Array 1 295492-296173 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJX01000002.1 Listeria monocytogenes strain FSL L7-0261 NODE_2_length_581652_cov_72.167514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 295492 29 100.0 36 ............................. AGTATTTACTTAGACAAACGCGCTCAAATTGAGCAT 295557 29 96.6 38 ................T............ ACAGTCAGTTTGTGCTCATTCACTTGAACTGCATCTTT 295624 29 96.6 37 ................T............ AGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTC 295690 29 100.0 36 ............................. GAATTATTAGAAAAAATGAAGCAACAAGGTATTGAA 295755 29 100.0 36 ............................. TTTTACATGGGAGTCAAAAGAGCAACTTAATATACT 295820 29 96.6 38 ................T............ TTATAAAAGTACGCTTTAAATTTTTTCATGTTAACACT 295887 29 100.0 34 ............................. GTTGGTAGGTTTAACCAAAGATGATCACCATGTC 295950 29 100.0 34 ............................. ATGTCCCACTGCTCAATTTTTAACGGGACTCCAG 296013 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 296079 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [296102] 296145 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 94.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTGAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 22766-23317 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJX01000004.1 Listeria monocytogenes strain FSL L7-0261 NODE_4_length_276713_cov_60.788028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 22766 24 100.0 42 ........................ GGATTAATCAATTTAACTTCTCTGACTATAAATGACAACAAG 22832 24 100.0 42 ........................ AATTTGTCAAACTTAAACAAGCTGGATATTAGCAGAAACCAA 22898 24 100.0 42 ........................ GGATTAATCAACTTAACTTCTCTGGCTATAACTGGCAACAAG 22964 24 100.0 42 ........................ AATTTGTCAAACTTAAACAAGCTGGATATTAGAGTAAACCAA 23030 24 95.8 42 .......................C GGTCTAATTAGTTTAGTGGATTTGCATTTGTCTGTAAACCAG 23096 24 79.2 42 ....C....A.T...G.G...... GATTTAACTAATCTACGAAGTTTGGATATGGACCACAATCAA 23162 24 75.0 42 ....T...C.....CT.T.....C AATTTAACCAATTTAAAAAGGTTATCTCTGGTCAATAATCAA 23228 24 83.3 42 ......AG.A...C.......... GGATTAATCAATTTAACAGACCTAGAAATAAGGATAAATCAG 23294 24 70.8 0 G...AG...G.......A..A..C | ========== ====== ====== ====== ======================== ========================================== ================== 9 24 89.3 42 ATAAGTGATTTAAGTCCCTTGTCT # Left flank : GAGAGTATTTTCTTTTGGAAGCTTAGAATGGATATCTCTCAGATAGATGATACATTTTTTAGTTACTAACTATGAGAGAAAGAGGTAGATTACTAATGAAAGAAAAGAAATATCTCCAGCGACTATTCGTAGCATTAACCATCATCATAGGTATCAACGTATGGATAGGAAGCAGTGGAGAAACAGAGGTAAAGGCAGAAAGTATTACACAACCAACCCCCATTAATCAAGTGTTTCCAGACGCTAATCTAGCGGAATTTATACAGAGGGTATTACAAAAACCCAATGTGTCTGCGCCTGTTACACAAGACGAATTGAATTCAGTGGAGAATATAAGTGCTGATTCTGGGCTATATGACAATATAGCTTCTATAGAAGGCGTTCAATATTTAAATAATTTAACAGAATTGCGATTAGTGAGTTTGGATAATAGTGTAAGCGATTTGCGCCCTTTATCCGGCTTAATAAAGTTGGAGTTTATAAGTTTTTACCATAGCCAA # Right flank : CAGTTTAGCCAATTTAGAAATGTTGTATGTTAATTCGAATCAGATAAGTGATATTAGTTCGTTAAAAAATTTGAAAAATTTGGTGCTGTTTTCGGCACAAAGTCAAACAATAGTGAATAAACCAGTGAGCTATCAAAAGAATCTGGTTCTCTTGAATAATATCACAGATAGAACGGGGACGTTGGTATCTCCTTTTGGTATCAGTGATAATGGGGGCTATACTCCCCCCCATATTATATGGGATTTATCAGACTATAAGAAACAAGTGAGTTATACGTTTGACAACAGCGACATGGACTTTCCATTTTCTGGGACCGTCATTCAATCACTTATCGAAGTACCTGTGAGTTATAAGGTGGTATACGATGTGGAGGGGACGGAAACAAGTGAAACTGTTGCAAAGGATACCTTATTAACATCTCCAGCAAATCCAGTCAAAGAAGGGTATACCTTCACAGGTTGGTATGATGAGAAAACGGGCGGAATCGCATGGGATTTTG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGTGATTTAAGTCCCTTGTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //