GGGTTGTCCGGTTCCCAGCGCATGTGATGCCGGT 24805 30 100.0 37 .............................. AGGTGCTGGCGGACGGTGGCTTCGTCGAGCTCACCGG 24872 30 100.0 35 .............................. TTGACCTCTACGACGGTGCAGGTCGGGTTGCTGTA 24937 30 100.0 37 .............................. ACGAATGCCAGGAACTGTTCAGTAACAAGATCCTGAA 25004 30 100.0 38 .............................. GCGACGCTCCACACGCGCTGTCCGCCGCGGCGGTAGCG 25072 30 100.0 36 .............................. GCATTCACTACAAGCGTAGTGGGCCATTAGTTGGCG 25138 30 100.0 36 .............................. GCGGGTGGCACTTCCTCGGGCGCGGACGGCAGCTCG 25204 30 100.0 35 .............................. CCCACAATCCTGCCGCGAACATTTCGACACCTACG 25269 30 100.0 36 .............................. CGGGCCGCCGCCACGAGCGGGTCATTGGTCATACGG 25335 30 100.0 36 .............................. AGTCGTGCTAGCCGGCGCAACGGATCTGAGGCCCAC 25401 30 100.0 38 .............................. GTCTCGCCGTGGACTGTGAAACCGCGGGCGTCCGTGCG 25469 30 100.0 36 .............................. ACGGCGGCGTCCAGCCGCGGCGTGGCCTCGTCCGGC 25535 30 96.7 36 .................A............ GACAACCAGTAAGCGCGGACTCCGCACATGTGGTCG 25601 30 100.0 35 .............................. GCAAGTCCGCGTTAGCGCACCGGCTGATCACCGGG 25666 30 96.7 36 .............T................ AGCGCATCTATCGGCCGCTCACCGACCACCCCGAGT 25732 30 100.0 37 .............................. GCGCGGTAGGCGTCGGTGCGGCCTTCGGTGCCGACAC 25799 30 100.0 38 .............................. GTGAGCAGGCATTCGGAGTAGCCGAGCGCCCTGCTCGG 25867 30 96.7 38 .........A.................... TCCTGCCCGGCAGCGGCAAGAGCACGTGGGCACGGGCG 25935 30 100.0 40 .............................. TAGATCACCAGGCCGCCGTTGGGAGTCAGCGTCCAGCGGT 26005 30 96.7 37 A............................. ACGATGACGACGAACGCAGGAACAGACGAGTCGACCG 26072 30 96.7 39 ................A............. TTGGCGAAGGACCGCCGTTTGCTGGTGGTCCAGCTGCTG 26141 30 96.7 0 C............................. | ========== ====== ====== ====== ============================== ======================================== ================== 55 30 99.6 36 GTCCTCATCGCCCCTACGAGGGATTGAAAC # Left flank : TGAAGCACCGCACGCTCGGCCGTCCGGTCGCCTACGACGAGCTGCTCTACCTCGAGGCGCTGAAACTCACCCGCACCTGTCTCGAGGGCGAGCGCTACCAGCCGTTCCGGATCTGGTGGTGACCCATGTATGTGATCGTCGTCTACGACACCGCAGCGGAACGCAACAGCAAAGTCCTCAAGACCTGCCGCCAGTACCTCCACCACGTGCAACGGAGCGTGTTCGAAGGTAACCTCAGCCCCGCGCAGCTCCTCCGCTTCCGGCGGCGTATCGAAGCCGTGATCGACCACTCGTACGATCACGTCCTCGTCTACACCCTCCCGCCCGGTGCGGACGTCGTCCGGGAGAGCCTGGGCGCCGGATGGGCGGCCCCAACTGACATACTTTGATCATGTGTTTGCAGCGGACCCCCGCGTGGTGATGTTCGACCGGAGGTTCGCTGCAATCCGACCCCTCACCGGGGCCTCGACACGCCGTCCGACCTGGGCGTTTATACTCGG # Right flank : CACCTTGGTGTCGATGCTGGCGGCCTGCGCCTGCAGCGCTGCCTCCATCGTTTTTCCTTTCTTTCTTGGTCTTGTCGATGGGTGTGTGAGTGGCGCGTCGGCGCTTGAAGGAAGCCCGGCCGGAAATCGGGTCAGGGGGCGGCCGGTGTGTCGACCATCTCCGGGGGCTCGAATACGCGGACGGGTGGGGCGTCCGTACCGAGCGGTTCCACCTCGACCAGGGCGTGCTGGCCGGTGCAACCCTGGGCGAGCCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 2899-2144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000032.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2898 37 100.0 35 ..................................... ATGGGGTTCGCGTCCCGGCCGGATGTGCGACGGTC 2826 37 100.0 35 ..................................... ACCGACTGGGAGGCATACACCAACGGGCGGTACAC 2754 37 100.0 35 ..................................... CCCTCGAGCTGGCCCTGCGCCACGTTCAGCGCGCC 2682 37 100.0 34 ..................................... GCCGTCGACTCACAGACGCCGAGTCGATCACCAA 2611 37 100.0 36 ..................................... CATTACTCACGGGTCGGGAGGCTGCGGCCGGCCGAA 2538 37 100.0 35 ..................................... CTTCCGTCGACATCCGAACCTCTCTGGAAACTAAG 2466 37 97.3 35 .........................A........... TCTCGGCGGTGGCGCCCGTCCAGGCCGCCACGGTG 2394 37 97.3 36 ........................C............ CCCGCCGTGGTGGGCTGAGCTTGCGGTCTGCCCCTG 2321 37 100.0 35 ..................................... CCGCGCGCGGACTGCATTTCTGACGTCCGAGGGAG 2249 37 91.9 33 ............T...................G..C. GCACCCACTACGAAGACCAAGACGTCGTCGGCG 2179 36 83.8 0 .............T.....T.........C-.G.G.. | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 97.3 35 GCGGCACCGGGGCCCCGGCCTCGGTGAGGATCACAAC # Left flank : GCCCCGGCCTCGGTGAGGATCACAACTTCCCGCTGTGGTTGACGGCGCGCTTGGCTCCC # Right flank : GGGCCGGTAGCTGGCTGTTGGAGACTGAACGGTTCGGGGGAGCACGACCCGGCCAGGGTCCGGCGGTTGAGGTTACGAGCCTGGCTGATGGAACGCCAAGTGGAGGTCGTGGTCATGGAGGCCGGACCACTGGAGGAAGGTTCGAGGTTAGCTGAGGAGGTTGTCGACGAGGCCGGTTTTCGCGCCGTTGATGAATGCGCGGATTTCGTGGGTTTCGAGGATGAGGGCGGGACTGGTGGGGTCGGTGGACTGGCGGAGCGCGACGCGGCCGTCGGGGAGTTTTTTGGCTTCGAGGCAGCTTCCGCCGTTGGGGCCGCTCCAGGGTTTCTGCCAGCCGTCGGCTCCGAGGTTGGCTGCGGGCATGCCGTTGTGGATGCTGGTCATAGGTGGAACTCCTTGGCGAGGTCGTGGAGTAGGCCGGGGGTGGCCTCGGGGGGTGCGGCGTGGGTGGCGAGGTGGTCGAGGGCATGCCGGTACGGGGTGATGTCGTCGGGTTTATC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGCCCCGGCCTCGGTGAGGATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.80,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 19657-10177 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFT010000232.1 Candidatus Frankia datiscae isolate Dd1 Dg nod, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================== ================== 19656 28 67.9 86 ..G.A.C..G...T.C...T...T...G ACCGTCTTACCACACGGCCGACTCGGCCTCCCTCCCATGGCCGCGGGGAAGACCGTGTCCAGCAGATCACCCGTATCCGGCCGGAC A [19638] 19541 28 89.3 33 A...A.C..................... CGCACCCAGACAGATGCGGCGCCGGCCGTCCGA 19480 28 96.4 33 ......................A..... CAGACGCCCGAGAGTCTCCGGCCTCGCGAGAGG 19419 28 100.0 33 ............................ CCGCGCATCGGATACAAGGCCTCGGCCGAGCAA 19358 28 100.0 33 ............................ GCGATGGCGGCCAGTACCTCCGGGTCTGAAAGG 19297 27 96.4 33 ...............-............ CCTACCCCACGTGACCCCTGACGCTAAAAAATC 19237 28 100.0 33 ............................ TCCGGACGAACAGCTACCGGGGAGACTGCCGAA 19176 28 100.0 33 ............................ TTCCAGAAGATCGCCAGCTTGACCACGCCGGTG 19115 28 100.0 33 ............................ CACTCCGGCAGTGCCACCGGCGTCTCGCCACCC 19054 28 100.0 33 ............................ AGCAGACGATGGTCTACCCGTTCGTCGGCCGGG 18993 28 100.0 33 ............................ CCCAAGTCCGCCGACTCGCTCCACCAAGAACGC 18932 28 100.0 33 ............................ AAGCAGGGCAGCGGCCTCGATCCGCCAGATGCT 18871 28 100.0 33 ............................ GCCGGCGCCGAGCCCATGGGCGACGTCGTCCAA 18810 28 100.0 33 ............................ AAACGTCCAGATCAGCGTACGTAGAGCGACTGG 18749 28 100.0 33 ............................ CGGATACTCGGCCATCTCGAACACGTTCCACGC 18688 28 100.0 33 ............................ CTCGCCGAGCGCCACGAGATGCTGCGGACAACC 18627 28 100.0 33 ............................ TGACGGACGAGGTGCGAGCACCGCGTCACGTAC 18566 28 100.0 33 ............................ TTGGCGCCCATGCGTATGCGCCCGATCTCGCGG 18505 28 100.0 33 ............................ GGGAGGCGGCGCCCTTGCGGGCCGGCTTACCCG 18444 28 100.0 33 ............................ GGAGCGTGTGATCCTGCCTGTCGCGAGTCGCGG 18383 28 100.0 33 ............................ CAGGGATACCTGGACCGGGACATCCTGCCCGAG 18322 28 100.0 33 ............................ GGCCGGGCAGCCCGGCCGCCCGGTACACGGAGG 18261 28 100.0 33 ............................ CGCACGTCTGCAAGCCGGTCAGCTACCCTCCCG 18200 28 100.0 33 ............................ GGCCTGGCCCGCTGTGCCGTCCGCTGCTGGCCA 18139 28 96.4 34 ...............A............ ATACGATCGCAACAACCCACTAAAGCCCCTGCCA 18077 28 100.0 33 ............................ CGACTGCGAATCGCTGGCTCGTGCGCGCCGGAG 18016 28 100.0 33 ............................ ACGGCGGAGGAAGTGGCGAGGCTTGACCCGCAC 17955 28 100.0 33 ............................ CGGACGTGCACGATCCTGCCGTGGCCGGCGATG 17894 28 100.0 33 ............................ TCACCCAGCCCTGCGGAGCCCGTGGCAAACCCG 17833 28 100.0 33 ............................ TACGGCACCCCCGTCGGTCGCCCCGGGTGGCTG 17772 28 100.0 35 ............................ ACCGCTACCGGCAGCATCAGCGGATAGCGGGGCTG 17709 28 100.0 33 ............................ CCAGGCCCGAGGAGCGAGCGTACGGTGAACCGA 17648 28 100.0 33 ............................ TACTGAGTGCGGAAGGCGAGATCTTCGCCGTAC 17587 28 100.0 33 ............................ CACCGGATACGCTGACCAGCCAGACTCTGGGCG 17526 28 100.0 33 ............................ TACCGCCGCACCGACAGCCGCGCTGTAACCAGC 17465 28 100.0 33 ............................ GACATGACGTCCTGCCTGATGGAGCTGATCCAG 17404 28 100.0 33 ............................ GGGTTTTCGGCAGCTGATAGCCGAGCGAGATGC 17343 28 100.0 33 ............................ CTGTCGCTCCAGGCCCTTGATGCGCGGACCCAC 17282 28 100.0 33 ............................ TTGGCGACGGCCAGCCGGGCGGCGGCATCCGTC 17221 28 100.0 33 ............................ GGGCCGAGGCTCGTCACCTGCCACGTGCGGCAT 17160 28 100.0 33 ............................ GCATGTGGGCCGAGGCGCTAGGAGAGGACGTTG 17099 28 100.0 33 ............................ AGAACAGGCCCGTCATCCAACACGGGCTTGCGG 17038 28 100.0 33 ............................ TTTATGCTCGCGGGGCATGACGGCGCGCTGGTG 16977 28 100.0 33 ............................ GGACATCACGCCGAACAACAACATCGACTCCGG 16916 28 100.0 33 ............................ AAAAACCAAGACCAGAAACGATCGTCTACCTGT 16855 28 100.0 33 ............................ TGTCGGCCGCCGCACCCACCACCACCTGAGGAG 16794 28 100.0 33 ............................ GTCGACGACGCGACGCCGCCAGCCGCCTGTCGG 16733 28 100.0 33 ............................ GCGGGAACAAGCGGGCTATCGGTATGCGAATGG 16672 28 100.0 33 ............................ GCTGCGTCCAGGGCTACGGCCCGGGCTGCGTAC 16611 28 100.0 33 ............................ GGATCTCATTTACGATGAAGCAGACTCTGATAA 16550 28 100.0 33 ............................ ACGGTCCGCCGTGCCAGCGCCAACCTGGCGCTG 16489 28 100.0 33 ............................ TCTGCTTCGCGGCGTGCGACGTAGTCGGGAACG 16428 28 100.0 34 ............................ AGTGAGCCACATGCGATGATCGTTGCATCGTAGG 16366 28 100.0 33 ............................ CCACGCCATCATCGCGCCCTTGACCACGAGGAT 16305 28 100.0 33 ............................ AGCCGATCGACGCCGGTGCCGTTGACGGTGCCG 16244 28 100.0 33 ............................ GAGCAGATAAAGCGGGTATGCGCGTGGTGAGCG 16183 28 100.0 33 ............................ CCTTGTGCGAATGCGAGTCTTGCGCTCGATCCA 16122 28 100.0 33 ............................ GTCATCGAAGCCGCAGACCTGCGCGGCGCGGGC 16061 28 100.0 33 ............................ GGCAAACCCGTAGGTGAAATACTGGTCGACAGC 16000 28 100.0 33 ............................ GCCCTGCGCCGCGTCCTGGCCGGCGGTGACGCT 15939 28 100.0 33 ............................ ACGCCCGGCTGTTCACCCAGCCGGGCGCCCCAA 15878 28 100.0 33 ............................ ATCCCTCCAGGGATGATGAGTGCCCCGGGCCGG 15817 28 100.0 33 ............................ ACCGCGGCCGACGTCGGGTAGGACACCTCGGTC 15756 28 100.0 33 ............................ GCCACGCTTGTTGTGCTGCCTGTCAGCACGTAC 15695 28 100.0 33 ............................ AAATAGAAGCCTGGCTAGAAGTGGTGTCCACCG 15634 28 100.0 33 ............................ GATCTCCCCGACCCGAGCGTGGAGATCGAGAGA 15573 28 100.0 33 ............................ CCCTGCTCGATCGCGAGAAGAACGTTCGCCGGG 15512 28 100.0 33 ............................ CGCTGCAACACCATGCGGCGCTCCTGCGTGATG 15451 28 100.0 33 ............................ GTGCTCACCGTGCTGACGCTGGTATCGATCGCG 15390 28 100.0 33 ............................ GACACCGACGTCATCCACGGGCTCGTCCGCGAG 15329 28 100.0 34 ............................ GAGCTCGGCGTCTGTCTGGTTGGCCACCCAGGTC 15267 28 100.0 33 ............................ CTCGTGACGTCGGAGCCGTCCGGGCCGGACCTC 15206 28 100.0 33 ............................ GTCAGCGACCACGCTGGACGGCACGACGCGGCA 15145 28 100.0 33 ............................ GTGCCAGATATGGTCCACGCCGGCCGCCACCAG 15084 28 100.0 33 ............................ CCGTGGCAGGAAAACGATCTCGTGGCCTTCGAT 15023 28 100.0 33 ............................ CACGCCGGTGTCGGAGCCGCGCAGCGTCGTCGG 14962 28 100.0 33 ............................ CCACGGAACGTCGACAGGAAGCGGCTCACAATC 14901 28 100.0 33 ............................ GTACGCGGCTCGATCTTCCCGCCGGACGGGAGG 14840 28 100.0 33 ............................ CATTCGACGGTCAGCAACACGAGCCGGTACACG 14779 28 100.0 33 ............................ CTGCACCGGGACGGCGACCGGAGCCGGGCGGAA 14718 28 100.0 33 ............................ TGCGCCAATGTGGCGCTGAGCAGAGAGCAGATA 14657 28 100.0 33 ............................ CGCCGTGCCGGCCTGATGCCAGTCTCTCCGGAG 14596 28 100.0 33 ............................ GTTGAACGAGTCCACCCAGAACTTCCCGGCGCG 14535 28 100.0 33 ............................ AGCGCCCAGCGCCGACAGCACGGATACGAACAG 14474 28 100.0 33 ............................ CAACAGACCGAAACCCTTAGCCGTGATCGGCAC 14413 28 100.0 33 ............................ GGCGTAGAGCACCTGCACGCCGTCGATGCCGGG 14352 28 100.0 33 ............................ GCCGGGGCACGACTTGCTCCCACGGTGGCGGAG 14291 28 100.0 33 ............................ AGGTTGCGTTCGGCCGTGACGCTCCCAGCGACG 14230 28 100.0 33 ............................ TCGGACAACGTGATCCTGTGGCCGAATTCTCGG 14169 28 100.0 33 ............................ GTCCCCGGGAGGGTTCGGATGGCCTGAGCGGGG 14108 28 100.0 33 ............................ CCGCCCCCTCAGATGTTCATGGTCTTGGTGGAG 14047 28 100.0 33 ............................ TCCCACGGGCGGACGCCGAGCAGATGTGCCGCG 13986 28 100.0 33 ............................ TGGTCCAGTGTCCGCCGTCTGGACGCCAACCGG 13925 28 100.0 33 ............................ GGAAGACGGTCCTCGGTGAGCTCCTGGTCTTCA 13864 28 100.0 33 ............................ GCGACGGTAGTTGTTACCCCTGCGGTACCGGTA 13803 28 100.0 33 ............................ GGGCAAACTGCGACCGGCCTACTGACTCAGGGA 13742 28 100.0 33 ............................ GCCGTGCCGGCGTCCGTTCTGTCCAGCTCGTTG 13681 28 100.0 33 ............................ TGCGTGCCCGCAAACCGGGCCGTGCTCGTGCCC 13620 28 100.0 33 ............................ CACCAGCCATCTTGTGACCGGAGCCCGGTGCGG 13559 28 100.0 33 ............................ GCCCAGTTGACCAGTGCGGGTTTCGGCAGGCCG 13498 28 100.0 33 ............................ TACACCGACAATCTGTACTCGATCGACTACTAG 13437 28 100.0 33 ............................ ACCGTTACCGAGCCGGCCTCGGCTGCGCCGGCC 13376 28 100.0 33 ............................ CACGATTCCTCCTCAGATCATCCAGACGTTCGG 13315 28 100.0 33 ............................ AGAAGGTCGACGAAGGCCATCTGCGCCTGGCGC 13254 28 100.0 33 ............................ ACCGGGTTTTACATCATTGGCGGGTCGGTCACG 13193 28 100.0 33 ............................ AGCCCGCGCAGCCGCTCCATCTGATGGGGCACC 13132 28 100.0 33 ............................ CTCGTCAGGCAGTCGCTCACGGAGATGGCCGGT 13071 28 100.0 33 ............................ TCCGCCTCGGCCCCCGTGGCGCCTAGGCGGGCG 13010 28 100.0 33 ............................ CACCAGCCATCTTGTGACCGGAGCCCGGTGCGG 12949 28 100.0 33 ............................ TCACCCCGGCCGAGCGGCACACCCCGGGCGATG 12888 28 100.0 33 ............................ TGTGGTCGTACCGCCCACGCTGCATCCCATCGG 12827 28 100.0 33 ............................ GCTTGAGTTGTGCCCCATGATGACCCAGACTCG 12766 28 100.0 33 ............................ CTCGCCAGCATCCAGACGCGGATCACCGAGGCG 12705 28 100.0 33 ............................ CTCGCGCTCGCCGAGGTGCCGGCCACCTACCTG 12644 28 100.0 33 ............................ GAGCGAACGATCGCGCTAAGCGCCACCCTCGGG 12583 28 100.0 33 ............................ GGCGCGGGCGACGGAGCGGGACCGGTCGGCGCC 12522 28 100.0 33 ............................ GCCAGGGAAGTCCTCGAAGGCCGGCTCGCCGCG 12461 28 100.0 33 ............................ CTGATCGCACACGCGAACAACAGCGGAATCCGG 12400 28 100.0 33 ............................ GCGGGACCAGGTGGTCCGACTGCTGGAGCGTGG 12339 28 100.0 33 ............................ GTGAGGATCAGGCCGGGTGGCACGCCGTTGGTG 12278 28 100.0 33 ............................ GACTTCTGGGAGTTCACGCCCAGTCACTCCGCG 12217 28 100.0 33 ............................ CCAGCCGGAACGGCGCGGGTCAAGGCAACCGCG 12156 28 100.0 33 ............................ TCTCCACCGAGGTCCACCCCTGGCTGGCGTAGC 12095 28 100.0 33 ............................ TCCGTCACCCTGGACCCGAGCGCCGTGTACGGG 12034 28 100.0 33 ............................ TTCGCCTTGCGTCTGCGCGGGCCGCGCATGAGC 11973 28 100.0 33 ............................ TCCGGAGCGTCTCCGGAGCATTCGTGGTAGCAG 11912 28 100.0 33 ............................ GCTCGGCCTCGACGCGGGCGCTGCTGCCGGCCA 11851 28 100.0 33 ............................ TCTCCCGGTGCAGGCCCCGGCGGACCGTGAGCG 11790 28 100.0 33 ............................ TCCATCCGGGCGAGCAACTCACCCGTGGTGCCG 11729 28 100.0 33 ............................ TCCGCTTGAACAGCCGGCGGGCCAGGATCTCCG 11668 28 100.0 33 ............................ GATCTCCTCGTCTTCGTCAACGGCCACGGGCGG 11607 28 100.0 33 ............................ CACCGCGTCCGGGACATAGCCGGTGCAGGTGAG 11546 28 100.0 33 ............................ CTGCTCACCGCCGTCGCCGCGGGTCTGCCTGAG 11485 28 100.0 33 ............................ GGCAAATACCAGCTGGGCGTCCCGTTCACGGTC 11424 28 100.0 33 ............................ GATGTGCAGCGGCCACGTCGAGGCCCTGTTCGG 11363 28 100.0 33 ............................ ACCTCAAGCCCGGCCTGCGCGTAGGAGAGCAGG 11302 28 100.0 33 ............................ GCGCCACCGGCGACCGACCAGATCGGCGTGCCG 11241 28 100.0 33 ............................ CGCCGTCGCGCGGCTGGATGAGGACGAGTTCGA 11180 28 100.0 33 ............................ CACTCGCCACCTTCGAGCATCCGGCCACCCGAC 11119 28 100.0 33 ............................ GACCAGCCGGAGGGGACTGTAGAGGGGGCCGCG 11058 28 100.0 33 ............................ TCGCCAGCGCCAGATCAGCAGCTGGCCTCGAGC 10997 28 100.0 33 ............................ ATCATCAAGAACTGCAAGTTGCGCTGAGTGATA 10936 28 100.0 33 ............................ CACCGCGGGCCCCAAATAGAAAAGCGCTCACCG 10875 28 100.0 33 ............................ GCGAAGGATCGTGGCCGTCGGTCGTCGACTGCC 10814 28 100.0 33 ............................ TAGCAGTCCACGACAATCGGCACCTGCCCGTAG 10753 28 100.0 33 ............................ CCGGCCGGTCCGGGACGCCCACTCCTCCACCTC 10692 28 100.0 33 ............................ GTGGAGATCCACGCGGGACGACGCACGGAACGC 10631 28 100.0 33 ............................ CCCCACCGCTTTGCGTTGGTCGCGACTGCACCT 10570 28 100.0 33 ............................ CTTCGCGCGCCGACTGGACGAACCAGGGAAGAA 10509 28 100.0 33 ............................ TAAAGAAGATCGCGCGGCTGTCTCTCGCCACTC 10448 28 100.0 33 ............................ GCCTCCCCGTTCGGGGCAATGTGCGGCCCGTAG 10387 28 100.0 33 ............................ CGTCGGCGTGGCGGGCGAGGCTCAGTAGCGAGC 10326 28 100.0 33 ............................ CCGCCACGGCGGTCTCCGCGCGGGCGTCTGGGC 10265 28 100.0 33 ............................ ATCCGCTCGCTGGGCGCCTCGTGCTCTCCGGGC 10204 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================================================== ================== 155 28 99.7 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : GTCTCCCAGCGACGCCCCGTCGACCATCTGATCGGCCAGTACCACACCCTCGCCCGGACCATCGCCGACCGTGACGTCAGACTCGGCCGGCAGCTCGCCGACCGTCTCCGTGAATGGCGTGGACCCACGCCGGGCGGTGGTGTCACCCGGCGCTTTTTCGCATAGCCCGAGCCGTCCCGGTCTGTCTGGCACTCCGGGGGTGAGTCCATTCCGTCCAGCACAATCACGACACGATAAGGCCCTCCGGGGCTGCTTGGCTCGGAGGCCTCATCGTGTCGTGGGCTCTCGATACCGGTCATATCAGGCTGCCGCGTCCTCGCATGCCAGTACGGCCAGATAGCCGCATGCTGGCTGTGGAGTTGATCCTCAACAGCGTTGCGGGGGCACCAGCTGAGGGTACGCACCGGCCCTGCCGAAGTGGATGCGGCCATCACAACTGACCGGCTCTACACAGGCCGGAATCGCCGTCAACATCCTGCCCGATCTAATGCTCAGAGCCG # Right flank : ACTTGCTGACCTGGGCTTTTATCGACGGGGACGGGCGAAAAGTATCAGTCCGTCGTAGTCAACAGGGTAGCCGCGGTCACGACCAGCGGTTCGTACGGCCCATCCTTGTTCGTTGTTCGCCGGTTCGATCATGACGGCTTGGCCGTCGCCGACGCGTTGGGAGAGCACGGTCCAGAGATGGTCGCGGACACGGGCGCTGGGGTTACCGACAAAGACTCCTGCTGTGATTTCGATCATCCAGCGTGTCAGGTGGCCGCGCAGACCTTCGGCCGCGGCGACGAGGACGACGACGGTCACCAGGGTGGTGGTTGCTGGTCGACGTCGGGTCCGGTGACGCCGAGGACGGTGTCGCCGTCCCATTGGTCGGCCAGGTCGGCGGCCCAGTTGACGCCGCCGGGTACGTGGCCGTCGAACTCGTCCCACAGGTGCATGGCGTCGTCGTCGCGGTCGTGGGCTCCTTCCTCAAGCAGAAGATCCTTGATGTCGTGGACGATTCTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //