Array 1 467761-470441 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134151.1 Serratia plymuthica strain NCTC8900 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 467761 29 100.0 32 ............................. AGGTGGTGACGTTAGGCGCAGCAGTACTGGAG 467822 29 100.0 32 ............................. ATGCCCACATAAACCGCACGTCAGCCTCAAGA 467883 29 100.0 32 ............................. TTCGAGGGAATTTCTGGATGGAGTGGCCCGGA 467944 29 100.0 32 ............................. TTGGTCATCGATGTGTAGTTATCGCCGTTAAT 468005 29 100.0 32 ............................. GATGGTTTGAATTACTGCCTGTCTGTATGTTT 468066 29 100.0 32 ............................. CACGCACTGCGCTCATCAGGGCAAAGCTTCTA 468127 29 100.0 32 ............................. CGACAAGCAAGGCAAAGAATGGCCCTTGGAAG 468188 29 100.0 32 ............................. AAAATTGGCTACGCCGGTGCGGTTGCCTCGTC 468249 29 100.0 32 ............................. ATCTATTGGCTCAAACCCATTCTTGCTAGTAG 468310 29 100.0 32 ............................. CTGAACGTCTTCTTTTAAATCAGCCATCGCCA 468371 29 100.0 32 ............................. TTAAATCATGGGCAAATAAAACCCCTGTCGCA 468432 29 100.0 32 ............................. TACTCATTTTTTACTTTCCCCGGCGGCTTCCC 468493 29 100.0 32 ............................. GTAAAAACCATGGGTGCCAGCCCGCTGAGTGG 468554 29 100.0 32 ............................. AGGGGGGGGTAATCGTATTACTGGTACATCAG 468615 29 100.0 32 ............................. CGGAACAGCGCATTCAGCAGGCCACATCTGCA 468676 29 100.0 32 ............................. CATTTATCAGTTTCTGTGCCGCATCTGCAGCT 468737 29 96.6 32 ............................T GTCTGGCTGGCGATAGTGCTGGCTCATCAGCC 468798 29 100.0 32 ............................. ACATGCTTGCTAATTATCGCGACGCGAAAAGT 468859 29 100.0 32 ............................. CGGCGCTGGAGAAAGCTAAACAGGACGCCAAA 468920 29 100.0 32 ............................. TGTTGGCATTAACGATCCACGCGCCGGAGCAG 468981 29 100.0 32 ............................. ATGGCGGGGTCCATTTTCTCGGGGTTTATGGA 469042 29 100.0 32 ............................. GGATTTCTTTCCATCTACTCATCCTCCTCCTC 469103 29 100.0 32 ............................. GAAATGACAGTTGCTTATGATAGGTGGCTCGC 469164 29 100.0 32 ............................. CTGCCACTCGGCGGCTTTTTTAACGACTAAAT 469225 29 100.0 32 ............................. TGTCACATAGTGGCAATCTTTATCAGGTTGAA 469286 29 96.6 32 ............C................ TGTCCTATCAATGACCCTATGATGCGGCGCGA 469347 29 100.0 32 ............................. TTAGGCTGATATAATTTTGTTCGATAATCGGC 469408 29 100.0 60 ............................. CTCAGGCCGTAGGGCGGGTCGGTAACAATCGAGTGTTCCCGATCGCCGCTGCCAGATGGT 469497 29 100.0 32 ............................. GGATGTTCTGTGATGATGGGTGCCGGGACGAC 469558 29 100.0 32 ............................. CCAAAGGTGTACTGCCTGTGAGTCCTTGTACA 469619 29 100.0 32 ............................. ATCGATACGACGGCCGCATTGTCAGTATCGCC 469680 29 100.0 32 ............................. AACTGACCATCGATAACACCATGGCAGCAGCA 469741 29 100.0 32 ............................. ATATAATCCGCCTCTCGCAGATAATACCATCG 469802 29 100.0 32 ............................. GCGGCGGAGTTTGCTGCTGAGCACGCAGCCAT 469863 29 100.0 32 ............................. GACTTGTGACACTGAGTGTCGAGTCCCTCGCT 469924 29 100.0 32 ............................. TCAGCCATATCACACCGTCGCTTGCATGCAGG 469985 29 100.0 32 ............................. TATTTCTGTATCTCGATTTGAGTTGATTTCTT 470046 29 100.0 33 ............................. GCGAACCGCAAAGCCCGTGACCTGGTGATCGTC 470108 29 100.0 32 ............................. TAGGATTTATCGAGGGATGGGGGCTGATTCAT 470169 29 100.0 32 ............................. CGGATTCTCTGGGGTAACAGTCACAATCGGGG 470230 29 100.0 32 ............................. AAGGTTAGGCGAACGGCCTGCACTGTTGGAGC 470291 29 100.0 32 ............................. CACATCGGCGGGATCCAAGTGTACTTGCCTCG 470352 29 100.0 32 ............................. CACAGAAGCAAGCCCAAAGCGCAGGGCTAAAA 470413 29 93.1 0 ...........A..............T.. | ========== ====== ====== ====== ============================= ============================================================ ================== 44 29 99.7 33 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTTATCACCACGCCGATATTCTACCTCTCCGGCACCATCTGGCCGCTGCAGGCAATGCCGGGCTGGGTGCGGACCATTTCCTATTGCATCCCCTCAACCTGGGCCACCAAGGCGATCGCCGGGGTTAACCAGATGGCTTATCGCTTAACGAAGTGTGGGGCGATGTGGTGATGCTGCTGGTGCTGGGGATTATTTATACCCTGCTGGGCGTCGGCGTGGGCTTTCTGCGCAACAGCGTGGCGCTGCGCAGTCTGTTTCGCAAACGGAGTGCATAGCGCGAGGTGGTTGTAGTATCGTCGCAATAATAGAGTTTTTCGGTGAATTTGCATTTTTGCAAATACGTTGTTTTTTATTGCATGAATATCAAATGGTTAGATTTTTTCAAAATGACTTAATTGTTGGTGGAATTTTATAGCCTTAAAAAATACAATTAATTCAGTTAGATAGTTTTAGA # Right flank : GATACTCCGTAGTTCCCAACGGACAGATGTCAATAATGGGCGTGCTACTTACGAAGCCATGTATATCTGGAGGTGGGTATCTTTCATAAAGAGTGGAACTGACATCGACCTGCTGATTTGATGTAATTTAAAAGCTATTAGGTATGGTAAGTTAGTTGCATTGTTAATTATTTTATTTTCTATTTTTTCATGAATTTTCTGATTGAAGTTATATGGGGTTTTAATTGATTTTGTGATGTTTTTTCCGGTTTGGTATGAGGTTAATTGGTTTTTTGTGTTTTAGAATAACTTATAGTTACCATTAACCTGGGGCTAGTGTTAAAACATACAATATATCGTTATTTTATCTAACAGAGATTTTTTATGGGAAGCGATATTCCTGTTAATTATATGCGTTATTGGGGAAAGGCGAAAAAAACAGACCTTCCAGAGGGCGATGATTATCACTTATTAGCCTACCATTGCCTGGATGTAGCTGCATGCGGGTATCAACTGGTTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479457-481315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134151.1 Serratia plymuthica strain NCTC8900 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 479457 29 100.0 32 ............................. CCCACAGATACGCCAGAACCTGATAGAACACA 479518 29 100.0 32 ............................. CGGCCCAGGTGCGTCGACGTAGCCTTGCTTTA 479579 29 100.0 32 ............................. GTTAGGCAGAACAGGCGAAGGCAAGTCAGATA 479640 28 96.6 32 .................-........... TATCACCGGGATGTTGTGTAAGTTTATGTTGA 479700 29 100.0 32 ............................. TTAAAATAATTCGTTTGTATGGTGTGTTAGGC 479761 29 100.0 32 ............................. TGTGATAACGCCATTTGTGGCTGAAAATTCTG 479822 29 100.0 32 ............................. CTTGCGGAATTCTGGGAAAATGGAAAGCTACT 479883 29 100.0 32 ............................. ACCATTCGCGACGATCTCCCCGCCCTGAAGCG 479944 29 100.0 32 ............................. ACCATTCGCGACGATCTCCCCGCCCTGAAGCG 480005 29 100.0 32 ............................. AGACCTCGCCGATTTAACTGAAGAGCTCACTG 480066 29 100.0 32 ............................. TAATTGCCGCCGGGACATGGGTTGGTAATCAC 480127 29 100.0 32 ............................. CGCAACGCATGGTTTCGTCTTTGTAGTAGATA 480188 29 100.0 32 ............................. GGACGGTGATCACCATTCTGAATTACTCTGAA 480249 29 100.0 32 ............................. GCAGCAGGACTGCCCACCACGGCGTTTTTACA 480310 29 100.0 32 ............................. TTACGGCAACAATTTCCGAATAGCGCGCAGTA 480371 29 100.0 32 ............................. ACTAATCCCTTGCTTAACAATATTGTGAGTGG 480432 29 100.0 32 ............................. CTGGTGCTGATCAAGATAGCCGACAACGCTAA 480493 29 100.0 32 ............................. GCCAATTCTGGTGCGCTGGTGGGGGAATCTTA 480554 29 100.0 32 ............................. GCCAATTCTGGTGCGCTGGTGGGGGAATCTTA 480615 29 100.0 32 ............................. TGTGTTTTTTCTTTCTTTATTCCTGGTAGAGA 480676 29 100.0 32 ............................. GGTTAGATCAGGATACTGGCGACTGGATGCTA 480737 29 100.0 32 ............................. GCTTGGTTTTGGGTTCTGGTTGGCTGCGCCCT 480798 29 100.0 32 ............................. GCCATAACGTTTCTGCTGATTTCCATTCCAAC 480859 29 100.0 32 ............................. TGGGAATTTCGCCCAGGCACGCCGCATCAGGA 480920 29 100.0 32 ............................. TTCTACGACAGCGAGTTTGTGAGTTTCTTTAA 480981 29 100.0 32 ............................. TTCATTCAGTTGCTCCCGATCGGTCACAAGGG 481042 29 96.6 32 ..........T.................. AGTTTGTTGGCGTGGTCAGGCGTTATGGTGCA 481103 29 100.0 32 ............................. AACTACGACCGCGCCAACTACCTGCCTCAGAA 481164 29 96.6 32 ............T................ AATGGCGGCCCTGTGTCTGCTGGAAGTATGTA 481225 29 89.7 33 ...........A.T............A.. TGGGAAACAGGGAAAATGGTTCCTGTTGGGTCA 481287 29 93.1 0 .G..........................C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATCGAGGAAGTTTTAGCCGCGGGGGAAATCGCGGTGCCTAAGCCTTTCGATGATGCACAGCCGCCAGCAATTCCGGAGCCTGTTGGGCTCGGCGACGTTGGCCACAGGAGTCGTAACTAATGGGAATGCTGGTGGTGGTGACGGAACAGGTTCCCCCAAGGCTACGCGGTAGGCTTGCGGTCTGGTTGCTGGAGATTCGCGCTGGGGTTTACGTCGGTGATAGCTCACGCAAAGTCCGAGAGATGATTTGGCAACAAATCACGGTGTTGGCAGACGAAGGGAATGTTGTTATGGCCTGGGCGACGAATAATGAGTCCGGGTTTGATTTCCAAACTTGGGGAGAAAACCGGCGTGAGCCGGTGGATCTTGATGGACTAAGGTTGGTCTCTTTCTTACCCTTGGAAAATCAGTAGGTTATAGATCTTTAAAAACACGGAAAATTTGGTGGAATTTTAGGGGTATAAAAACTTCTATTATAACAACAGGTTAGTTTTAGA # Right flank : CTAGGCTCTCGCATTCCCCTCAACCTGGGCCACCAAGGCGATCGCCGGGGTTAACCAGATGGGCTTATCGCTTAACGAAGTGTGGGGCGATGTGGTGATGCTGCTGGTGCTGGGGATTATTTATACCCTGCTGGGCGTCGGCGTGGGCTTTCTGCGCAACAGCGTGGCGCTGCGCAGTCTGTTTCGCAAACGGAGTGCATAGCTGACGCCGCCGTATCTAGTGCTGTGCGGCGGCGACCGACATAACGCCTACCAGTCCGGCAATCTGTGCCACCTGTTGCGGCCGCAATGCATTTTCGCCAAGTCGACGCAACAGGGCCTCCCGCGCCACGGAGAAGGCTAACGCCTGGCCGAGGATGGCGTGAGCGCACAGAATATTTTCCTGCAGGGCCGGGTCTTCACCGCGGATCGCCGCGACTAACTCGCTAACGGCCTGATGCAGCGGTAAGAACAAGCGAGAATACAAGGCATCGAACTCAGCGCTGGGCTGGAGTTGTTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //