Array 1 165309-163815 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTR01000005.1 Salmonella enterica strain BCW_4232 NODE_5_length_407989_cov_2.5287, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165308 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 165247 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 165186 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 165125 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 165064 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 165003 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 164942 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 164881 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 164820 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 164759 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 164698 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 164637 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 164576 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 164515 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 164454 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 164393 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 164332 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 164271 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 164210 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 164149 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 164088 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 164027 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 163966 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 163905 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 163844 29 100.0 0 ............................. | A [163817] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182878-181873 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTR01000005.1 Salmonella enterica strain BCW_4232 NODE_5_length_407989_cov_2.5287, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182877 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 182816 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 182755 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 182694 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 182633 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 182572 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 182511 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 182449 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 182388 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 182327 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 182266 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 182205 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 182144 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 182083 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182022 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 181961 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 181900 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //