Array 1 241572-238234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGV010000002.1 Tyzzerella nexilis strain MSK.23.79 CCEHECFC_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 241571 32 100.0 33 ................................ GACAAGTTGTACAAACGTCGGAGACGGCATCTA 241506 32 100.0 34 ................................ TCCATTGTAAAAGCTATAAAACTGTTCATGAAAG 241440 32 100.0 35 ................................ ATAATCTCTTGTAAATCACTTTGTGATATGTTTTC 241373 32 100.0 33 ................................ TTTAGGCTTATTAAACTGCTGTAATTTGTCGAT 241308 32 100.0 33 ................................ TCAAAAGAATAAGCGTAGAGACGCTAGGAAATT 241243 32 100.0 33 ................................ CACTTTTAACGTACAACACACACATACTACTAC 241178 32 100.0 33 ................................ TCCATATCTGCATTTGTTGTAGATTAACATTTG 241113 32 100.0 35 ................................ CTGGTCTCGACAGAATGTAATCTTATGCAAGTTAC 241046 32 100.0 34 ................................ CAACTATGCGGTATTGGTTAATAATCCGCACTTA 240980 32 100.0 34 ................................ AAGCGAGATGTACGCAAGGAATACGGGGTAAAAC 240914 32 100.0 34 ................................ TTTTAAAAACCTCATGTGAAATCTACGATTAAAT 240848 32 100.0 34 ................................ AATCTGACACCACTCATTTGACTTTTCGATTGTC 240782 32 100.0 33 ................................ TTGGTAAAGCGTAATATCCCATCCGAAATCTCC 240717 32 100.0 34 ................................ ATCATGCAATCACTTCTTGTTTCTGAAGAACCGT 240651 32 100.0 35 ................................ GATTAGATGATGTTATTCTATTTGTAGAAAGAAGG 240584 32 100.0 36 ................................ TAAAGTCGGTCTTGGTAGCATTTGGAGTAGTACAAA 240516 32 100.0 34 ................................ AATTCGATAATTTCACCGTAAAGCTGCATAAATC 240450 32 100.0 37 ................................ TTGTGACGTACACCAAGCAAATGCTTGCAGAATCAGG 240381 32 100.0 33 ................................ TTGCGCACCTGATGTGCTAGTATCTCATTTTCC 240316 32 100.0 35 ................................ ACCTCTCTAATATCTATGTGTTGCTGTTTGTACTT 240249 32 100.0 35 ................................ ATCTGCGTGTTTATTATATTTGTAAGGGCAGGGAC 240182 32 100.0 34 ................................ TAACGTAAACGCCTTATTTTGCGAGCTTTGTACT 240116 32 100.0 32 ................................ TTTACAGCAATTCGATTCTCGTACATCATCAG 240052 32 100.0 33 ................................ TCCTATCTCGGAGATGGCTCCTATGGCATTTTC 239987 32 100.0 33 ................................ GAAAAATAATAAACATCAAGATTATTTTTAGAC 239922 32 100.0 34 ................................ TCGACAGTGGGCTACCCGTCTTATGTTAGAGGAG 239856 32 100.0 34 ................................ GTGATTGTGATGTGACATAAAACTACAAATAATA 239790 32 100.0 36 ................................ TGCTTTTTCTTCCCACGCTTTTAACCTCTTGTCTGT 239722 32 100.0 35 ................................ TTTTAACAGTCTCGGTACATCCTTAAACTCCTTTT 239655 32 100.0 35 ................................ ATTATAGCGGTCAAGAGCAAGGCTTGCTTTCGCTT 239588 32 100.0 33 ................................ AATCTGCTGTCACTCTTAATGTCCGGTCTGTAC 239523 32 100.0 33 ................................ TAGTGGTCTGAATGCAGCAAAGTCGGTTGTGTC 239458 32 96.9 35 ....T........................... GCTCAATTCAAACAATGATCCTACAAGCTCACCCA 239391 32 100.0 34 ................................ CTCTGTATCAAATTCTAAAACAATATAATTATTT 239325 32 100.0 33 ................................ ATTGAAAGAATAGCTCCTGGGGTATTCAGGAGA 239260 32 100.0 34 ................................ TTATTCGGTTTTGTTACAAATCCGTCTAAAATAA 239194 32 100.0 37 ................................ AATTATTTTAAATTTCGGTGTTGACAATTCAATTTAA 239125 32 100.0 35 ................................ AAGGTTGGTTGTATTGGTACAAAGAACAGACAGGA 239058 32 100.0 35 ................................ TACTTAAAAAGGCGAGGTGTTTTACCCCGCCTAAA 238991 32 100.0 34 ................................ TTCCATGTTGCATCATAAATAGGGCAGTCACTGT 238925 32 100.0 33 ................................ TTCCGATGACCCTACTAAAGGTGGTAAATTACT 238860 32 100.0 34 ................................ GATTAAACCAGCTTTTAGGAGATCGTCTCGCACC 238794 32 100.0 33 ................................ TTTTTCCACGAAACCGCCAAGCTCACCCGCTTT 238729 32 100.0 33 ................................ ACAGAATTAACTTGCTGTGTTATATCGATTGTG 238664 32 100.0 34 ................................ AACATTTAGCCGTTTTATTTCCACAATATATAGC 238598 32 100.0 35 ................................ TTTGTATCTACGCTTGTTTTAAAAACACTGTTCTT 238531 32 100.0 36 ................................ TTAGATATGTAGAAGAGGACAAAGCAGAGGAGCTTA 238463 32 100.0 34 ................................ GTTATCGCAGATGGATCCATCCGATCGGGAAAGA 238397 32 100.0 34 ................................ TCCAGCTAAAAAACCGAGCATTGTGAGTATTATC 238331 32 100.0 34 ................................ GAGCTTGGTATTTTGGAGACAGACGGAAAACTGG 238265 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 51 32 99.9 34 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Left flank : CAGGAGAAAGATGAAACAGATGCAGGCATATCTTCAGGAAGTTTTAAAGAGACAATATAGTACAGAAGGATTTAAGGATATACTTAGAAAAATAAATACAGGATTATCTTGTGTGTTAAAGTGTGATAATGTGATTTTACTAGGTGGTTATAAAGGATTACTTCATTCGATATTATTGGATGCGAAGCAAGAAGAGTATTCTAACGGAATATACATAGACAATGAGAAAAATTTGCCACATGGGATTGTTTGCCTGACATATAAGAGATAATACGGAGGGTTCTGTAAGAATAGAAAAATGTAGTGAAAATATACACAGAAAATGTTGAGTGCGAATACCTGGTAAACAGAAATTTCCTGGGGGATTCGCACCGAAAAACATGTCGTATTTGGGTTGAATATGAAATTGATTGTGTGATAGTCTTGTAATGTTGGGAAAAAATTAGTATAATTAACAAAAGATTGACTGATTATAAAAGAAAAAATTAGTCAATGTTGCA # Right flank : CACGAGAAACTTTGTGGGAATGAGTGGGGAGTGTGGTAACACAAACAATTAAATATTGAATTTGAGGGGGACTTGGAAAAAAGTATCCCTTTTCAACGTAAGGCGTTCAGAAATGAGCGTCTATTTTTTACCCAAAATGAAATGAGCATTAAATTTATGAAAAAAATATTGAAACGATTGTGTACGGGGGGCTTTGCCTTTTGCGGCTGTATTTACTGATTTGTCGGCTATACCCGTTTTTGTGGAACACAAGTAATACTGTACTGGACGAAGTCAGAAGAGCGTGTCGGTATCGTTGAAAAAGTGATGAATGACGGTTCAATTGGTTCTACCTTTAATGAGGGATACATAAGCCGAGGGTGAAACTGCCTGTTGTATTGACATGAATACCGCCTTTCAGAACGGCTGCAAGACCAAAGCCGACGCAAGCGCACGTAAGAGTGGCGCAAAGCAGCCGGCTAAAAATGTCAAGGTACTCGTTATTTTGCGTTCAAGAATAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 251120-250081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGV010000002.1 Tyzzerella nexilis strain MSK.23.79 CCEHECFC_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 251119 33 100.0 35 ................................. CTGTATCCGTTGCAACATTTGTATGATAAACTCTT 251051 33 100.0 34 ................................. AAAGCGAATCCTTCGTTGATGTCTGCTCTTGTTG 250984 33 100.0 33 ................................. ATATTTGATCTCCTTGTAAATTATCCTTGCTCC 250918 33 100.0 36 ................................. GAGATGAATGGACACAAAATAGGACAGTGGCTTGTA 250849 33 100.0 34 ................................. TTGATTGTGGGCGCTCATTCGCCAACTCTACTTG 250782 33 100.0 34 ................................. TTGGAATCGCGTTGTAAAAGCTCTATCTAGCAAC 250715 33 100.0 34 ................................. GTAGTACTTAGGTATAAAACCCTGTGCTTAAATA 250648 33 100.0 33 ................................. ACGCTTCGTCTCGTCCGCTCTCCCCAGACGGTC 250582 33 100.0 33 ................................. TTCCCAATAAGAATGAATGGCATCTTCATGCTC 250516 33 100.0 33 ................................. TTGATAATCCGGATTTGTTGGAGGTGGAGTGAT 250450 33 100.0 34 ................................. TTCTATCAGTTACAATATACGTCTCAGAAATATT 250383 33 100.0 33 ................................. TGACAGTCTTTCCACTAAGCACATCGTCAAAAT 250317 33 100.0 36 ................................. AAACACAATATCATCACAAATCCTGTCTATAGTAAT 250248 33 100.0 35 ................................. CTTTGTAGTCAGAGCTCCTGATGCCGCCAAAACCT 250180 33 97.0 34 ...........G..................... GTAGGTGTCGCTCCACTTGTAAACCAAAACGGAT 250113 32 84.8 0 ...................T-.A..T..T.... | G [250088] ========== ====== ====== ====== ================================= ==================================== ================== 16 33 98.9 34 GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Left flank : CAAGAGATCTGAAGTATCTGTGTGAGAATGGGTATGAGCTGAAGAGAGTCAGGGCGGTGGATATGTTTGCGAATACGGTACACGTCGAGACTTGTGTGTTGCTACAACGAAGAGCTATGTAGAAATCCTTAATTTTAGGCACTTTGCGAAGCATTTCGTGTTTTCACCAGAGGGGAAAAATAGTCGCGATAAACACCTCAAAAACTATTTTGATGTTTCGGTGGTTGTTGATATAGGGTGTGGGAACACAACAAATTAAATACTAATTTCAGGGATACTTGTTAAATATCCTACAGAATTTAATTGTCGAAAATATAGAGAGAATATTAAGTGCGAATGTCTAGTAAACATAGATTTTCTATGGGATTCGCACCAAAAAATAGTTCATATTTAGGTTGAATATGAAATTGATAGTGTGATAGACTTGTAATTATAGAGAAAAATTAGTAGAATTAGCAGAAAGTTGAACGATTGTAACAGAAAAATTAGTCAACATTGCT # Right flank : ATTTGAAGATATATAGAGACAGTCTGTCAGACGAAACGGAGATCAAAGACGTAGAAGAATTGTTAAAGTATTATATCAATAATAGAGAAGGTCTGATAGCGTATCAGTCACAAGGATTAAACTTACCGGAACATCCGGATGGATTGGAATACAGAAACATGGGAACTATGGAAAACCACATCTGGAGCGTGATTGCAAAACGAATGAAGCACAGTCATACCTGCTGGAGTAAACGGGAAAATCATCTGGCAAAGATTCTTGCAAAGAAATGCGGTGGAAAGTTATACGAAGTAACAGAAAAGTCAAAGCATGCCATATTCAAGGAAGAGACCGTGGAAGAAATTCTGATGGCAGAGGAAGTGGCTAAAAAAGTAGGAAAAGGATACGAATACCCTACCATAGGTCACATGGTAGGATTAGAGGGTAAAATAATAGGTGAACGCAAGAAACTGTTTGCAATGTCAGGATTTTAGTAAACAACTGTCAGAGAGAATGATAAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 366273-365307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGV010000002.1 Tyzzerella nexilis strain MSK.23.79 CCEHECFC_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 366272 32 100.0 34 ................................ TACCCTCTACAAGAAAGATATGCAATTATTTATT 366206 32 100.0 35 ................................ TCACATGGACGAAGCAGAAAATGATAGTTGGATTC 366139 32 100.0 37 ................................ TAATAACAATACGAATATCGACTACGTGCCATATAAA 366070 32 100.0 34 ................................ AAAGCGAATCCTTCGTTGATGTCTGCTCTTGTTG 366004 32 100.0 35 ................................ TAAAAAAAGTGCCCAAGGTTTGCAGACCTTTTTCG 365937 32 100.0 35 ................................ TGCTCGTTTTCGATTTTTGCATCAAATTCCATCCA 365870 32 100.0 34 ................................ TTCTGAAACATGAAACTCACCTTTTTGTGATTTG 365804 32 100.0 34 ................................ GGGTTTAAAGAGAGTCAGGTCGATGTAGATGCAT 365738 32 100.0 36 ................................ TCATCATCTAGTCTTCTGTCCCAGTCCTCTGCAATC 365670 32 100.0 34 ................................ CGACCTTTATGAATCTGATTACAAATAAGTGTCC 365604 32 100.0 33 ................................ TCAAGTGCACAACTTTTTGGACTGGAAATTAAA 365539 32 100.0 37 ................................ CATATACAAATGCTCCTGCCACAAGTGCTGTGCCTGC 365470 32 100.0 35 ................................ CGGCATGGATTACTGTGGAGATGGTACAAGCTGCC 365403 32 100.0 33 ................................ GTACACCTCGCTCTACTTTTAATGTCCAGCATA 365338 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 100.0 35 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : CCGGTGTTTCTTTGGAAATGAGGCGAAAATGGAATGTTAGTGTTGATTACATATGATGTGAATACAGAAACAGTGGCAGGAAAAAGAAGATTGCGCCAGGTAGCAAAGCAGTGTGTAAATTATGGAAGAAGAGTACAAAATTCTGTATTTGAGTGTATTTTAGATAATGCGCAATGTGTTATGCTCAAGGCAAAGCTGACAGATATCATTGATGAAGAGATTGATAGTCTGAGATTTTATTACCTGGGAAACCAATATAAAACGAAAGTAGAACATGTTGGCGTAGACAGAGGTGTTGCTGCTGATGGAATTCTTATCATGTAACAGGAGTGCGAATGGCAAGTATACATAAAAATGCAGGGGGATTCGCACCAGAAAAATGTACAAAAAGTAGCTAAGAAAGTGAGAATTAGGAACAAATGATAAGAAAAAAAGAATGATATTGATAAAATTTGGGAATATTTAACGTAATACAAGGCCTAAAATTGGGGAAAATTGCT # Right flank : TGCGTGTTGTGCTGCTTTCTGTTCTGCGGATTCAGGTCGGAGATATGTTGGATGAATGTGTGGAGCGCTTTCCATTTTAAATAATTGGTGATTTGAACGAAAAATATTGTAGCGGATGGAGTACGATTCAAATTGCACTAGCTATCTATCGATCAATCTGCTACAATCAGCTTATAGTGCGAGCTGAGAAATCAGCATAGCTGATTGTATATAGTAGAAAAATCCTGTCGGGTAAGGTCTAGCCAACCGCATGTACCGAGCCCTTGGAGGCAAAGCGGTAACGTTAGATTTCAGCGTAGGACAGGGAGCGACAGAGCCGAAGCGAAAATGAAGTGATCTGGGAAATGATTGTGAGGTCAGAAATGATAGATATGCTTATTAGTACAAGCAACGACAAGTTATTTTATAAAATTTTGTCCGTACAAAACAGTGTGGACAACAATATGGATTGTCAATGGAATTATACAAAGCATATTAAAAAGGGGTATTGAGCCGTTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //