Array 1 59-353 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTVZ01000067.1 Bacillus thuringiensis strain AFS011084 AFS011084_120_E10_Contig67_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 59 32 84.4 34 ......T...T.GC.......A.......... TTTATGGTAACTGGTGGTTTAACATATCACATTT 125 32 93.8 34 .........T.........T............ TTTGATATACCTATTTTATCTATTGTTTGGATAA 191 32 100.0 35 ................................ AAGAAAAAAGGTCAAACTTTTAGTAATCAAAAAGC 258 32 87.5 33 ..AA.....T........A............. GGCGATATGCCAGGCATTTGGCAAAGTGTTATT 323 31 90.6 0 .........T.-..................C. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 91.3 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : GAATAGTTGAAAGAAAGTATCCTTATAAGGATATACTCTATCAATTTATTAAAGGAAAG # Right flank : TCTGTTAATTTCTTAACGAGGACTAGGAGCGTAAAATCACATCTCTTGTATGATTGTGATTAAACAAATTGAATTAAGAATACCTTGTGCAAACTTTTAGAATGCTAATAAAATTTTAGAAGTGAATTTTCAGTTTATCAAAGGAGGTCAATAATGAACAATAATTTCATGATAAAAATTAAAAACTTAATATTAAGTAAATCCGAAGGAGAATTTTGGGATTTTAAACAAGAGTGGCATAGAGACAATGAGAGATTATTACACGATATTCTTTGTTTTGCAAATACAGTGCATGAAAAAGACTGCTATATAATAATTGGAGTATCTGATAATGGAGATATAGTTGGGATAAATGATGAAAATAGAAGGGAACAGTCAAGTATACTTGACTTACTTGCTAATACTGTTTTTGCAGGTGATAATACCCCAAGAATTCAAATAGACACAATAAACATAGAACATAAAAAGGTTGATATTCTTACAATATTTAATTCTAATAA # Questionable array : NO Score: 6.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [7-7] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7118-5967 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTVZ01000079.1 Bacillus thuringiensis strain AFS011084 AFS011084_120_E10_Contig79_140618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7117 32 100.0 33 ................................ CATAACAACTTGTAAGTTATCTAATTTATCACC 7052 32 100.0 34 ................................ GATATGAGATCAAAGGTATAAAGAACATTATAAT 6986 32 100.0 33 ................................ CCTGCATATCATTTTCCTTTGCATAGTCTTCAA 6921 32 100.0 33 ................................ ATTATAGTTTTAATGGGTTTATCTTTCGTTATG 6856 32 100.0 35 ................................ AGCATTACTATTGTTACTCATCTTATTCCCTCCTA 6789 32 100.0 33 ................................ ATTTGTACAAATAGCATCGTTTTTCTCATCTTT 6724 32 100.0 35 ................................ CACTTTTTGTCCATTATGCTTTAAAACTACTGTTA 6657 32 100.0 34 ................................ GCACCAGAGGGATATTTAATTAATGAAGAAACAT 6591 32 100.0 34 ................................ CCGCACCCTTCGAAACAATAACAGTTGTTGTCTG 6525 32 90.6 34 .........C.A........T........... ATCATGTCAAAGGCCATTTGCACCCATTGAGGTA 6459 32 90.6 34 .........C...A........A......... GAAAAAACGCTTGATGACTTAATGCGTGATGAAG 6393 32 93.8 32 .........A..............G....... CACATTAAGAATTTTGGTACAAAGATTGTAAA 6329 32 100.0 33 ................................ ATGCCAATTGGTGTACAAGCGGACTTTATTAAT 6264 32 96.9 34 .........C...................... ATTTGGTAGCGCATTGTATATGGATGCACGATTT 6198 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 6130 32 96.9 35 .........C...................... TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTTT 6063 32 93.8 33 ...........AG................... GGATCAGTAAACGGCAATGAAAAACCCGACGTC 5998 32 93.8 0 .....................CA......... | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 97.2 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATTAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATTATGAAACTATACATTTTTGTTAATCAGTTAGGTAATAGCTATGAAAATAGGGTCGAACATATTGGTGTAAAAGAATAAATTGATTTAGAAATCTCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTTATACTTTATGGATTGAATTTATAATTTTTATAAAAATTACTTTACTAAATAAAAATATTTTTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGGG # Right flank : TAGTAATGCTCTGGCTTTAAAACGCTCTGCAGTTTAGTAGATACTCAACTGGAAGTATCTACTAAACTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACGTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //