Array 1 163746-162082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBL01000014.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N662 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163745 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163684 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163623 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163562 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163495 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163434 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163373 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163312 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 163251 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163190 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163129 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163068 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163007 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162946 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162885 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162824 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162763 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162702 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162641 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162538 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162477 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162416 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162355 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162294 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162233 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162172 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162111 29 96.6 0 A............................ | A [162084] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181130-180004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBL01000014.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N662 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181129 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181068 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181007 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180946 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180885 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180824 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180763 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180702 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180641 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180580 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180519 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180458 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180397 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180336 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180275 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180214 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180153 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180092 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180031 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //