Array 1 13865-16519 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRD01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_3985 NODE_1_length_102645_cov_4.91765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13865 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 13926 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 13987 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 14048 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 14109 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 14170 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 14231 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 14292 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 14353 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 14414 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 14475 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 14536 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 14597 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 14658 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 14719 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 14780 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 14841 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 14902 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 14963 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15024 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15085 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15146 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15207 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15268 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15329 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15390 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15451 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 15512 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 15573 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 15634 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 15695 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 15756 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 15817 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 15878 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 15939 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 16000 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 16061 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 16123 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 16185 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 16246 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 16307 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 16368 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 16429 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 16490 29 100.0 0 ............................. | A [16517] ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //