Array 1 804-2765 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAJ01000014.1 Neisseria meningitidis strain Nm322 Nm322_scaffold_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 804 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 870 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 936 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1002 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1068 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1134 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 1200 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1278 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1344 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1410 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1476 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1542 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 1608 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1674 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1740 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1806 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1872 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 1938 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 2004 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2070 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 2136 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 2202 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 2268 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 2334 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 2400 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2466 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2532 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 2598 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 2664 36 100.0 30 .................................... CGCGCGCTTGCGCAAGGGCGCATCGTTACC 2730 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 30 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //