Array 1 438-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFP010000224.1 Vibrio cholerae strain Vc2573 NODE_224_length_479_cov_1.634328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 437 28 100.0 32 ............................ CGAATACCAATGCCCTTATTGTGTCCGGTACG 377 28 100.0 32 ............................ TCTCTGGTTGATAAGCCTTGCTGTTGTGGTGA 317 28 100.0 32 ............................ TGCCCATTCAGCCCCTTTCGAGTCTTCGGACA 257 28 100.0 32 ............................ AGATGATGGATCCGCCACATCAGGAAGCTTTA 197 28 100.0 32 ............................ GCGATGGCTATTGTTCTTGCCTCAGGCGGTCG 137 28 100.0 32 ............................ ATTGCGAAGGTGATATCTGAGTATGGTTTCGC 77 28 96.4 0 .......................T.... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCTTAGAAATGCTCCGCGATGGGTGATTTTTCGTCTTTTT # Right flank : ATGATTTGATGATGATTTCGCAGCGTGAAAGGGGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 122-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFP010000362.1 Vibrio cholerae strain Vc2573 NODE_362_length_345_cov_1.578358, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 122 28 100.0 32 ............................ CTACGAGGTTGGCGAAAAGAACAAGCCTGAGC 182 28 100.0 32 ............................ AGTCACTTCAGCAACCCACTTCTTCTTTTCTT 242 28 100.0 32 ............................ ATGATGATAGCGGGTGTGGGTGGTGATGTTAA 302 28 96.4 0 ....................G....... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAAATTTTTGTCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : ACAACTGACACGCCGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 830-1037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFP010000042.1 Vibrio cholerae strain Vc2573 NODE_42_length_4873_cov_107.103420, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 830 28 100.0 32 ............................ AGTCGGCAGTACGAAAACGGCACGTCTCTCAT 890 28 100.0 32 ............................ TGTTAAAAATGTTACGTTTGCAGAATTGATGA 950 28 100.0 32 ............................ GATACACAACAGGCATTGTGGTTCAGGGTTAC 1010 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCTCGAATTATCAAGTTCATTGAACAAAATGAGACTCAAGGCAAAGTTGTAGTACATTGCAAATCAGGCAAAGATCGGACAGGGCTAGCATTAGCAGCATACCTTTTAAAATCCAAAGGGTTCGGTGTAGAAGAATCAATGTCGGCAGTAAAGGATGTTCGTGATATTGCTTTCAGTGCACCAGACTGGGATTGGTTTACAGAAAAAGTTTTGGTTGGTCTGTCTAACACATAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGGGTTTAGTGGTATGCGTTGCCAGCCCCTTAGACGGGCGTTAACTGGCAATGAAGTTGCCCATCTTTTTTCGTTGATTTTTAAGCTGTTGATTTATATCAACAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTGTAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCTGCGGTGGTTACGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGCTTAATCCATAAAAATTAGCAGGTTGTGATCGTCGATTCCTTTGGCATGTTGTTCAGGTTTTGTCGGCAATTCAATATTGTTTTTCGCTGCCTAATGAAGCGGCAGTGTATCTGGCGCTGAAAAATCGCGGTGATTGCCTCATTGTGTTGTTGAGTCTGCGCGAGGTTAGTATTGTTGTCTCAAGTCGCTTTGAGCAGTTTGGTGCTTTTACTTACAGGCTGAAAATTAGTCGGCAATTGAGTATTGTTTTGCGCTGCCTAATGAAACGGCAATGTGTCTGTCGCTGTAAATTTCAGTGTTATTGCCTCATTGAGTTGTCGCGCCCATGCGTGGTGAGTGAG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFP010000623.1 Vibrio cholerae strain Vc2573 NODE_637_length_255_cov_1.539326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43 28 100.0 32 ............................ GTTTGGGGCGACAAATTTACACAAAAATTAAG 103 28 100.0 32 ............................ GTAGATATACTCCGCTTCGCGGTTGTTCTCAT 163 28 100.0 32 ............................ ACTACTAGTTCGTCTCCGATGGCGTCGATAAT 223 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCTTAGAAACGTTCACGTGGGACATCACAGCAAGACAAACGG # Right flank : CGACA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 186-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFP010000733.1 Vibrio cholerae strain Vc2573 NODE_761_length_237_cov_0.725000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 185 28 100.0 32 ............................ TCACATGATGTTTTGAATGTGATGGTGGAAAC 125 28 100.0 32 ............................ ACCATCCGACGGTTCGTTGTACCCGAGCCAGC 65 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGCACAGGCAGCTTAGAAATTACCGTTGCTTCAAACGCGAATTTTGCGTT # Right flank : AATCAATCGTTAACATTCCACCATAATGCCCGAGTTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //