Array 1 20489-17527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNJ010000005.1 Dickeya fangzhongdai strain 908C NODE_5_length_148620_cov_21.053640, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20488 29 100.0 32 ............................. AGAATAGCGACGATGAGCCTGACGTTGAAATA 20427 29 100.0 33 ............................. GCTGATACCCAGCGTCGCCGCTAACTCATTTGC 20365 29 100.0 32 ............................. GTTACCCCTCCCGCCTCCATCAGTCCGCGATG 20304 29 100.0 32 ............................. TATTCAACAAAAATTAGCCCTGTATTTGGCTC 20243 29 100.0 32 ............................. CGCCTGTTTGATTCCCTCACAACTACCACCAC 20182 29 100.0 33 ............................. ATGCTGATTCATGCCGCAGCGACAATGCCGACC 20120 29 100.0 33 ............................. CGGTCAATCTGAATTTTGAGCAGGGTATACACC 20058 29 100.0 32 ............................. TGCGCCGATCCACTCCCGGGCAAATGCAACGA 19997 29 100.0 32 ............................. ATCGTCATCGGTATCGCTGAATTTATCGAACA 19936 29 100.0 32 ............................. CCCTCCTGTTTAATGTCCTCCGTGACAGAGGG 19875 29 100.0 32 ............................. AGAAAACCACATTCGCAATGGATGCGACGCCT 19814 29 100.0 32 ............................. ATGAGCAATTGCTGCCAGCACAGCGCCAGCGT 19753 29 100.0 32 ............................. GCGTTTTTCCTAAACTGAGCTGCACCCTCCTG 19692 29 100.0 33 ............................. TGAATACAGCGGGTACTGACTGCGACACATGGG 19630 29 100.0 32 ............................. ATTGAGCCCGGTAAAACTGTTCAGGTCGAAGC 19569 29 100.0 32 ............................. GTGCCGGTCGCTGCTGCCGTAAACATAACGGC 19508 29 100.0 32 ............................. ATGCGAGGTACAAACACCGGCCAGCCAACAAA 19447 29 100.0 32 ............................. GACGGTCATTCCGGCCTGACGGCGGGCAATGA 19386 29 100.0 32 ............................. ATCGTCCTCGCAACGCCCTACAACGGGCCTCT 19325 29 100.0 32 ............................. CTGTAACTCAGTCTTTCTACTAGTCATATGCG 19264 29 100.0 32 ............................. CTGGGAGGAAAGGTGGGGTGGATTAAACCTGG 19203 29 100.0 32 ............................. ACATTCCATTCATGGGCGTGGTGACCGTCGAT 19142 29 100.0 32 ............................. CGGTGCTGGACAAGGCCGTCAGCAACGGTCTG 19081 29 100.0 32 ............................. TAGGGCAGATCATTATATGCGAGGCCGCATGA 19020 29 100.0 32 ............................. TAAGCCGCTCGCGCTGAAACCCAAATATTCAG 18959 29 100.0 33 ............................. CTGAAACCATAGGGGAATATGTTTCACTCATGC 18897 29 100.0 32 ............................. AGTCCGCCAGTTGCTCGTACTTCTGGCTGGAT 18836 29 100.0 32 ............................. AGTACCGGGCCGCGGCGTTGCAGGCCGATGGA 18775 29 96.6 32 ............................T ATCTGCTGGATAAATTCCGTGTGAGCCATTGC 18714 29 100.0 32 ............................. GCACGACTACCCCCGGGGGTGAACGCTATCTC 18653 29 100.0 32 ............................. GTTGTTTCGCGTCAGGCTCCCTTCGGAAATAA 18592 29 100.0 32 ............................. CAATGCTCTGACTTTTTCGTCAGCCACTTTAC 18531 29 100.0 32 ............................. TGGTGTGCCAGCATTCACTCAGTTGGGCCGGG 18470 29 100.0 32 ............................. CAGCAAGATCCGCATCGATTCACCCCATTGCA 18409 29 100.0 32 ............................. GCCGAATCCACGCAGTATCGCTATGCAAACAC 18348 29 100.0 32 ............................. TTATTGATCATGGCGAGGCTGGCGGATTACTC 18287 29 100.0 32 ............................. GGAAATCAGCATGAGCATTTGGCCTACTGAGG 18226 29 100.0 32 ............................. AGATCATTGGTGAAGATATTCTTTCGTCACTG 18165 29 100.0 32 ............................. CAGCCACAAATGGACCGGCTGTTGGACGTGAC 18104 29 100.0 32 ............................. CACGTCGTACACGCTCGTAAGCGGCTCCACAG 18043 29 100.0 32 ............................. GAACGACATTTGGCAGATCTTGAGCAAAAAGT 17982 29 100.0 32 ............................. GGACTCGGGGCCACATCATGACTGTGGCTCAT 17921 29 100.0 32 ............................. GCATAACAATTGGCAAAACCAATCAAGGGACG 17860 29 100.0 32 ............................. GCAACGGCGACGGCGCGAATTGCTGAATTGAG 17799 29 100.0 32 ............................. CGGCATCTGTGCCAGATTTGACGACAGGACGT 17738 29 96.6 32 ............T................ ATCCACTCGTTAAGCCGGTTTACCCAGAACTG 17677 29 100.0 32 ............................. CGCTCCGAGTCCGATATTATTCAGCACCTACA 17616 29 100.0 32 ............................. ACACGACGGCCGTTTACCTGGTTGTACAGGGC 17555 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCGCCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAGCGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : TTGATTAAGATAGCCTGATTGGCGGCCGGTTACGAAAAAAGCCACTACTCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGATGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGTGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAGCTCGCTCACTTTGCGCACGCCATCCACAATTCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAATGACCGATAAGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59588-60145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNJ010000008.1 Dickeya fangzhongdai strain 908C NODE_8_length_137687_cov_22.408527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59588 29 100.0 32 ............................. CCCTTTGATCTCCCACTTGGCCGTTCAGTGCA 59649 29 100.0 32 ............................. ATTGTATAGTTCTTTTCCGCTCATGTGTGGGC 59710 29 100.0 32 ............................. TAATCACTGGCAAAGCCGGAGGTGTTGCAAGT 59771 29 100.0 32 ............................. GCTCTTTCAGTCGTTCCAGAAGATAATTCATA 59832 29 100.0 32 ............................. CGGGATATTTCTGTCGCCGATAGCGTCTTCGT 59893 29 100.0 32 ............................. ACGTTGTCGTTGCTGTAATCCGTCTGCTCGAC 59954 29 100.0 12 ............................. CCCGGCGATCTG Deletion [59995] 59995 29 72.4 32 ..CC..GA.C.C.TT.............. GTGCCCCCGGCTTTACTGGGGCGGTATTATTA 60056 29 96.6 32 ............C................ TCTTCCGGGAGTTCTGACCAATAACAACTACC 60117 29 86.2 0 ............CT...........G..T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 30 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTCAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCCAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTATAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCAGTGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTCCAGGCTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTATAATATTCACACAAATGATGATTTATGTGCGTTTAATTTCTTTTTGGTGTGAATAAAATCACATAACAGAGTGCGCTATCAGGGTGAAATACCCGGAAGCGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGACGACGATACCGATGAAAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14997-15865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNJ010000039.1 Dickeya fangzhongdai strain 908C NODE_39_length_106334_cov_21.598482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14997 28 100.0 32 ............................ TGAGTCCCGATGAACCCGCCGCCAGCGGCGAT 15057 28 100.0 32 ............................ GTCACAGGAAATGGCACTGGAGGCGGCAAAAG 15117 28 100.0 32 ............................ CGCGCCACATCTGCCGCGGGGACAGCGTCAAT 15177 28 100.0 32 ............................ TGGATGATGGGGGTGACGATGAATCCGGGAAT 15237 28 100.0 32 ............................ GCGCCAAAGCCGCCGCGTTCGACAAATCCAAA 15297 28 100.0 32 ............................ AATTGACAACAGCCCTGGTCACGTCATTGAAG 15357 28 100.0 32 ............................ CACAGCAATCAGCAGACTCCAGTCAGGTGGCG 15417 28 100.0 32 ............................ CTGAACGGCGTTATTTACCCGGAATATCGCGG 15477 28 100.0 32 ............................ TAATCACTTCAAGCCCTCGCGATTCCCATTCG 15537 28 100.0 32 ............................ GTCAGCAGCAAGGCAAGGGACGCGACCGGACT 15597 28 100.0 32 ............................ TCAACGACAACGAGATGGGGTAAAGAACATGA 15657 28 100.0 32 ............................ GCAATTCAGGCAGAACCCTTGCGCCAGCGGTT 15717 28 100.0 32 ............................ AATGGAAAGAACCGTGTCCGTGGGTTCCATTT 15777 28 100.0 32 ............................ GTGGAAAACGGGGATAACTGCGTGGGCTCCGT 15837 28 71.4 0 A...........AC.......A..TCCC | A [15857] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCCACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAAACCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAACGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAAACTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCAGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAATAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAGACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGCTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGCGCGCGCGGCGCGTTACCCTGCTGCGCCAACCCAAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 21508-20700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNJ010000039.1 Dickeya fangzhongdai strain 908C NODE_39_length_106334_cov_21.598482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21507 28 100.0 32 ............................ GAAACGTGGCGGATGGCCGGAACATGCTAATT 21447 28 100.0 32 ............................ CGGCGGAACACATCATTTTCCGCAGCCAGTTG 21387 28 100.0 32 ............................ CACTACCGGAACAATGGGAATTTTTCGGTCAT 21327 28 100.0 32 ............................ GCAACAAAAAAAGATCAGGCTAAGATAGTTTT 21267 28 100.0 32 ............................ TCATTCAATGTTTGTTTAATTTGTCTCTCAAT 21207 28 100.0 32 ............................ GAGCAGCGCGATGAGCTAATCGAAGATGAGGA 21147 28 100.0 32 ............................ TGCACCGCTTGTGATTTCGGATCGCCGTGCGT 21087 28 100.0 32 ............................ CAGACCATTCTGACAAAAAATTCACCGTCCTT 21027 28 100.0 32 ............................ AGTTTGTCATTACCCTGAATGATGCGCTGATA 20967 28 100.0 32 ............................ GTTCTATGAAACAATCGGCGCGGCAGATTTGT 20907 28 100.0 32 ............................ CGCCAAGTTTCGAGATGATTTCGGGGGGGTTT 20847 28 100.0 32 ............................ TGCTTTATGACCCCCTGATATCATTCGTCTCC 20787 28 100.0 32 ............................ GCTGATGTGACGGTCAGAACACAGAAAGTCAC 20727 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGCTGGAGCAGACTGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGTTGCCGGTGCCGGCGGGGGCGAAGCACCGCATCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAACGGTTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGTCTCTCCAACGGGCAAACGTTTTTATTGTTTGTCGAGCACGGTCCGTTGCAGGATAAACCGGTCGCCGGAGCGTTCTCCAGCTACGGATTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGATCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGAGCGAGTTCGCTACA # Right flank : GGCAGGTGTTGAGGCAGTCCCCGAACCGGCAAGTTCACTGCCGCACAGGCAGGGGTTGACGGGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGAGACGCGATTGTCTATCCCGCACGAAACCATCCACCGCCCCCGCATACATTCGACAAACACATTCGCCAGCAATACCCCGGCTGTGTGCCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCACCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 30807-32515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNJ010000039.1 Dickeya fangzhongdai strain 908C NODE_39_length_106334_cov_21.598482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30807 28 100.0 32 ............................ CAGGGCGGCAACAAACTCGATCCGAAGGTCGA 30867 28 100.0 32 ............................ AAAATGCGACGCGAAGAGGACGCGTGCCGCGA 30927 28 100.0 32 ............................ GATTCGCGCCCGGACACCGCTGGAGCCGATTC 30987 28 100.0 32 ............................ AGTAGGCGGCCGGTCACGGTCGTCAATGCGTT 31047 28 100.0 32 ............................ GCAGACGCTGTGAACGTTTTTACAGCCAGTAG 31107 28 100.0 32 ............................ ATTAACCCATTTAAATTATTGATTTGTTTGAT 31167 28 100.0 32 ............................ GAAAGGCATCATCAATTCGATCTCATCGTCAA 31227 28 100.0 32 ............................ ATCATCAAGAAATAATTTCTTTACTAAATATT 31287 28 100.0 32 ............................ ACCAGACCATCTCTCAGAGCTTGGTCAATATT 31347 28 100.0 32 ............................ CGTGCCGCCGATGCCGCCCGTGCCGCCGATGC 31407 28 100.0 32 ............................ TAATAGATAGAGAGATAGCCATATAATCAATG 31467 28 100.0 32 ............................ ATAATGCATAACATAAATCCGGTGTTGGCTAC 31527 28 100.0 32 ............................ ACTGAATCCCGGTATCGTCGGTGCCGGTTCCT 31587 28 100.0 32 ............................ TCTACTTCTTTTGTGGTTGCGGGTGCGCCCAT 31647 28 100.0 32 ............................ GCACGATAAATGGGCAGGTGGTACGCTACATC 31707 28 100.0 32 ............................ AGTCAGCGCCACGGTAGGCGCGGCGGTGAATC 31767 28 100.0 32 ............................ TGGTGCAACAGCAGCATGGCCAGCCACGTCAA 31827 28 100.0 32 ............................ ATCAGCAATCTGGTCGGCAGTGTTCAAGTCGG 31887 28 100.0 32 ............................ TGCCACGTCTCCCGCACCCAGATGCGGTCGCC 31947 28 100.0 32 ............................ AGCTGCATTCCCGCCGCACGTTGAACGTGTTT 32007 28 100.0 32 ............................ TTACTCCGCCGCGTTCTGCGTGCGCAATGACG 32067 28 100.0 32 ............................ GATCGCATCGGGAAAGCGAGAAGCACTGTCAA 32127 28 100.0 32 ............................ AATTTGGCAAAAAACACCGGCGTTAATTTTGA 32187 28 100.0 32 ............................ AGTCAGCAGTCAGCAGAGAACGCGGCCGCTCA 32247 28 100.0 32 ............................ AGATAATCGATATACCCATAAACAACATGGAC 32307 28 100.0 32 ............................ TCCAGCGCGAGAGAGGGGGGGTATCTGGTCGG 32367 28 100.0 32 ............................ CTGAAATCTCAATTCAGCGCCGATCTGGCTGC 32427 28 100.0 32 ............................ CGCGTTGTACCCAGCCTGATGCCCTGTGTTGT 32487 27 85.7 0 ....................G..-..CG | AG [32505] ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.5 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGACGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATGAATTAGAAAACACGTAATCTACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCCAAAACACTTTTCCCGCTTCAATACCCTTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGAGATACAACGGGTTAGAGTCAACGAGCTACA # Right flank : GGGGTGCAGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAACGACTCTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCCGTCCGACGGGCCGACGACGGCGTGCCGTTGTTGCCCTGCGGCGTCAGGCGGAACGCGCTGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //